View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_42 (Length: 382)

Name: NF8606A_low_42
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_42
NF8606A_low_42
[»] chr1 (29 HSPs)
chr1 (7-201)||(50767536-50767747)
chr1 (202-370)||(20302198-20302367)
chr1 (202-370)||(51752104-51752273)
chr1 (202-370)||(13761577-13761745)
chr1 (210-349)||(16225895-16226034)
chr1 (202-344)||(47179428-47179570)
chr1 (202-370)||(51749778-51749947)
chr1 (230-370)||(6823651-6823792)
chr1 (202-370)||(10400201-10400369)
chr1 (202-349)||(47177078-47177224)
chr1 (235-370)||(28840451-28840586)
chr1 (202-340)||(23783238-23783376)
chr1 (235-370)||(15823319-15823454)
chr1 (235-370)||(28842266-28842401)
chr1 (202-319)||(6822775-6822893)
chr1 (201-307)||(20291279-20291386)
chr1 (230-319)||(16231369-16231458)
chr1 (235-370)||(13214854-13214989)
chr1 (235-370)||(3579991-3580126)
chr1 (305-349)||(23783362-23783406)
chr1 (202-284)||(47451405-47451488)
chr1 (309-365)||(28207444-28207500)
chr1 (259-370)||(41646717-41646828)
chr1 (289-344)||(30790793-30790848)
chr1 (235-284)||(38925915-38925965)
chr1 (295-344)||(13449947-13449996)
chr1 (254-370)||(39462310-39462426)
chr1 (235-319)||(49687334-49687418)
chr1 (322-370)||(47451508-47451556)
[»] chr4 (39 HSPs)
chr4 (204-370)||(51015042-51015208)
chr4 (202-370)||(11006612-11006781)
chr4 (202-370)||(9176867-9177035)
chr4 (202-349)||(16932213-16932360)
chr4 (210-370)||(37089745-37089906)
chr4 (200-349)||(22783170-22783319)
chr4 (200-344)||(16934572-16934716)
chr4 (202-349)||(22780805-22780952)
chr4 (210-370)||(24888598-24888758)
chr4 (202-370)||(9174517-9174684)
chr4 (239-370)||(31849970-31850101)
chr4 (202-357)||(36919971-36920125)
chr4 (204-370)||(22803104-22803270)
chr4 (202-370)||(38408993-38409161)
chr4 (202-370)||(5637839-5638006)
chr4 (199-370)||(36921866-36922036)
chr4 (235-370)||(22044760-22044897)
chr4 (202-370)||(3824944-3825112)
chr4 (202-319)||(7941133-7941251)
chr4 (259-370)||(11008963-11009075)
chr4 (202-319)||(11434769-11434887)
chr4 (202-344)||(18846923-18847067)
chr4 (254-370)||(5198266-5198382)
chr4 (235-370)||(48486146-48486281)
chr4 (235-340)||(9148087-9148192)
chr4 (289-370)||(22047055-22047135)
chr4 (235-319)||(22801262-22801346)
chr4 (256-370)||(24880299-24880413)
chr4 (307-370)||(52942818-52942881)
chr4 (235-340)||(52942869-52942974)
chr4 (306-370)||(619818-619882)
chr4 (235-285)||(22048492-22048542)
chr4 (233-370)||(40091786-40091923)
chr4 (255-370)||(24878836-24878951)
chr4 (328-370)||(47274647-47274689)
chr4 (295-344)||(16689331-16689380)
chr4 (296-344)||(8529012-8529060)
chr4 (326-370)||(11434873-11434917)
chr4 (326-370)||(22801232-22801276)
[»] chr2 (18 HSPs)
chr2 (210-370)||(19502382-19502542)
chr2 (210-370)||(27104523-27104683)
chr2 (201-366)||(19504720-19504885)
chr2 (202-349)||(36559211-36559358)
chr2 (202-349)||(24162604-24162752)
chr2 (202-340)||(36561539-36561677)
chr2 (202-349)||(45332528-45332675)
chr2 (235-370)||(21521066-21521201)
chr2 (235-370)||(42064264-42064399)
chr2 (235-370)||(6259186-6259321)
chr2 (294-370)||(13910415-13910491)
chr2 (210-319)||(43623968-43624077)
chr2 (235-370)||(22407780-22407915)
chr2 (305-349)||(36561488-36561532)
chr2 (326-370)||(43623938-43623982)
chr2 (305-340)||(36561518-36561553)
chr2 (254-319)||(6264546-6264611)
chr2 (235-284)||(40032503-40032553)
[»] chr3 (36 HSPs)
chr3 (202-342)||(6063866-6064006)
chr3 (202-370)||(22114674-22114842)
chr3 (201-349)||(50493675-50493823)
chr3 (202-349)||(38210067-38210214)
chr3 (202-343)||(53896613-53896754)
chr3 (202-349)||(18099560-18099707)
chr3 (203-370)||(5191374-5191541)
chr3 (218-331)||(10192401-10192513)
chr3 (219-351)||(5899476-5899608)
chr3 (261-370)||(10956396-10956505)
chr3 (218-331)||(10085481-10085593)
chr3 (259-351)||(25388654-25388746)
chr3 (202-319)||(35777163-35777280)
chr3 (202-333)||(18097291-18097422)
chr3 (201-319)||(38889756-38889875)
chr3 (202-351)||(5885983-5886133)
chr3 (201-370)||(32264412-32264581)
chr3 (235-370)||(1321194-1321329)
chr3 (235-370)||(5522984-5523119)
chr3 (235-319)||(11162924-11163008)
chr3 (235-370)||(26720301-26720436)
chr3 (286-370)||(10958692-10958776)
chr3 (235-317)||(11170178-11170260)
chr3 (202-285)||(7606880-7606963)
chr3 (202-319)||(6719532-6719651)
chr3 (260-319)||(6066195-6066254)
chr3 (304-370)||(3859350-3859416)
chr3 (235-370)||(24177032-24177167)
chr3 (295-370)||(45882752-45882827)
chr3 (200-250)||(3859315-3859365)
chr3 (326-370)||(35777266-35777309)
chr3 (295-344)||(4308676-4308725)
chr3 (325-370)||(10084762-10084807)
chr3 (325-370)||(10191682-10191727)
chr3 (326-370)||(6719502-6719546)
chr3 (326-370)||(38889861-38889905)
[»] scaffold0127 (1 HSPs)
scaffold0127 (202-349)||(12907-13054)
[»] chr8 (15 HSPs)
chr8 (202-349)||(43079347-43079494)
chr8 (202-341)||(43081722-43081861)
chr8 (202-349)||(18812668-18812815)
chr8 (235-370)||(27826815-27826950)
chr8 (235-370)||(27829126-27829261)
chr8 (235-370)||(12517397-12517532)
chr8 (202-349)||(18810483-18810630)
chr8 (202-370)||(44720617-44720785)
chr8 (210-370)||(14807556-14807716)
chr8 (210-370)||(15067785-15067945)
chr8 (235-340)||(28251988-28252093)
chr8 (202-370)||(15072506-15072674)
chr8 (230-319)||(3886322-3886412)
chr8 (235-319)||(4423868-4423952)
chr8 (305-370)||(28251937-28252002)
[»] chr6 (14 HSPs)
chr6 (202-349)||(26068735-26068882)
chr6 (202-370)||(14507546-14507716)
chr6 (235-370)||(19227780-19227915)
chr6 (202-349)||(26066464-26066611)
chr6 (202-349)||(33308685-33308832)
chr6 (202-349)||(33310954-33311101)
chr6 (235-370)||(8995288-8995423)
chr6 (235-370)||(9019735-9019870)
chr6 (202-349)||(29755132-29755279)
chr6 (210-370)||(11983400-11983558)
chr6 (259-370)||(4816639-4816749)
chr6 (235-351)||(15530512-15530628)
chr6 (288-370)||(30729199-30729281)
chr6 (295-344)||(26084818-26084867)
[»] chr7 (20 HSPs)
chr7 (202-349)||(1047356-1047503)
chr7 (202-370)||(3878322-3878490)
chr7 (202-349)||(2935070-2935217)
chr7 (202-349)||(9027540-9027687)
chr7 (202-349)||(22136878-22137025)
chr7 (202-349)||(40551905-40552052)
chr7 (202-349)||(22107867-22108014)
chr7 (202-349)||(40549627-40549774)
chr7 (201-370)||(27306600-27306768)
chr7 (202-319)||(40837144-40837261)
chr7 (235-370)||(35412-35547)
chr7 (235-370)||(44347-44482)
chr7 (239-370)||(25542317-25542448)
chr7 (202-319)||(26804345-26804462)
chr7 (235-370)||(18567396-18567531)
chr7 (235-370)||(31435418-31435553)
chr7 (235-316)||(1049699-1049780)
chr7 (326-370)||(26804448-26804492)
chr7 (295-344)||(40946167-40946216)
chr7 (289-370)||(42006404-42006484)
[»] chr5 (35 HSPs)
chr5 (202-349)||(34477485-34477632)
chr5 (235-370)||(38881878-38882013)
chr5 (202-370)||(31544798-31544966)
chr5 (202-349)||(10749505-10749652)
chr5 (202-319)||(2174680-2174797)
chr5 (202-370)||(31542442-31542610)
chr5 (202-349)||(10756960-10757107)
chr5 (202-349)||(15354918-15355065)
chr5 (202-349)||(15357194-15357341)
chr5 (210-351)||(4236378-4236519)
chr5 (202-319)||(34479855-34479972)
chr5 (202-319)||(39797849-39797966)
chr5 (235-370)||(16775930-16776065)
chr5 (201-349)||(23664833-23664981)
chr5 (201-349)||(23793606-23793754)
chr5 (202-349)||(23667109-23667256)
chr5 (201-319)||(25921874-25921993)
chr5 (259-349)||(31179807-31179897)
chr5 (293-370)||(21684832-21684909)
chr5 (202-319)||(38960487-38960604)
chr5 (235-319)||(659746-659829)
chr5 (257-337)||(659850-659929)
chr5 (235-370)||(21947803-21947935)
chr5 (200-284)||(18186504-18186589)
chr5 (202-319)||(31466379-31466496)
chr5 (235-319)||(2818729-2818813)
chr5 (202-266)||(21684905-21684969)
chr5 (235-338)||(20504316-20504419)
chr5 (235-370)||(20507833-20507968)
chr5 (295-344)||(39854317-39854366)
chr5 (295-344)||(42238047-42238096)
chr5 (295-343)||(1240171-1240219)
chr5 (295-351)||(4409890-4409946)
chr5 (202-250)||(31179885-31179933)
chr5 (330-370)||(39797956-39797996)
[»] scaffold0140 (2 HSPs)
scaffold0140 (202-349)||(21915-22062)
scaffold0140 (202-349)||(24190-24337)
[»] scaffold0250 (1 HSPs)
scaffold0250 (243-370)||(2670-2797)
[»] scaffold0025 (2 HSPs)
scaffold0025 (210-370)||(69665-69825)
scaffold0025 (210-319)||(73427-73536)
[»] scaffold0472 (1 HSPs)
scaffold0472 (202-349)||(5927-6074)
[»] scaffold0068 (2 HSPs)
scaffold0068 (293-370)||(29001-29078)
scaffold0068 (202-266)||(28941-29005)
[»] scaffold0131 (1 HSPs)
scaffold0131 (203-370)||(14768-14936)
[»] scaffold0339 (1 HSPs)
scaffold0339 (328-370)||(3872-3914)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 50767536 - 50767747
Alignment:
Q  7 gataatgaaatatgaatgaatggaatgagatagatggtgcatttttaaattgtacagatgaaaacaaaagacaaatggaataaggacgaaatattcatga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50767536 gataatgaaatatgaatgaatggaatgagatagatggtgcatttttaaattgtacagatgaaaacaaaagacaaatggaataaggacgaaatattcatga 50767635  T
Q  107 aaaata-----------------tcacaagggataccgtcataacatgttacattagtagnnnnnnngtaaattcacaaacatctttctctaactatata 189  Q
    ||||||                 ||||||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||    
T  50767636 aaaatatctctctcaggacgccttcacaagggataccgtcataacatgttacattactagtttttttgtaaattcacaaacatctttctctaactatata 50767735  T
Q  190 aaagttaattaa 201  Q
    ||||||||||||    
T  50767736 aaagttaattaa 50767747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 20302198 - 20302367
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgg-ggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  20302198 tgtgagagttaacttaaaatcagatttctgcagaatcgcggcatgatggcaaggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 20302297  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||    
T  20302298 aaaaattgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggcgaataacagaaacatatt 20302367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 51752104 - 51752273
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgg-ggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||||||||    
T  51752104 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 51752203  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| || |||||||||||| ||||    
T  51752204 aaaaatcgtggcacgatggggccgcatcgtggcacgatggtgcgctggcggcgaataacataaacgtatt 51752273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 13761577 - 13761745
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  13761577 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcatgatggaggtttcagtttttgaggcaaggcactgga 13761676  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||| |||||||||||| | |||| || ||||||| |||| ||||    
T  13761677 aaaatcgtggcacgatggggtcgcatcgcggcacgatggtgtgctggcggcgaataacagaaacgtatt 13761745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 210 - 349
Target Start/End: Original strand, 16225895 - 16226034
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgt 309  Q
    ||||||| ||||||| ||| |||| ||||||||||||| ||   |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  16225895 ttaacttaaaatcaggtttctgcagaatcgtggcacgacggttgggcaacgtggcacgatggaggttttagttttttgggcaaggcactggaaaaatcgt 16225994  T
