View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_345 (Length: 203)
Name: NF8606A_low_345
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_345 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 11227380 - 11227542
Alignment:
| Q |
41 |
atcataataactgtagtgatgaagatgctaattttatgttagagtaatttaattatatgaacattttgtgcttttctaataagctataagtcatagttta |
140 |
Q |
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| T |
11227380 |
atcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaattatatgaacattttgtgcttttctaataagctataagtcatagttta |
11227479 |
T |
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| Q |
141 |
ttgttcttttcaactcaattaaggtttatgaactttgtactatttttcttatatattgacctg |
203 |
Q |
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| T |
11227480 |
ttgttcttttcaactcaattaaggtttatgaactttgtactatttttcttatatattgacctg |
11227542 |
T |
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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 10128093 - 10128203
Alignment:
| Q |
88 |
tttaattatatgaacattttgtgcttttctaataagctataagtcatagtt--tattgttcttttcaactcaattaaggtttatgaactttgtactattt |
185 |
Q |
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| T |
10128093 |
tttaattatatgaacattatgtgtttttcatataagctatcagacatagctctttttgtactcttcaactcaattaatgtttatgaactttgtactattt |
10128192 |
T |
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| Q |
186 |
ttcttatatat |
196 |
Q |
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| T |
10128193 |
ttcttatatat |
10128203 |
T |
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