View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_340 (Length: 204)
Name: NF8606A_low_340
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_340 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 10368672 - 10368784
Alignment:
| Q |
25 |
tcatctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggaaaggagaagaaggaagttactatttctaggtatgggtttgcattt |
124 |
Q |
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| T |
10368672 |
tcatctccttcatcacaacccgtactgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcattt |
10368771 |
T |
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| Q |
125 |
cgatctcacccct |
137 |
Q |
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| T |
10368772 |
cgatctcacccct |
10368784 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 10368838 - 10368873
Alignment:
| Q |
151 |
gcgtgtgtgtgtcttaaggaacaattgtggagtata |
186 |
Q |
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| T |
10368838 |
gcgtgtgtgtgtcttaaggaacaattgtggagtata |
10368873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 11659585 - 11659653
Alignment:
| Q |
65 |
attgaaaaggacggaaaggagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcac |
133 |
Q |
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| T |
11659585 |
attgaaaaggacagcaagaacaagaaggaggctactatttcaaggtatgggtttgcatttcgatctcac |
11659653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 11668754 - 11668822
Alignment:
| Q |
65 |
attgaaaaggacggaaaggagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcac |
133 |
Q |
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| T |
11668754 |
attgaaaaggacagcaaaaagaagaaggaggctactatttcaaggtatcggtttgcatttcgatctcac |
11668822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 53239215 - 53239290
Alignment:
| Q |
28 |
tctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggaaaggagaagaaggaagttactatt |
103 |
Q |
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| T |
53239215 |
tctccttcattgcaaccagcgctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt |
53239290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 2170330 - 2170405
Alignment:
| Q |
28 |
tctccttcatcacaacccgtgctgtagtggtatgaaaattgaaaaggacggaaaggagaagaaggaagttactatt |
103 |
Q |
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| T |
2170330 |
tctccttcattgcaaccagcgctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt |
2170405 |
T |
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