Q  310 ggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  16225995 ggcacgatggggtcgcatcgtggcacgatggtgcgctggc 16226034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 202 - 344
Target Start/End: Original strand, 47179428 - 47179570
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| ||||||| ||||||||||||| |    
T  47179428 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgaa 47179527  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  47179528 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcg 47179570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 51749778 - 51749947
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgg-ggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||  ||| |||| ||||||||||||||||   |||||||||| ||||||||||||||||||||| | |||||||||||||    
T  51749778 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacgatggttgggcaacgtggtacgatggaggtttcagttttttgaggcaaggcactgg 51749877  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||| |||| ||||    
T  51749878 aaaaatcgtggcacgatggggtcgcatcgtggcacgatagtgcgctggcggcgaataacagaaacgtatt 51749947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 370
Target Start/End: Original strand, 6823651 - 6823792
Alignment:
Q  230 tgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgg-ggcaaggcactggaaaaatcgtggcacgatggggtcgcatc 328  Q
    |||| |||| |||||||||||   |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||    
T  6823651 tgcagaatcatggcacgatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactggaaaaatcgtggcatgatggggtcgcatc 6823750  T
Q  329 gtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||| |||| || |||||||||||| ||||    
T  6823751 gtggcacgatggtgcgctggcggcgaataacataaacgtatt 6823792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 10400369 - 10400201
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| |||  |||||||||||||| ||  |||||||||||||||| ||||||||||  ||| | ||||| |||||||    
T  10400369 tgtgagagttaacttaaaatcaggtttctgcggaatcgtggcacgattgctgggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactgg 10400271  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  10400270 aaatatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaataacataaacgtatt 10400201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 47177078 - 47177224
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| | |  |||||||||||||||||||||||| |||||||||| |||| |||||||    
T  47177078 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacgactgggcaacgtggcacgatggaggttttagtttttggg-caagacactgga 47177176  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  47177177 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 47177224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 28840451 - 28840586
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||| ||||||||||||| ||||||||||||    
T  28840451 aatcgtggcacgatggcaaggcaacgtggcacgattggaggtttcagtttttagg-caaggtactggaaaaattgtggcacgatgggatcgcatcgtggc 28840549  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||| | ||||||| || |||| |||||||||    
T  28840550 acgatggtgtgctggcagcgaaaaacagaaacatatt 28840586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 23783238 - 23783376
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  23783238 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 23783337  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 340  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23783338 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 23783376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 15823319 - 15823454
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||  ||| | ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  15823319 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactagaaaaatcgtggcacgatggggtcgcatcgtggc 15823417  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| | ||||||||||||| |||||||||    
T  15823418 acgatggtgcgctagcagcaaataacagaaacatatt 15823454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 28842266 - 28842401
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||    
T  28842266 aatcgtggcacgatggcaaggctacgtggcacgattggaggtttcagtttttagg-caaggtactggaaaaatcgtggcacgatgggatcgcatcgtggc 28842364  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||   ||||||| || |||| |||||||||    
T  28842365 acgatggtgtcctggcagcgaaaaacagaaacatatt 28842401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 6822775 - 6822893
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcag-tttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  ||||||||||||||||||||||||||| |||||| |||||||||||||    
T  6822775 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 6822874  T
Q  301 aaaaatcgtggcacgatgg 319  Q
    |||||||||||||||||||    
T  6822875 aaaaatcgtggcacgatgg 6822893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 20291279 - 20291386
Alignment:
Q  201 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcag-tttttggggcaaggcactg 299  Q
    |||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |||||||    
T  20291279 atgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggcaaggcaacgtggcacggtggaggtttcagttttttgaggcatggcactg 20291378  T
Q  300 gaaaaatc 307  Q
    ||||||||    
T  20291379 gaaaaatc 20291386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 16231369 - 16231458
Alignment:
Q  230 tgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  16231369 tgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaagacactggaaaaatcgtggcacgatgg 16231458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 13214854 - 13214989
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    ||||||||||||||||   |||||||||||||||| ||||||||||||||| | |||||| |||||||    |||||||| |||||| | ||| ||||||    
T  13214854 aatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcatgatgggattgcaacgtggc 13214952  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||| | ||||||||||||||| |||| ||||    
T  13214953 acgatggtgtgttggcagcaaataacaaaaacgtatt 13214989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 3580126 - 3579991
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| ||| ||||||||| ||| || ||| ||||||||| | | |||||| || |||||||||||||| ||| |||| | ||| ||||||    
T  3580126 aatcgtggcacgattgcagggcaacgtgacacaattggatgtttcagttat-gaggcaagtcattggaaaaatcgtggtacggtgggattgcaacgtggc 3580028  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| |||| || |||| ||||||| ||||    
T  3580027 acgatggtgcgctggcggcgaatatcataaacgtatt 3579991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 23783362 - 23783406
Alignment:
Q  305 atcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  23783362 atcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 23783406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 47451405 - 47451488
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgca-taatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttt 284  Q
    ||||||| ||||||||||||||||||| ||||  |||||||||||||||||  ||||| ||||||||| ||||||||||||||||    
T  47451405 tgtgagagttaacttcaaatcagattt-tgcagaaatcgtggcacgatggctgggcaatgtggcacgattggaggtttcagtttt 47451488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 28207500 - 28207444
Alignment:
Q  309 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaac 365  Q
    ||||||||||||||| || ||||||||||||||||| |||| || ||||||||||||    
T  28207500 tggcacgatggggtcacaacgtggcacgatggtgcgctggcggcgaataacataaac 28207444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 370
Target Start/End: Original strand, 41646717 - 41646828
Alignment:
Q  259 cgtggcacgatg-gaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaata 357  Q
    |||||||||||  |||||||||||||| | |||||| |||||||    |||||||||| |||| | ||| ||||||||||||||||  ||||||| ||||    
T  41646717 cgtggcacgattagaggtttcagtttt-gaggcaagtcactggatttttcgtggcacggtgggattgcaacgtggcacgatggtgcactggcagcgaata 41646815  T
Q  358 acataaacatatt 370  Q
    ||| |||||||||    
T  41646816 acagaaacatatt 41646828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 30790848 - 30790793
Alignment:
Q  289 gcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    ||||| ||||||||||| |||||||||||||| |||||  ||||||||||||||||    
T  30790848 gcaagtcactggaaaaaacgtggcacgatgggatcgcaatgtggcacgatggtgcg 30790793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 38925965 - 38925915
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttt 284  Q
    |||||||| ||||||||  ||||||||||||||| ||||||||||||||||    
T  38925965 aatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagtttt 38925915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 13449996 - 13449947
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||| |||||| || ||| |||||| ||||||||||||    
T  13449996 cactggaaaaatcgtgccacgattggatcgaatcgtgccacgatggtgcg 13449947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 370
Target Start/End: Original strand, 39462310 - 39462426
Alignment:
Q  254 ggcaacgtggcacgatg-gaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagc 352  Q
    ||||||||||||||||  |||||||||||||| | |||||| || ||||    ||||||||||||||| | |||  |||||||||||||||| | ||||     
T  39462310 ggcaacgtggcacgattagaggtttcagtttt-gaggcaagtcagtggatttttcgtggcacgatgggattgcaatgtggcacgatggtgcgcttgcagt 39462408  T
Q  353 aaataacataaacatatt 370  Q
     ||||||| |||| ||||    
T  39462409 gaataacagaaacgtatt 39462426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 49687334 - 49687418
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    |||||||||| ||||||  ||||||||||||| | |||||||||||| ||||| |||||| |||||||    ||||||||||||||    
T  49687334 aatcgtggcatgatggctgggcaacgtggcacaattggaggtttcag-ttttgaggcaagtcactggatttttcgtggcacgatgg 49687418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 47451508 - 47451556
Alignment:
Q  322 tcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||||||| || |||| ||||||| |||| ||||    
T  47451508 tcgcatcgtggcacgatggtgcgctgacagcgaataacagaaacgtatt 47451556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 51015042 - 51015208
Alignment:
Q  204 tgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaa 303  Q
    ||||| ||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  51015042 tgagagttaacttaaaatcagatttctgcagaatcgtggcatgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactggaaa 51015141  T
Q  304 aatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  51015142 aattgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaataacagaaacatatt 51015208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 11006781 - 11006612
Alignment:
Q  202 tgtgagatttaacttcaaatcagattt-atgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| ||||| |||||||||||||| ||  |||||||||||||||||||||||||| |||||  |||||||||||||    
T  11006781 tgtgagagttaacttaaaatcaggttttatgcagaatcgtggcacgatcgctgggcaacgtggcacgatggaggtttcaattttttaggcaaggcactgg 11006682  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  11006681 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaaaaacagaaacatatt 11006612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 9177035 - 9176867
