View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_40 (Length: 388)
Name: NF8606A_low_40
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8700008 - 8699769
Alignment:
| Q |
1 |
agaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgatnnnnnnnnnngttttaaataagtattttc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8700008 |
agaactattatggattaagtttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataagtattttc |
8699909 |
T |
|
| Q |
101 |
tattctatcctagaatacttaatgagatggtgaggaatctcctacaagtcttgatttcaaatctagaagagttttgtgattcattgtgatgccttacccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8699908 |
tattctatcctagaatacttaatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgccttacccg |
8699809 |
T |
|
| Q |
201 |
acttaaggaattagtctatacactttgcacaaagataccc |
240 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
8699808 |
atttaaggaattagtttatacactttgcacagagataccc |
8699769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 14382892 - 14382932
Alignment:
| Q |
91 |
aagtattttctattctatcctagaatacttaatgagatggt |
131 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
14382892 |
aagtattttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 52773597 - 52773527
Alignment:
| Q |
1 |
agaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgat |
71 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52773597 |
agaactattacggactaactttgtaagcggttgaggcagctcctgaaattttattgcagtttttacttgat |
52773527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University