View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_339 (Length: 204)
Name: NF8606A_low_339
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_339 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 33120118 - 33119941
Alignment:
| Q |
19 |
aacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33120118 |
aacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagagttgataacccatggaacc |
33120019 |
T |
|
| Q |
119 |
gttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctatatt-cttggacat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
33120018 |
gttcccattcctggtgaaaagaatattatgtagactgctaaaccaactatcgccaaccatcctatattgcttggacat |
33119941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 33116906 - 33116784
Alignment:
| Q |
19 |
aacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaaca |
118 |
Q |
| |
|
|||||| ||||| |||| ||| || ||||||| || ||||||||||| | ||||||||||||||||||||| || |||||||| || |||||||||||| |
|
|
| T |
33116906 |
aacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaaca |
33116807 |
T |
|
| Q |
119 |
gttcccattcctggtgaaaagaa |
141 |
Q |
| |
|
|| |||||||| ||||||||||| |
|
|
| T |
33116806 |
gtccccattccaggtgaaaagaa |
33116784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 21491899 - 21492025
Alignment:
| Q |
26 |
aggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttccca |
125 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| | |||||||||||| ||||||| |
|
|
| T |
21491899 |
aggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttccca |
21491998 |
T |
|
| Q |
126 |
ttcctggtgaaaagaatattatgtaga |
152 |
Q |
| |
|
|||| || || |||||||| ||||||| |
|
|
| T |
21491999 |
ttccaggcgagaagaatatgatgtaga |
21492025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 21558479 - 21558576
Alignment:
| Q |
46 |
tgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaata |
143 |
Q |
| |
|
|||||| || |||||||||||||||||||| || ||||| || |||||||||||||| | |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
21558576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University