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| ||  ||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  9177035 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggttaggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 9176936  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||  || |||| |||||||||    
T  9176935 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcagggaaaaacagaaacatatt 9176867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 16932360 - 16932213
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  16932360 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 16932261  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  16932260 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 16932213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 370
Target Start/End: Complemental strand, 37089906 - 37089745
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatg-gaggtttcagtttttggggcaaggcactggaaaaatcg 308  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||| |||||||  ||  |||||||||||||||||    
T  37089906 ttaacttaaaatcagatttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatgagatgttttagttttttaggtgaggcactggaaaaatcg 37089807  T
Q  309 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||||||||||| |||| || ||||||| |||| ||||    
T  37089806 tggcacgatggggtcgcatcgtggcacgatggtgcgctggcggcgaataacagaaacgtatt 37089745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 200 - 349
Target Start/End: Complemental strand, 22783319 - 22783170
Alignment:
Q  200 aatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactg 299  Q
    ||||||||| ||||||| ||||||| ||| |||| |||||||| ||||| ||  |||||||||||||||||||||||| ||||||| |||||||||||||    
T  22783319 aatgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactg 22783220  T
Q  300 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  22783219 gaaaaatcatggcacgatggggtctcatcgtggcacgatggtgcgctggc 22783170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 200 - 344
Target Start/End: Complemental strand, 16934716 - 16934572
Alignment:
Q  200 aatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactg 299  Q
    ||||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||| ||||||||||||||||| ||||||| |||||||||||||    
T  16934716 aatgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacatggcacgatggaggttttagttttttgggcaaggcactg 16934617  T
Q  300 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  16934616 gaaaaatcgtggcacgatggggtctcatcctggcacgatggtgcg 16934572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 22780952 - 22780805
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||| ||||| ||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  22780952 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 22780853  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||| ||||||||||||||| ||| |||||||||||||||| ||||    
T  22780852 aaaatcatggcacgatggggtctcattgtggcacgatggtgcgctggc 22780805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 370
Target Start/End: Original strand, 24888598 - 24888758
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcg 308  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||||||  ||| | ||||| |||||||||||||||    
T  24888598 ttaacttaaaatcagatttctgcagaattgtggcacgatggctaggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcg 24888696  T
Q  309 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||| ||||||||||||||||||||| | ||||||| || |||| |||||||||    
T  24888697 tggcacgatgggatcgcatcgtggcacgatggtgtgctggcagcgaaaaacagaaacatatt 24888758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 9174684 - 9174517
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||  |||| ||||||||||||| ||| ||||||||| ||||||||||||||| ||||| |  ||||||||||||||    
T  9174684 tgtgagagttaacttaaaatcaggttc-tgcagaatcgtggcacgacggctaggcaacgtagcacgatggaggttttagtttattaggcaaggcactgga 9174586  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||||  || |||| |||||||||    
T  9174585 aaaatcatggcacgatggggtctcatcgtggcacgatggtgcgctggcagggaaaaacagaaacatatt 9174517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 31850101 - 31849970
Alignment:
Q  239 gtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacga 337  Q
    |||||||||| ||  |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31850101 gtggcacgattgctgggcaacgtggcacgattggaggtttcagtttt-ggggcaaggcactggaaaaatcttggcacgatggggtcgcatcgtggcacga 31850003  T
Q  338 tggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||| ||||||| || |||| |||||||||    
T  31850002 tggtgcgctggcagcgaaaaacagaaacatatt 31849970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 202 - 357
Target Start/End: Complemental strand, 36920125 - 36919971
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||  |||| |||||||||||||||||  |||||||||||||||| |||||||||| |||| | |||||| ||||||    
T  36920125 tgtgagagttaacttaaaatcaggttc-tgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaatttt-gaggcaagtcactgg 36920028  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaata 357  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  36920027 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaata 36919971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 22803270 - 22803104
Alignment:
Q  204 tgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaa 302  Q
    ||||| ||||||| |||||| |||| |  | |||||||| ||||||||  |||||||||||||||| ||||||||||||||| | || ||||||||||||    
T  22803270 tgagagttaacttaaaatcaaatttctatagaatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagtttt-gaggaaaggcactggaa 22803172  T
Q  303 aaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||    
T  22803171 aaatcgtggctcgatggggtcgcatcgtggcacgatggtgcgctggcagcgaataacaaaaacgtatt 22803104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 38408993 - 38409161
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| |||| |||||| |||| |||||||||||||| ||  |||| ||||||||||| ||||||||||  ||| | ||||| |||||||    
T  38408993 tgtgagagttaacttaaaattagatttctgcagaatcgtggcacgattgctgggcatcgtggcacgattggaggtttcaagttt-gaggcaaagcactgg 38409091  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| || || |||| |||||||||    
T  38409092 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgttggcggcgaaaaacagaaacatatt 38409161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 5638006 - 5637839
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||  |||||||||||||| ||  ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  5638006 tgtgagagttaacttaaaatcaggtttctgcggaatcgtggcacgattgctgggcaacgtggcacgatggaggtttcag-ttttgaggcaaggcactgga 5637908  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||| || ||||||||| ||||||||||||| ||||||| | ||||||| || |||| |||| ||||    
T  5637907 aaaatcatgtcacgatgggatcgcatcgtggcatgatggtgagctggcagcgaaaaacagaaacgtatt 5637839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 199 - 370
Target Start/End: Complemental strand, 36922036 - 36921866
Alignment:
Q  199 taatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcac 297  Q
    |||||||||| ||||||| ||||||| ||  |||| |||||||| ||||||||  |||||| ||||||||| ||||||||||||||| | |||||| |||    
T  36922036 taatgtgagagttaacttaaaatcaggttc-tgcaaaatcgtggtacgatggctgggcaacatggcacgattggaggtttcagtttt-gaggcaagtcac 36921939  T
Q  298 tggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||||||| |||| ||||    
T  36921938 tggaaaaatcgtggcacgatggggtcgcattgtggcacgatggtgcattggcagcgaataacagaaacgtatt 36921866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 22044897 - 22044760
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttt--ggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtgg 332  Q
    |||||||||||||| | | |||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||||||| |||||||||||    
T  22044897 aatcgtggcacgattgaagggcaacgtggcacgatggaggtttcattttttttgaggcaaggcactggaaaaatcgtggcacgatgggatcgcatcgtgg 22044798  T
Q  333 cacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||| | ||||||  || |||| |||||||||    
T  22044797 cacgatggtgtgctggcagggaaaaacagaaacatatt 22044760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 3825112 - 3824944
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||| |||||||||  |||||| ||||||||| ||||||||||||||| | ||||| |||||||    
T  3825112 tgtgagagttaacttaaaatcaggtttctgcagaatcgtgacacgatggctgggcaacatggcacgattggaggtttcagtttt-gaggcaaagcactgg 3825014  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||||  | ||||||| |||| ||||    
T  3825013 aaaaatcatggcacaatggggtcgcatcgtggcacgatggtgcgttggcgacgaataacagaaacgtatt 3824944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 7941133 - 7941251
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcag-tttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  ||||||||||||||||||||||||||| |||||| |||||||||||||    
T  7941133 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 7941232  T
Q  301 aaaaatcgtggcacgatgg 319  Q
    |||||| ||||||||||||    
T  7941233 aaaaatggtggcacgatgg 7941251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 259 - 370
Target Start/End: Complemental strand, 11009075 - 11008963
Alignment:
Q  259 cgtggcacgatggaggtttcagtttttgg-ggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaata 357  Q
    |||||||| |||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |    
T  11009075 cgtggcacaatggaggtttcaatttttttaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcactggcagcaaaaa 11008976  T
Q  358 acataaacatatt 370  Q
    ||| |||||||||    
T  11008975 acagaaacatatt 11008963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 11434769 - 11434887
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcag-tttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||| ||||||||  ||||||||||||||||||||||||||| |||||| |||||| ||||||    
T  11434769 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaagacactgg 11434868  T
Q  301 aaaaatcgtggcacgatgg 319  Q
    |||||||||||||||||||    
T  11434869 aaaaatcgtggcacgatgg 11434887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 344
Target Start/End: Original strand, 18846923 - 18847067
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttat--gcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcact 298  Q
    ||||||| ||||||| ||||||||||| |  ||| |||||||||||||| |   || | ||||||||||| ||||||||||||||| | ||||||| |||    
T  18846923 tgtgagagttaacttaaaatcagatttttctgcagaatcgtggcacgattgttgggaatcgtggcacgattggaggtttcagtttt-gaggcaaggtact 18847021  T
Q  299 ggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  18847022 ggaaaaatcgtggtacgatggggtcgcatcgtggcacgatggtgcg 18847067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 370
Target Start/End: Original strand, 5198266 - 5198382
Alignment:
Q  254 ggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagc 352  Q
    |||||||||||||||| |||| |||||  ||| | ||||| || |||||||||||||||||||||||| || |||||||||||||||||||| |||||||    
T  5198266 ggcaacgtggcacgattggagatttcaagttt-gaggcaaagctctggaaaaatcgtggcacgatgggatcacatcgtggcacgatggtgcgctggcagc 5198364  T
