View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_341 (Length: 204)
Name: NF8606A_low_341
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_341 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 30117 - 30293
Alignment:
| Q |
6 |
tacaatgagatggacatcgacctcaacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaag |
105 |
Q |
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| T |
30117 |
tacactgaaatggacatcgacctcaacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaagag |
30216 |
T |
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| Q |
106 |
cttccgtcatgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaattcatcacttctggt |
182 |
Q |
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| T |
30217 |
cttccgtcatgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaattcatcacttctggt |
30293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 48883546 - 48883403
Alignment:
| Q |
31 |
acgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaata |
130 |
Q |
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| T |
48883546 |
acgatgaagatcaatccaacgccgaaatcctcaacgaactcggcgacgatatggtcaaatacttttgcaagaaagcttccgttatgttcttcgaccaata |
48883447 |
T |
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| Q |
131 |
cggtttaatcagtcaccaaatcaactcctataatcaattcatca |
174 |
Q |
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| T |
48883446 |
cggtttaatcagtcaccaaatcaactcgtacaatcaattcatca |
48883403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 53014798 - 53014658
Alignment:
| Q |
42 |
ccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaatacggtttaatca |
141 |
Q |
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| T |
53014798 |
ccatcaaatgctgaaatcctcaacgaactaggtgaagacatggtcaaatatttctgcaaaaaagcttccatcgtgttcttcaacgagtacggtttaatca |
53014699 |
T |
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| Q |
142 |
gtcaccaaatcaactcctataatcaattcatcacttctggt |
182 |
Q |
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| T |
53014698 |
gtcaccaaatcaattcctataattaattcatcacttctggt |
53014658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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