View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_344 (Length: 203)

Name: NF8606A_low_344
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_344
NF8606A_low_344
[»] chr2 (19 HSPs)
chr2 (13-182)||(44624829-44624998)
chr2 (13-162)||(44615456-44615605)
chr2 (13-173)||(39153106-39153266)
chr2 (13-149)||(39138693-39138826)
chr2 (16-173)||(39387469-39387626)
chr2 (16-149)||(39472763-39472896)
chr2 (13-173)||(39216704-39216864)
chr2 (13-173)||(39396627-39396787)
chr2 (13-146)||(39371164-39371297)
chr2 (13-148)||(39205742-39205877)
chr2 (16-173)||(39196485-39196642)
chr2 (13-146)||(39380496-39380629)
chr2 (16-173)||(39413004-39413161)
chr2 (13-141)||(44895114-44895242)
chr2 (22-148)||(39478294-39478420)
chr2 (14-173)||(39421161-39421317)
chr2 (13-148)||(39223758-39223893)
chr2 (45-164)||(39188738-39188857)
chr2 (13-160)||(39604363-39604510)
[»] chr8 (3 HSPs)
chr8 (13-149)||(44730162-44730298)
chr8 (13-171)||(45343012-45343170)
chr8 (13-174)||(44949869-44950030)
[»] chr5 (2 HSPs)
chr5 (18-174)||(17060698-17060854)
chr5 (16-173)||(33562339-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (13-174)||(5849-6010)
[»] chr7 (1 HSPs)
chr7 (13-149)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (13-76)||(16114414-16114477)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 44624829 - 44624998
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44624829 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgat 44624928  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctggatacaag 182  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  44624929 ttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgctggatacaag 44624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 44615456 - 44615605
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||    
T  44615456 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 44615555  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttg 162  Q
    ||| ||||||  || ||| |||||||||||||||||| | ||| ||||||    
T  44615556 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttg 44615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 39153106 - 39153266
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||||||||||||||| || || | ||| ||||||||||| || ||||||||||||||||||||||||| |||||| || |||||| || ||||||||||    
T  39153106 gagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgat 39153205  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 173  Q
    ||||||||||  ||||| ||| ||| ||||||||||| |  ||||||||| || |||||||    
T  39153206 ttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgct 39153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 39138693 - 39138826
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||||||||||||||||||||| | | |  |||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||| ||||||||||  |    
T  39138693 gagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagt 39138789  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtc 149  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  39138790 ttatgaattgcttacttattttgatgaagatgaagtc 39138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 39387626 - 39387469
Alignment:
Q  16 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 115  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||| || |||||  || ||||||| |||||    
T  39387626 aagaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaattta 39387527  T
Q  116 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 173  Q
    |||  ||| |  ||||||||| |||||||||||  |  ||||||||| || |||||||    
T  39387526 tgggctgcttgattattttgacgaagatgaagttttggagctttttgcatttgttgct 39387469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 39472896 - 39472763
Alignment:
Q  16 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 115  Q
    |||| ||||||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||  ||||| || |||||| || ||||||| |||||    
T  39472896 aagacgcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaattta 39472797  T
Q  116 tggattgcatacttattttgatgaagatgaagtc 149  Q
    || ||||| ||||| |||||||||||||||||||    
T  39472796 tgaattgcttacttcttttgatgaagatgaagtc 39472763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 39216704 - 39216864
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    ||||||||||||||||||||||   ||| |||||| |||||||||  ||||||||| |||||||||||| ||||||||| |||||  || ||||||| ||    
T  39216704 gagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaat 39216803  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 173  Q
    ||||||||||  ||||| ||||| ||||||||||||  |  ||||||||| ||||||||||    
T  39216804 ttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgct 39216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 39396787 - 39396627
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    ||||||||||| |||||||||| | ||| |||| |||| |||| | ||||||||||||||||||||||| |||||| || ||| | ||| ||||||| ||    
T  39396787 gagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaat 39396688  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 173  Q
    ||||||||||| ||||| ||| ||||||||||||||  |  ||||||||| ||| ||||||    
T  39396687 ttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgct 39396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 39371164 - 39371297
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||| ||||||||||||||||| | |||  ||||||| |||||||||||||||| | ||||| |||||| |||||| || ||||||||| ||||||| |     
T  39371164 gagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaa 39371263  T
Q  113 ttatggattgcatacttattttgatgaagatgaa 146  Q
    ||||||||||  ||||| ||||||||||||||||    
T  39371264 ttatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 39205877 - 39205742
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    ||||| ||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||    
T  39205877 gagaaaaagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgat 39205778  T
Q  113 ttatggattgcatacttattttgatgaagatgaagt 148  Q
    ||||  ||||| |  || ||||||| ||||||||||    
T  39205777 ttataaattgcttgattcttttgataaagatgaagt 39205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 39196642 - 39196485
Alignment:
Q  16 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 115  Q
    |||||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||||| |||||| || |||||  || ||||||| |||||    
T  39196642 aagaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaattta 39196543  T
Q  116 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 173  Q
    |  ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  39196542 taaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 39196485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 39380629 - 39380496
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    ||||||||||| ||| |||||| | ||| ||||||||| |||| | ||| ||||||||| ||||| ||| |||||| ||||||||| || ||||||| ||    
T  39380629 gagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaat 39380530  T
Q  113 ttatggattgcatacttattttgatgaagatgaa 146  Q
    ||||||||||| ||||| ||| ||||||||||||    
T  39380529 ttatggattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 39413161 - 39413004