Q  353 aaataacataaacatatt 370  Q
     || |||| |||||||||    
T  5198365 gaaaaacagaaacatatt 5198382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 48486146 - 48486281
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||   ||||||||||||||| ||||||||||||||| | |||||| |||||||    |||||||||||||||||| ||  |||||    
T  48486146 aatcgtggcacgatggctgagcaacgtggcacgattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcacgatggggtcacaatgtggc 48486244  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    || |||||||| ||||||| ||||||| |||| ||||    
T  48486245 acaatggtgcgctggcagcgaataacagaaacgtatt 48486281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 9148087 - 9148192
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||| ||||| ||  ||||||||||| |||| ||||||||||  ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  9148087 aatcgtggtacgattgctgggcaacgtggcgcgattggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatggggttgcatcgtggc 9148185  T
Q  334 acgatgg 340  Q
    |||||||    
T  9148186 acgatgg 9148192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 22047135 - 22047055
Alignment:
Q  289 gcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||  || |||| |||||||||    
T  22047135 gcaaggcactggaaaaatc-tggcacgatgggatcgcatcgtggcacgatggtgtgctggcagggaaaaacagaaacatatt 22047055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 22801346 - 22801262
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    ||||||||||||||||   ||||||||| |||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  22801346 aatcgtggcacgatggttgggcaacgtgacacgattggaggtttcagtttt-gaggcaaggaactggaaaaatcgtggcacgatgg 22801262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 370
Target Start/End: Original strand, 24880299 - 24880413
Alignment:
Q  256 caacgtggcacga-tggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaa 354  Q
    ||||||||||||| |||||||||||||||| | |||||| |||||||    ||| ||||||||||| | ||| ||||||||||||||||| ||||||| |    
T  24880299 caacgtggcacgaatggaggtttcagtttt-gaggcaagtcactggatttttcgcggcacgatgggattgcaacgtggcacgatggtgcgctggcagcga 24880397  T
Q  355 ataacataaacatatt 370  Q
    |||||| |||| ||||    
T  24880398 ataacagaaacgtatt 24880413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 52942881 - 52942818
Alignment:
Q  307 cgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||| || |||||||||||| |||| ||||||| |||||||||||||||||    
T  52942881 cgtggcacgatggggtcacaacgtggcacgatgatgcgctggcagcgaataacataaacatatt 52942818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 52942974 - 52942869
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    ||||||||||||||||   |||||||||||||||| ||||||||||| ||| | |||||| ||||| | |  |||||||||||||||||| || ||||||    
T  52942974 aatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagcttt-gaggcaagtcactgaatatttcgtggcacgatggggtcacaacgtggc 52942876  T
Q  334 acgatgg 340  Q
    |||||||    
T  52942875 acgatgg 52942869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 619882 - 619818
Alignment:
Q  306 tcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||||| |||||||| |||||||| |||| || ||||||| |||||||||    
T  619882 tcgtggcacgatggggtcgcaacgtggcacaatggtgcgctggcggcgaataacagaaacatatt 619818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 22048542 - 22048492
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttt 285  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  22048542 aatcgtggcacgattgaagggcaacgtggcacgatggaggtttcagttttt 22048492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 370
Target Start/End: Complemental strand, 40091923 - 40091786
Alignment:
Q  233 ataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtg 331  Q
    |||||||||||||| |||   || ||||||||||||| |||| |||||||||| |  | ||| || ||||||||||||| || |||||||||||| ||||    
T  40091923 ataatcgtggcacggtggttgggtaacgtggcacgattggagatttcagtttt-gaagtaagccattggaaaaatcgtgccatgatggggtcgcaacgtg 40091825  T
Q  332 gcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
     |||||||||||  || |||| |||||| ||||| ||||    
T  40091824 acacgatggtgcactgacagcgaataacgtaaacgtatt 40091786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 370
Target Start/End: Original strand, 24878836 - 24878951
Alignment:
Q  255 gcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagca 353  Q
    ||||||||||||||| ||||||||||||||| |  ||||| |||||||    ||||||||||||||| | ||| |||||||||||||| || ||||| |     
T  24878836 gcaacgtggcacgattggaggtttcagtttt-gacgcaagtcactggatttttcgtggcacgatgggattgcaacgtggcacgatggtacgctggcatcg 24878934  T
Q  354 aataacataaacatatt 370  Q
    ||||||| |||| ||||    
T  24878935 aataacagaaacgtatt 24878951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 47274647 - 47274689
Alignment:
Q  328 cgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||    
T  47274647 cgtggcacgatggtgcgatggcagcgaataacataaacgtatt 47274689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 16689380 - 16689331
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||| |||||||   ||||| |||||||||||||||||    
T  16689380 cactggaaaaatcgtgccacgatgaaatcgcaacgtggcacgatggtgcg 16689331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 8529012 - 8529060
Alignment:
Q  296 actggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    ||||||||||||||| |||||||  | ||||||||| ||||||||||||    
T  8529012 actggaaaaatcgtgccacgatgaagccgcatcgtgccacgatggtgcg 8529060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 11434873 - 11434917
Alignment:
Q  326 atcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||| ||||||| || |||| |||||||||    
T  11434873 atcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatt 11434917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 22801276 - 22801232
Alignment:
Q  326 atcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||  |||||||||||||| |||| ||||    
T  22801276 atcgtggcacgatggtgcgccggcagcaaataacagaaacgtatt 22801232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 210 - 370
Target Start/End: Complemental strand, 19502542 - 19502382
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgt 309  Q
    ||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  19502542 ttaacttaaaatcaggtttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactggaaaaatcgt 19502443  T
Q  310 ggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||||||||||||||||||| ||||  | ||||||| |||||||||    
T  19502442 ggcacgatggggtcgcatcgtggcacgatggtgcgctggcgacgaataacagaaacatatt 19502382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 210 - 370
Target Start/End: Original strand, 27104523 - 27104683
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgt 309  Q
    ||||||| ||||||||||| |||| |||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27104523 ttaacttaaaatcagatttctgcagaatcgtggcacgattgaagggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgt 27104622  T
Q  310 ggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||||||||||||||||||||| ||||||  || ||||||||||||||    
T  27104623 ggcacgatgggatcgcatcgtggcacgatggtgcgctggcagggaaaaacataaacatatt 27104683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 201 - 366
Target Start/End: Complemental strand, 19504885 - 19504720
Alignment:
Q  201 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgg 300  Q
    |||||| | ||||||| ||||||| |||  ||| |||| |||||||||||||||||||||||||||||||||||||| | |||||  |||||||||||||    
T  19504885 atgtgaaagttaacttaaaatcaggtttcagcagaatcatggcacgatggcaaggcaacgtggcacgatggaggttttaattttttaggcaaggcactgg 19504786  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaaca 366  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  | ||||||| |||||    
T  19504785 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcgacgaataacagaaaca 19504720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 36559358 - 36559211
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  36559358 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 36559259  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36559258 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 36559211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 24162752 - 24162604
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgg-ggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||  ||| |||| ||||||||||| ||||   |||||||||||||||||||||||||||||||| | |||||||||||||    
T  24162752 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacaatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 24162653  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  24162652 aaaaatcgtggcacgatggggtcgcatcgtggcacgattgtgcgctggc 24162604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 340
Target Start/End: Complemental strand, 36561677 - 36561539
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  |  |||||||||||||||| ||||||| |||||||||||||||    
T  36561677 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcacggcacgatggaggttttagttttttgggcaaggcactgga 36561578  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 340  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36561577 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 36561539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 45332675 - 45332528
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| ||||||| |||||||| ||||||    
T  45332675 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggaactgga 45332576  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  45332575 aaaatcgtggaacgatggggtcacatcgtggcacgatggtgcgctggc 45332528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 21521201 - 21521066
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||| |  ||||| |||||||||||||||| ||||||||| ||||| ||||||    
T  21521201 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttt-gaagcaagccactggaaaaatcgtgccacgatgggatcgcaacgtggc 21521103  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||||| |||||||||||| ||||    
T  21521102 acgatggtgcgctggcagcgaataacataaacgtatt 21521066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 42064264 - 42064399
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| ||  |||||||||| |||| |||||||||||  ||| | ||||| ||||||||||||||||||||||||||| || |||||||||    
T  42064264 aatcgtggcacgattgctgggcaacgtggtacgactggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatgggatcacatcgtggc 42064362  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||||| || |||| |||||||||    
T  42064363 acgatggtgcgctggcagcgaaaaacagaaacatatt 42064399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 6259321 - 6259186
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||   |||||||||||| || ||| ||||||||||| | || ||| |||||||||||||||||||||||||| ||||| |||| |    
T  6259321 aatcgtggcacgatggctgtgcaacgtggcactattggatgtttcagtttt-gaggaaagtcactggaaaaatcgtggcacgatgggatcgcaacgtgac 6259223  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| |||| |  ||||||| |||||||||    
T  6259222 acgatggtgcgctggcggtgaataacagaaacatatt 6259186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 13910491 - 13910415
