View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_4 (Length: 561)
Name: NF8606A_low_4
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 28 - 561
Target Start/End: Complemental strand, 9125523 - 9124988
Alignment:
| Q |
28 |
cacacatggaggctaatttttaaactcttcagccaacaatctgtcttcactttgaaggatggnnnnnnngcatatcgcacaaactaactgtttggacccc |
127 |
Q |
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| T |
9125523 |
cacacatggaggctaatttttaaactcttcagccaacaatctgtcttcactttgaaggatggtttttttgcatatggcacaaactaactgtttggacccc |
9125424 |
T |
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| Q |
128 |
aaacccctctcccaatagttttcttatgacttcttctctttaatagcagtaaatactagggcatttaatgtggcacataaattttcccattgtggaagga |
227 |
Q |
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| T |
9125423 |
aaacccctctcccaatagttttcttatgacttcttctctttaatagcagtaaatactagggcatttaatgtggcacataaattttcccattgtggaagga |
9125324 |
T |
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| Q |
228 |
gaattttgctggtccatggaaccaaatgtatgaaaaagacgcagctacattgtttgaagttggaactttggccaaactttatactctcttgattgagtta |
327 |
Q |
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| T |
9125323 |
gaattttgctggtccatggaaccaaatgtatgaaaaagacgcagcaacattgtttgaagttggaactttggccaaactttatactctcttgattgagtta |
9125224 |
T |
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| Q |
328 |
catacattgttcaaattaaacagaaattaagatgttttatgctatgtgggtaaac--gtaatctagtatgctaattttacataacagaaaagaactcttt |
425 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9125223 |
catacattgttcaaattaaacagaaatttagatgttttatgctatgtgggtaaacgtgtaatctagtatgctaattttacataacagaaaagaactcttt |
9125124 |
T |
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| Q |
426 |
tgcctaaaaaatgaatcttctttttatagaaaagagaagnnnnnnnttaagtattgcatgcatgactcatgtcatcctaaccagtaaccacttaaaaact |
525 |
Q |
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| T |
9125123 |
tgcctaaaaaaggaatcttctttttatagaaaagagaagaaaaaaattaagtattgcatgcatgactcatgtcatcctaaccagtaaccacttaaaaact |
9125024 |
T |
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| Q |
526 |
tcttctgcaagtttcttcttgtcttcaaattcttgc |
561 |
Q |
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| T |
9125023 |
tcttctgcaagtttcttcttgtcttcaaattcttgc |
9124988 |
T |
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