Alignment:
Q  16 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 115  Q
    ||||||||||||||||||| | ||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||  | ||||| ||| |||||||  |||     
T  39413161 aagaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttg 39413062  T
Q  116 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 173  Q
    |||||||  ||||| ||| |||||||||||| || |  ||||||||| || |||||||    
T  39413061 tggattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgct 39413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 44895242 - 44895114
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    ||||| |||||||||||||||| | | | || ||||||||||| |||| |||||||||||||||||||| |||||| || |||||| || ||||||| ||    
T  44895242 gagaacaagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaat 44895143  T
Q  113 ttatggattgcatacttattttgatgaag 141  Q
    ||||||||||  ||||| ||| |||||||    
T  44895142 ttatggattgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 39478420 - 39478294
Alignment:
Q  22 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 121  Q
    ||||||||||||| | ||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||||| |||||||||||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  122 gcatacttattttgatgaagatgaagt 148  Q
    || ||||| ||| || |||| ||||||    
T  39478320 gcttacttctttcgaagaaggtgaagt 39478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 39421317 - 39421161
Alignment:
Q  14 agaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatt 113  Q
    |||||||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||||  |||   ||||||||| |||||| || ||||||| |||    
T  39421317 agaagaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataattt---ggttctcggttttctactgcttttgtcaatt 39421221  T
Q  114 tatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 173  Q
    ||   ||||  |||||||||  |||||||||||||  |  ||||||||| || |||||||    
T  39421220 taccaattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgct 39421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 39223758 - 39223893
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    ||||| ||||||||||||||||   ||| || ||||  ||||||||||| ||||||||||| ||||||| |||||| || |||||  || ||||||| ||    
T  39223758 gagaaaaagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaat 39223857  T
Q  113 ttatggattgcatacttattttgatgaagatgaagt 148  Q
    ||||  ||||| |  ||  |||||||||||||||||    
T  39223858 ttataaattgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 39188857 - 39188738
Alignment:
Q  45 aaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatg 144  Q
    |||||||||||||||||||||| || ||||||||||| |||||| || |||||| |  || | || |||||||| |||  | ||| |||  |||||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatg 39188758  T
Q  145 aagtcataaagctttttgga 164  Q
    | ||  ||||||||||||||    
T  39188757 atgttttaaagctttttgga 39188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 39604363 - 39604510
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    ||||||||||| |||||||||| | | | |||||| ||||||| |  |||||||| |||||||   |||  ||||| || |||||| |  || |||| ||    
T  39604363 gagaagaagcaatgaagctagcacttaatttgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaat 39604462  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttt 160  Q
    ||||||||||  | ||| ||| ||||||||||||||  ||||||||||    
T  39604463 ttatggattggctccttctttcgatgaagatgaagttttaaagctttt 39604510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 44730162 - 44730298
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||| ||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  44730162 gagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgat 44730261  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtc 149  Q
    |||| |||||| |||||| ||||||| ||||||||||    
T  44730262 ttatagattgcttacttactttgatggagatgaagtc 44730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 45343012 - 45343170
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    ||||||||||||| |||||||| | |||||||||||||||| |||||| |||||||||||| || ||| | ||||| || |||||| |||||||||| ||    
T  45343012 gagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaat 45343111  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttg 171  Q
    | ||| ||||| ||||| ||||||| ||||||||||| |  ||||||||| ||||||||    
T  45343112 tcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttg 45343170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 44950030 - 44949869
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||| ||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  ||||    
T  44950030 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 44949931  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 174  Q
    ||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  44949930 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 44949869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 17060698 - 17060854
Alignment:
Q  18 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 117  Q
    ||||| ||||||||||| | |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  118 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 174  Q
    |||||  ||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctg 17060854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 33562339 - 33562496
Alignment:
Q  16 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 115  Q
    |||||||||||||||||||   ||| ||||||||||||||||||||||||||||||  || ||||| |||||| || |||||  || ||||||| |||||    
T  33562339 aagaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaattta 33562438  T
Q  116 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 173  Q
    |  ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  33562439 taaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 33562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 6010 - 5849
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||| ||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  ||||    
T  6010 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 5911  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 174  Q
    ||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  5910 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 5849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 19808950 - 19809083
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 112  Q
    |||||||| ||||||||||||| | ||| ||||||||||||||||||   | ||||||||||||| ||| |||||| || |||||| || |||||||  |    
T  19808950 gagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagt 19809046  T
Q  113 ttatggattgcatacttattttgatgaagatgaagtc 149  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  19809047 ttatgaattgcttacttattttgatgaagatgaagtc 19809083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 16114414 - 16114477
Alignment:
Q  13 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattc 76  Q
    ||||| ||||||||||||||||||| || ||||||||| |||||| ||| |||||| |||||||    
T  16114414 gagaaaaagcattgaagctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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