Alignment:
Q  294 gcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||| |||||||||    
T  13910491 gcactggaaaaatcgtggcacgatggggtcgcattgtggcacgatggtgcgctggcagcgaaaaacagaaacatatt 13910415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 319
Target Start/End: Complemental strand, 43624077 - 43623968
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcg 308  Q
    ||||||| ||||||| ||| |||| |||| ||||||||||||  |||||| ||||||||| ||||||||||||||| | |||||||||||| ||||||||    
T  43624077 ttaacttaaaatcaggtttctgcagaatcatggcacgatggctgggcaacatggcacgattggaggtttcagtttt-gaggcaaggcactgaaaaaatcg 43623979  T
Q  309 tggcacgatgg 319  Q
    |||||||||||    
T  43623978 tggcacgatgg 43623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 22407915 - 22407780
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| | | || ||| ||||||||| ||| ||||||||||| | |||||| || || |||||| ||||||||||||| || || ||||||    
T  22407915 aatcgtggcacgattgaagggtaacatggcacgattggatgtttcagtttt-gaggcaagtcagtgaaaaaattgtggcacgatgggatcacaacgtggc 22407817  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||||| ||||||| |||| ||||    
T  22407816 acgatggtgcgttggcagcgaataacagaaacgtatt 22407780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 36561532 - 36561488
Alignment:
Q  305 atcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  36561532 atcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 36561488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 43623982 - 43623938
Alignment:
Q  326 atcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||    
T  43623982 atcgtggcacgatggtgcgctggcagcaaataacataaacgtatt 43623938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 36561553 - 36561518
Alignment:
Q  305 atcgtggcacgatggggtcgcatcgtggcacgatgg 340  Q
    ||||||||||||||||||||||||||||||||||||    
T  36561553 atcgtggcacgatggggtcgcatcgtggcacgatgg 36561518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 6264611 - 6264546
Alignment:
Q  254 ggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    |||||||||||| ||| ||| ||||||||||| | |||||| |||||||||||||||||||||||||    
T  6264611 ggcaacgtggcatgattggatgtttcagtttt-gaggcaagtcactggaaaaatcgtggcacgatgg 6264546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 40032553 - 40032503
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttt 284  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  40032553 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttt 40032503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 6064006 - 6063866
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |    
T  6064006 tgtgagaattaacttaaaatcaggtttatgcagaatcgtggcacgatggcaaggcaacgtggcacaatggaggttttagttttttgggcaaggcactgaa 6063907  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtg 342  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6063906 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtg 6063866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 22114842 - 22114674
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| || | ||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22114842 tgtgagagttaacttaaaatcaggtttctgtagaatcgtggcacgatggttgggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 22114743  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||| ||||    
T  22114742 aaaattgtggcacgatggggtcgcatcgtggcacgatggtgcgatggcggcgaataacagaaacgtatt 22114674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 201 - 349
Target Start/End: Original strand, 50493675 - 50493823
Alignment:
Q  201 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgg 300  Q
    |||||||| ||||||| ||||||| ||| |||| |||||||||||||| ||  |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  50493675 atgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgg 50493774  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  50493775 aaaaatcgtggcacgatggagtctcatcgtggcacgatggtgcgctggc 50493823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 38210067 - 38210214
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  38210067 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 38210166  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  38210167 aaaatcgtggcacgatggggtctcatcgtggcacgatagtgcgctggc 38210214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 202 - 343
Target Start/End: Complemental strand, 53896754 - 53896613
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||| ||  |||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  53896754 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgattgctgggcaacgtggcacgatggaggttttagttttttgggcaaggtactgga 53896655  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgc 343  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  53896654 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgc 53896613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 18099707 - 18099560
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||||| ||||||||||||||| | |||||| ||||||    
T  18099707 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttt-gaggcaagacactgg 18099609  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18099608 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 18099560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 203 - 370
Target Start/End: Original strand, 5191374 - 5191541
Alignment:
Q  203 gtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactgga 301  Q
    |||||| ||||||| ||||||||||| |||| |||||||||||||| ||  |||| ||||||||||| ||||||||||||||| | ||||||| ||||||    
T  5191374 gtgagagttaacttaaaatcagatttctgcagaatcgtggcacgattgctgggcatcgtggcacgattggaggtttcagtttt-gaggcaaggtactgga 5191472  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||| || |||| |||||||||    
T  5191473 aaaatcgtggcacgatgggatctcatcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatt 5191541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 218 - 331
Target Start/End: Complemental strand, 10192513 - 10192401
Alignment:
Q  218 aaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgat 317  Q
    |||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  10192513 aaatcagatttatgcggaatcgtggcacgatcgcaaggcaacgtggcacgatggaggtttcag-ttttgaggcaaggcactggaaaaatcgtggcacgat 10192415  T
Q  318 ggggtcgcatcgtg 331  Q
    ||| ||||||||||    
T  10192414 gggatcgcatcgtg 10192401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 5899476 - 5899608
Alignment:
Q  219 aatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatg 318  Q
    |||||| ||| ||||||||| ||||||||| | | ||||||||||||||||||| |||| |||||||  |||||||||||||||||||| ||||||||||    
T  5899476 aatcaggtttctgcataatcatggcacgattgaagggcaacgtggcacgatggatgttttagttttttaggcaaggcactggaaaaatcatggcacgatg 5899575  T
Q  319 gggtcgcatcgtggcacgatggtgcggtggcag 351  Q
    |||||||||||||||||||||||||| ||||||    
T  5899576 gggtcgcatcgtggcacgatggtgcgctggcag 5899608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 10956505 - 10956396
Alignment:
Q  261 tggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataac 359  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  10956505 tggcacgattggaggtttcagtttt-ggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaataac 10956407  T
Q  360 ataaacatatt 370  Q
    |||||| ||||    
T  10956406 ataaacgtatt 10956396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 218 - 331
Target Start/End: Complemental strand, 10085593 - 10085481
Alignment:
Q  218 aaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgat 317  Q
    |||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  10085593 aaatcagatttatgcggaatcgtggcatgatcgcaaggcaacgtggcacgatggaggtttcag-ttttgaggcaaggcactggaaaaatcgtggcacgat 10085495  T
Q  318 ggggtcgcatcgtg 331  Q
    ||| || |||||||    
T  10085494 gggatcacatcgtg 10085481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 25388654 - 25388746
Alignment:
Q  259 cgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcag 351  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  25388654 cgtggcacgatggaggttttagttttttgggcaaggcactggaaaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcag 25388746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 35777163 - 35777280
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| |||| |||||| |||| |||||||||||||  ||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  35777163 tgtgagagttaacttaaaattagatttctgcagaatcgtggcacgacagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 35777262  T
Q  302 aaaatcgtggcacgatgg 319  Q
    ||||||||||||||||||    
T  35777263 aaaatcgtggcacgatgg 35777280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 202 - 333
Target Start/End: Complemental strand, 18097422 - 18097291
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  ||||||||||||||| |||||||||||| ||||| |||||||||  ||    
T  18097422 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcag-ttttgaggcaaggcatagg 18097324  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    ||||||||||||||||||||||||||| |||||    
T  18097323 aaaaatcgtggcacgatggggtcgcatagtggc 18097291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 38889756 - 38889875
Alignment:
Q  201 atgtgagatttaacttcaaatcagattta-tgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactg 299  Q
    |||||||| ||||||| |||| || |||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||    
T  38889756 atgtgagagttaacttaaaattaggttttctgcagaatcgtggtacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcattg 38889855  T
Q  300 gaaaaatcgtggcacgatgg 319  Q
    ||||||||||||||||||||    
T  38889856 gaaaaatcgtggcacgatgg 38889875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 202 - 351
Target Start/End: Original strand, 5885983 - 5886133
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaa-cgtggcacgatggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| |||| || ||| | || |||||||||||||| | |  |||| |||||||||||||| |||| |||||||  ||||||| |||||    
T  5885983 tgtgagagttaacttaaaattaggtttttacagaatcgtggcacgattgaagcgcaaacgtggcacgatggatgttttagttttttaggcaaggtactgg 5886082  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcag 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  5886083 aaaaatcgtggcacgatggggtcgcatcgtggtacgatggtgcgctggcag 5886133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 370
Target Start/End: Complemental strand, 32264581 - 32264412
Alignment:
Q  201 atgtgagatttaacttcaaatcagatttatgcataa-tcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcact 298  Q
    |||||||| ||||||| ||||||| ||| |||| || |||||||||||||||  || ||||||||||||| ||||||||||||||||| |||||| ||||    
T  32264581 atgtgagagttaacttaaaatcaggttt-tgcagaaatcgtggcacgatggctggg-aacgtggcacgattggaggtttcagtttttgaggcaagtcact 32264484  T
Q  299 ggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||    ||||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||| |||||||||    
T  32264483 ggatttttcgtggcacgatgggcttgcaacgtggcacgatggtgcgctggcagcgaataacagaaacatatt 32264412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 1321194 - 1321329
