View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_38 (Length: 390)
Name: NF8606A_low_38
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 385
Target Start/End: Complemental strand, 45717479 - 45717108
Alignment:
| Q |
14 |
acatcaagcctatctgtaatccaaatggtcaatgaactatcaatcttgttggctttgactattcttcttaattgcattcaacctgttctttcaggtaaat |
113 |
Q |
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| T |
45717479 |
acatcaagcttatctgtaatccaaatggtcaatgaactatcaatcttgttggcttttactattcttcttaattgcattcaacctgttctttcaggtaaat |
45717380 |
T |
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| Q |
114 |
ctctaataatatacttataatatagacactcaactccaatgtcagttttgtgaacttaatattacaatttttgatgctgtatttaccgattgtatctgtt |
213 |
Q |
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| T |
45717379 |
ctctaataatatacttataatatagacactcaactccaatgtcagttttgtgaacttaatattacaattttttatgctgtatttaccgattgtatctgtt |
45717280 |
T |
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| Q |
214 |
gtttttcgattttcaggcgttgcaattggatctggtcgtcaagcagtagtggcttatataaacattggtagttactacttggttggaatacctcttgggg |
313 |
Q |
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| T |
45717279 |
ggttttcgatttttaggcgttgcaattggatctggtcgtcaagcagtagtggcttatataaacattggtagttactacttggttggaatacctcttgggg |
45717180 |
T |
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| Q |
314 |
ttctcctaggctggctgctaccttccggcatagtggtgagtgtcatcacaaactaatattccactccattct |
385 |
Q |
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| T |
45717179 |
ttctcctaggctggctgctaccttccggcatagtggtaagtgtcatcacaaagtaatattccactccattct |
45717108 |
T |
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