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatg-gaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||  ||| | ||||| |||||| |||||||||||||||||||||||||||||||||    
T  1321194 aatcgtggcacgattgctgggcaacgtggcacgattagaggtttcaagttt-gaggcaaagcactgaaaaaatcgtggcacgatggggtcgcatcgtggc 1321292  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||| | ||||||| || |||| |||||||||    
T  1321293 acgatggtgtgctggcagcgaaaaacagaaacatatt 1321329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 5523119 - 5522984
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||| ||| ||  |||||| ||||||||| || |||||||||||| | ||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  5523119 aatcgtggcaagattgctgggcaacatggcacgattggtggtttcagtttt-gaggcaaggtactggaaaaatcgtggcacaatgggatcgcatcgtggc 5523021  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||||| || |||| |||||||||    
T  5523020 acgatggtgcgctggcagcgaaaaacagaaacatatt 5522984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 11162924 - 11163008
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  11162924 aatcgtggcacgattgctgggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaattgtggcacgatgg 11163008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 26720301 - 26720436
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||   ||||||||||| ||| ||||||||||  ||| | ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  26720301 aatcgtggcacgatggctgagcaacgtggcaggattggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatgggatcgcatcgtggc 26720399  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||| | ||||||| || |||| |||||||||    
T  26720400 acgatggtgtgctggcagcgaaaaacagaaacatatt 26720436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 10958776 - 10958692
Alignment:
Q  286 ggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||    
T  10958776 ggggaaagacactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagccaataacagaaacgtatt 10958692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 11170178 - 11170260
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgat 317  Q
    |||||||||||| | ||  ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  11170178 aatcgtggcacggttgctgggcaacgtggcacgatggaggtttcggtttttgaggcaaggcactggaaaaatcgtggctcgat 11170260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 7606963 - 7606880
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttt 285  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||    
T  7606963 tgtgagagttaacttaaaatcaggtttctgcagaatcgtgacacgatggctgggcaacgtggcacgatggaggtttcagttttt 7606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 319
Target Start/End: Complemental strand, 6719651 - 6719532
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat---ggaggtttcagtttttggggcaaggcact 298  Q
    ||||||| ||||||| ||||||| ||| ||| ||||||||||||||| | | |||| |||||||||||    |||||||||||||||  ||||| |||||    
T  6719651 tgtgagaattaacttaaaatcaggtttctgcttaatcgtggcacgattgaagggcatcgtggcacgattggagaggtttcagttttt-aggcaatgcact 6719553  T
Q  299 ggaaaaatcgtggcacgatgg 319  Q
    |||||||||||||||||||||    
T  6719552 ggaaaaatcgtggcacgatgg 6719532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 6066254 - 6066195
Alignment:
Q  260 gtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||    
T  6066254 gtggcacgatggaggttttagttttttgggcaaggcactggaaacatcgtggcacgatgg 6066195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 3859350 - 3859416
Alignment:
Q  304 aatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |||||| ||||    
T  3859350 aatcgtggcacgatggggtcacatcgtggcacgatggtgcgctggcggcgaataatataaacgtatt 3859416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 24177032 - 24177167
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||| | ||| |||||||||||||||| ||  ||||||||| | |  ||||| |||||||||||  ||||||||||||| |||||  |||||    
T  24177032 aatcgtggcacgtttgcagggcaacgtggcacgattggttgtttcagttct-gaagcaagtcactggaaaaaatgtggcacgatgggatcgcaatgtggc 24177130  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| |||  || || ||||||||| ||||    
T  24177131 acgatggtgcgttggaggcgaaaaacataaacgtatt 24177167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 45882752 - 45882827
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||||||| || || | ||||||| |||| ||||    
T  45882752 cactggaaaaatcgtgccacgatgggattgcaacgtggcacgatggtgcgctgacaacgaataacagaaacctatt 45882827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 3859315 - 3859365
Alignment:
Q  200 aatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatgg 250  Q
    ||||||||| ||||||| ||||||| ||| |||||||||||||||||||||    
T  3859315 aatgtgagagttaacttaaaatcaggtttctgcataatcgtggcacgatgg 3859365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 35777266 - 35777309
Alignment:
Q  326 atcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  35777266 atcgtggcacgatggtgcgctggcagcaaa-aacataaacatatt 35777309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 4308725 - 4308676
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||| |||||| || ||| |||||| ||||||||||||    
T  4308725 cactggaaaaatcgtgccacgattggatcgaatcgtgccacgatggtgcg 4308676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 10084807 - 10084762
Alignment:
Q  325 catcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||| ||||||| || |||| |||||||||    
T  10084807 catcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatt 10084762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 10191727 - 10191682
Alignment:
Q  325 catcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||| ||||||| || |||| |||||||||    
T  10191727 catcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatt 10191682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 6719546 - 6719502
Alignment:
Q  326 atcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||| |||| || ||||||| |||||||||    
T  6719546 atcgtggcacgatggtgcgctggcggcgaataacagaaacatatt 6719502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 38889861 - 38889905
Alignment:
Q  326 atcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||| |||| || ||||||| |||||||||    
T  38889861 atcgtggcacgatggtgcgctggcggcgaataacagaaacatatt 38889905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 13054 - 12907
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  13054 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatgtcaaggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 12955  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  12954 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 43079347 - 43079494
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  43079347 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 43079446  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  43079447 aaaatcgtggtacgatggggtctcatcgtggcacgatggtgcgctggc 43079494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 43081722 - 43081861
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||    
T  43081722 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaaagtggcacgatggaggttttagttttttgggcaaggcactgga 43081821  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggt 341  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  43081822 aaaatcgtggcacgatggggtctcatcgtggcacgatggt 43081861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 18812668 - 18812815
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| || | ||||||||||||| |||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  18812668 tgtgagagttaacttaaaatcaggtttctgaagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 18812767  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18812768 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 18812815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 27826815 - 27826950
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 334  Q
    |||||||||||||| ||  |||||||||||||||||||||||||| ||||||  |||| ||||||||||||||||||||||||||| |||||||||||||    
T  27826815 aatcgtggcacgattgctgggcaacgtggcacgatggaggtttcattttttgaagcaaagcactggaaaaatcgtggcacgatgggatcgcatcgtggca 27826914  T
Q  335 cgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||| ||||||| || |||| |||||||||    
T  27826915 cgatggtgcgctggcagcgaaaaacaaaaacatatt 27826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 27829126 - 27829261
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 334  Q
    |||||||||||||| ||  |||||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||| |||||||||||||    
T  27829126 aatcgtggcacgattgctgggcaacgtggcacgatggaggtttcattttttgaggcaaaacactggaaaaatcgtggcacgatgggatcgcatcgtggca 27829225  T
Q  335 cgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||| ||||||| || |||| |||||||||    
T  27829226 cgatggtgcgctggcagcgaaaaacaaaaacatatt 27829261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 12517532 - 12517397
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| | ||||||||||||||||||||||||| ||||||||||||    
T  12517532 aatcgtggcacgatggcaaggcaacgtggcacgattggaggtttcagtttt-gaggcaatgtactggaaaaatcgtggcacgatgggatcgcatcgtggc 12517434  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||| | ||||||| || |||| |||||||||    
T  12517433 acgatggtgtgctggcagcgaaaaacagaaacatatt 12517397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 18810483 - 18810630
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| | |||||  ||||||||||||||    
T  18810483 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttatttttttaggcaaggcactgga 18810582  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||| | |||||||||||||| |||||||||||||||||||| ||||    
T  18810583 aaaattgcggcacgatggggtcacatcgtggcacgatggtgcgctggc 18810630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 44720617 - 44720785
Alignment:
Q  202 tgtgagatttaacttcaaatcagattta-tgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactg 299  Q
    ||||||| ||||||| ||||||| |||  |||| |||||||||| ||| ||  ||||  |||||||| | ||||||||||||||| | ||||||| ||||    
T  44720617 tgtgagagttaacttaaaatcaggttttctgcagaatcgtggcatgattgctgggcattgtggcacgtttggaggtttcagtttt-gaggcaaggtactg 44720715  T
Q  300 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  44720716 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaa-aacagaaacatatt 44720785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 210 - 370
Target Start/End: Original strand, 14807556 - 14807716
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcg 308  Q
    ||||||| ||||||| ||| |||| |||||||||| |||||   ||||||||| |||||| ||||||||||  ||| | ||||| |||||||||||||||    
T  14807556 ttaacttaaaatcaggtttctgcagaatcgtggcatgatggttgggcaacgtgacacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcg 14807654  T
Q  309 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||| ||||    
T  14807655 tggcacgatggggtcgcatcgtggcacggtggtgcgctggcagcgaaaaacataaacgtatt 14807716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 370
Target Start/End: Original strand, 15067785 - 15067945
Alignment:
Q  210 ttaacttcaaatcagatttatgcat-aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatc 307  Q
    ||||||| ||||||||||| ||||  |||||||||| ||||||  |||||| ||||||||| ||||||||||||||| |  ||||| |||||||||||||    
T  15067785 ttaacttaaaatcagattt-tgcaggaatcgtggcaagatggctgggcaacatggcacgattggaggtttcagtttt-gaagcaagccactggaaaaatc 15067882  T
Q  308 gtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
     || ||||||||| ||||| ||||||||||||||||| ||||||| ||||||| |||| ||||    
T  15067883 atgccacgatgggatcgcaacgtggcacgatggtgcgctggcagcgaataacaaaaacgtatt 15067945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 28252093 - 28251988
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||  ||| | ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  28252093 aatcgtggcacgatggctaggcaacgtggtacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatgggatcgcatcgtggc 28251995  T
Q  334 acgatgg 340  Q
    |||||||    
T  28251994 acgatgg 28251988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 15072506 - 15072674
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcat-aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactg 299  Q
    ||||||| ||||||| ||||||||||  ||||  ||||||| |||||||||  ||||||||| |||||| ||||||||||||||| |  ||||| ||||     
T  15072506 tgtgagagttaacttaaaatcagattc-tgcaggaatcgtgacacgatggctgggcaacgtgacacgattggaggtttcagtttt-gaagcaagccacta 15072603  T
Q  300 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||| ||||||| |||| ||||    
T  15072604 gaaaaatcgtgtcacgatgggatcgcaacgtggcatgatggtgcgctggcagcgaataacagaaacgtatt 15072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 3886412 - 3886322
Alignment:
Q  230 tgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagt-ttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    |||| ||||||| || ||||||  | |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |||||||    
T  3886412 tgcagaatcgtgacatgatggctggacaacgtggcacgatggaggtttcagttttttgaggcaagacactggaaaaatcgtggtacgatgg 3886322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 4423868 - 4423952
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    ||||||||||| || ||  ||||||||||||| || |||||||||||||||  || ||||||||||||||||||||||||||||||    
T  4423868 aatcgtggcacaattgctgggcaacgtggcacaattggaggtttcagttttaagg-caaggcactggaaaaatcgtggcacgatgg 4423952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 28252002 - 28251937
Alignment:
Q  305 atcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||| || |||| |||| ||||    
T  28252002 atcgtggcacgatgggatcgcatcgtggtacgatggtgcgttggcagcgaaaaacagaaacgtatt 28251937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 26068882 - 26068735
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  26068882 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaacgtggcatgatggaggttttagttttttgggcaaggcactgga 26068783  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  26068782 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 26068735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 14507716 - 14507546
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgggg--caaggcactg 299  Q
    ||||||| ||||||| ||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||  |   ||||||||||    
T  14507716 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagtttttttgatacaaggcactg 14507617  T
Q  300 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || |||| || |||| |||||||||    
T  14507616 gaaaaatggtggcacgatggggtcgcatcgtggcacgatggtgcgctgccagcgaaaaacagaaacatatt 14507546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 19227915 - 19227780
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 334  Q
    ||||||||||||||||   |||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19227915 aatcgtggcacgatggttgggcaacgtggcatgatggaggtttcaatttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 19227816  T
Q  335 cgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||| |||| || ||||||| |||||||||    
T  19227815 cgatggtgcgctggcggcgaataacagaaacatatt 19227780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 26066611 - 26066464
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| || | ||||||||||||| ||||||||||||||||||||||||||||| |||| || |||||||||||||||    
T  26066611 tgtgagagttaacttaaaatcaggtttctgtagaatcgtggcacgacggcaaggcaacgtggcacgatggaggttttagttatttgggcaaggcactgga 26066512  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  26066511 aaaatcgtggcacgatggggtctcatcgtggcacaatggtgcgctggc 26066464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 33308685 - 33308832
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  ||||||||||||||||||| ||||||| |||||||||||||||    
T  33308685 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgtggcacgatggaggttttagttttttgggcaaggcactgga 33308784  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33308785 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 33308832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 33310954 - 33311101
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  ||||||||||||||||||| ||||||| |||||||||||||||    
T  33310954 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgtggcacgatggaggttttagttttttgggcaaggcactgga 33311053  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33311054 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 33311101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 8995288 - 8995423
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  8995288 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttttggg-caaggcactggaaaaatcgtggcacgatggggtcacatcgtggc 8995386  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| || |||||||||||| |||| ||||    
T  8995387 acgatggtgcgctgacagcaaataacagaaacgtatt 8995423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 9019735 - 9019870
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  9019735 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttttggg-caaggcactggaaaaatcgtggcacgatggggtcacatcgtggc 9019833  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| || |||||||||||| |||| ||||    
T  9019834 acgatggtgcgctgacagcaaataacagaaacgtatt 9019870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 29755279 - 29755132
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  29755279 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 29755180  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29755179 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 29755132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 210 - 370
Target Start/End: Complemental strand, 11983558 - 11983400
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgt 309  Q
    ||||||| ||||||| ||| |||| |||||||| |||||||   |||||| ||| |||||||||||||||||| | | || ||| |||||||||||||||    
T  11983558 ttaacttaaaatcaggtttctgcagaatcgtggtacgatggttgggcaacatggtacgatggaggtttcagttgt-gaggtaag-cactggaaaaatcgt 11983461  T
Q  310 ggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||    
T  11983460 ggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatt 11983400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 370
Target Start/End: Complemental strand, 4816749 - 4816639
Alignment:
Q  259 cgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaata 357  Q
    ||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |    
T  4816749 cgtggcacgattggaggtttcagtttt-gaggcaaggtactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgtgctggtagcaaa-a 4816652  T
Q  358 acataaacatatt 370  Q
    ||| |||||||||    
T  4816651 acagaaacatatt 4816639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 351
Target Start/End: Complemental strand, 15530628 - 15530512
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||  || |||||||||| || ||||||||||  ||| | ||||| ||||| ||||| |||||| ||||||||| |||||||||||    
T  15530628 aatcgtggcacgatggctgggtaacgtggcacaattggaggtttcaagttt-gaggcaaagcactcgaaaattcgtggtacgatggggccgcatcgtggc 15530530  T
Q  334 acgatggtgcggtggcag 351  Q
    ||||||||| | ||||||    
T  15530529 acgatggtgtgctggcag 15530512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 370
Target Start/End: Complemental strand, 30729281 - 30729199
Alignment:
Q  288 ggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||| |||||||||  ||||| |||||||||||| || ||||||||||| ||||| ||||||| ||||||| |||| ||||    
T  30729281 ggcaagtcactggaaatttcgtgccacgatggggtcacaacgtggcacgatagtgcgctggcagcgaataacagaaacgtatt 30729199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 26084818 - 26084867
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||||||    
T  26084818 cactggaaaaatcgtgccacgattgaatcgcatcgtggcacgatggtgcg 26084867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 1047503 - 1047356
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  1047503 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 1047404  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  1047403 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 1047356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 3878322 - 3878490
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||||||| |||| |||||||||||||||||  |||||||||||||||| ||||||||||  ||| | ||||| |||||||    
T  3878322 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactgg 3878420  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||| ||||    
T  3878421 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtacgctggcagcgaataacagaaacgtatt 3878490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 2935070 - 2935217
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  2935070 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 2935169  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2935170 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 2935217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 9027687 - 9027540
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  9027687 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 9027588  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9027587 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 9027540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 22136878 - 22137025
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  22136878 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 22136977  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22136978 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 22137025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 40551905 - 40552052
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  40551905 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 40552004  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40552005 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 40552052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 22107867 - 22108014
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || ||||||||| |||||| ||||||| |||||||||||||||    
T  22107867 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatgcaggttttagttttttgggcaaggcactgga 22107966  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22107967 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 22108014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 40549627 - 40549774
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || ||||||||| |||||| ||||||| |||||||||||||||    
T  40549627 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatgcaggttttagttttttgggcaaggcactgga 40549726  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40549727 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 40549774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 201 - 370
Target Start/End: Complemental strand, 27306768 - 27306600
Alignment:
Q  201 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactg 299  Q
    |||||||| ||||||| |||| || ||| |||| |||||||||||||||||  | |||||||||||||| ||||||||||||||| | |||||| || ||    
T  27306768 atgtgagagttaacttaaaataaggttt-tgcaaaatcgtggcacgatggctggacaacgtggcacgattggaggtttcagtttt-gaggcaagtcattg 27306671  T
Q  300 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||| |||| ||||    
T  27306670 gaaaaatcgtggcacgatggggtcgcttcgtggcacgatggtgcgctagcagcgaataacagaaacgtatt 27306600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 202 - 319
Target Start/End: Complemental strand, 40837261 - 40837144
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||||   | ||||||||||||||||||||||||||||||  ||||||||||||||    
T  40837261 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggtcggacaacgtggcacgatggaggtttcagttttttaggcaaggcactgga 40837162  T
Q  302 aaaatcgtggcacgatgg 319  Q
    ||||||||||||||||||    
T  40837161 aaaatcgtggcacgatgg 40837144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 35412 - 35547
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||  ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  35412 aatcgtggcacgattgctaggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatggggtcgcatcgtggc 35510  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
     |||| ||||| |||||||||||| || |||| ||||    
T  35511 ccgatcgtgcgctggcagcaaatagcagaaacgtatt 35547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 44347 - 44482
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    ||||||||||||||  |  ||||| |||||||||| ||||||||||  ||| |  |||| |||||||||||||| |||||||||||||||||||||||||    
T  44347 aatcgtggcacgatttctgggcaatgtggcacgattggaggtttcaagttt-gacgcaaagcactggaaaaatcatggcacgatggggtcgcatcgtggc 44445  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| |||||||||||||||||||||||||    
T  44446 acgatggtgcgctggcagcaaataacataaacatatt 44482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 239 - 370
Target Start/End: Original strand, 25542317 - 25542448
Alignment:
Q  239 gtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacga 337  Q
    |||||||||| ||  |||||||||||||||| |||||||||||||||  || ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  25542317 gtggcacgattgctgggcaacgtggcacgattggaggtttcagttttaagg-caaggcacttgaaaaatcgtggcacgatgggatcgcatcgtggcacga 25542415  T
Q  338 tggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||| ||||||| || |||| |||||||||    
T  25542416 tggtgcgctggcagcgaaaaacagaaacatatt 25542448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 26804345 - 26804462
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttggggcaaggcactgg 300  Q
    ||||||| ||||||| ||||||| ||| | || |||||||||||||||||  |||||||||| |||| |||||||||||| ||||| ||||||||| |||    
T  26804345 tgtgagagttaacttaaaatcaggtttctacagaatcgtggcacgatggctgggcaacgtggtacgattggaggtttcag-ttttgaggcaaggcagtgg 26804443  T
Q  301 aaaaatcgtggcacgatgg 319  Q
    |||||||||||||||||||    
T  26804444 aaaaatcgtggcacgatgg 26804462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 18567396 - 18567531
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| ||  ||||| |||||||||| ||||||||||||||| | |||||| |||||||    |||||||||||||||||| || | ||||    
T  18567396 aatcgtggcacgatagctgggcaaagtggcacgattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcacgatggggtcacaacttggc 18567494  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||| | ||||||| |||| ||||    
T  18567495 acgatggtgcgctggcaacgaataacagaaacgtatt 18567531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 31435553 - 31435418
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| ||  ||||| |||||||||| ||||||||||||||| | |||||| |||||||    |||||||||||||||||| || | ||||    
T  31435553 aatcgtggcacgatagctgggcaaagtggcacgattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcacgatggggtcacaacttggc 31435455  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||| | ||||||| |||| ||||    
T  31435454 acgatggtgcgctggcaacgaataacagaaacgtatt 31435418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 1049780 - 1049699
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacga 316  Q
    |||||||||||||| ||  |||||||||||||||| ||||||||||||||| |  |||||| |||||||||||||||||||||    
T  1049780 aatcgtggcacgattgctgggcaacgtggcacgattggaggtttcagtttt-gaagcaaggtactggaaaaatcgtggcacga 1049699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 26804448 - 26804492
Alignment:
Q  326 atcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||    
T  26804448 atcgtggcacgatggtgcgctggcagcaaataacagaaacgtatt 26804492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 40946167 - 40946216
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||| |||||| || ||| |||||| ||||||||||||    
T  40946167 cactggaaaaatcgtgtcacgattggatcgaatcgtgccacgatggtgcg 40946216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 42006404 - 42006484
Alignment:
Q  289 gcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||| ||||| |||||||||||||||||||  ||| | |||||||||||||| | || | || ||||||||||||| ||||    
T  42006404 gcaagtcactgaaaaaatcgtggcacgatggaatcgtaacgtggcacgatggtac-gttgaaggaaataacataaacgtatt 42006484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 34477632 - 34477485
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||  ||| |||| |||||||||||||||||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  34477632 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 34477533  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34477532 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 34477485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 38881878 - 38882013
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 334  Q
    |||||||||||||| ||  |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38881878 aatcgtggcacgattgctgggcaacgtggcacgatggaggttttagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 38881977  T
Q  335 cgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||| |||| || ||||||| |||| ||||    
T  38881978 cgatggtgcgctggcggcgaataacagaaacgtatt 38882013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 31544798 - 31544966
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||| ||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  31544798 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 31544897  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||| ||||| | |||||||||||| |||| |  || |||| |||||||||    
T  31544898 aaaatcgtggcacgatggggtctcatcgagacacgatggtgcgctggcggataaaaacagaaacatatt 31544966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 10749505 - 10749652
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  10749505 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 10749604  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10749605 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 10749652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 2174680 - 2174797
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  2174680 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactgga 2174779  T
Q  302 aaaatcgtggcacgatgg 319  Q
    ||||||||||||||||||    
T  2174780 aaaatcgtggcacgatgg 2174797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 31542442 - 31542610
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||| |||||| ||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  31542442 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtgacacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 31542541  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||| ||||| | |||||||||||| |||| |  || |||| |||||||||    
T  31542542 aaaatcgtggcacgatggggtctcatcgagacacgatggtgcgctggcggataaaaacagaaacatatt 31542610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 10756960 - 10757107
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||| |||||| |||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  10756960 tgtgagagttaacttaaaatcaggtttctgcacaatcgtagcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 10757059  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10757060 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 10757107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 15355065 - 15354918
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  15355065 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 15354966  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15354965 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 15354918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 15357341 - 15357194
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  15357341 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 15357242  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15357241 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 15357194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 4236378 - 4236519
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcg 308  Q
    ||||||| ||||||||||| |||| ||| |||||||||||||  |||||||||||||||| |||||||||||||||  || |||||||||||||||||||    
T  4236378 ttaacttaaaatcagatttctgcagaattgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttaagg-caaggcactggaaaaatcg 4236476  T
Q  309 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcag 351  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||    
T  4236477 tggcacaatgggatcgcatcgtggcacgatggtgcgctggcag 4236519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 202 - 319
Target Start/End: Complemental strand, 34479972 - 34479855
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  34479972 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 34479873  T
Q  302 aaaatcgtggcacgatgg 319  Q
    ||||||||||||||||||    
T  34479872 aaaatcgtggcacgatgg 34479855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 39797849 - 39797966
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| ||||||||||||||||||||||  |||||||||||| |||||||||||||||||||| |||||||||| |||    
T  39797849 tgtgagagttaacttaaaatcaggtttctgcataatcgtggcacgatggctgggcaacgtggcatgatggaggtttcagtttttgaggcaaggcaccgga 39797948  T
Q  302 aaaatcgtggcacgatgg 319  Q
    |||||| |||||||||||    
T  39797949 aaaatcatggcacgatgg 39797966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 16775930 - 16776065
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||  ||| | ||||| |||||| |||||||||||||||||||||||||||||||||    
T  16775930 aatcgtggcacgatggcaaggcaacgtgacacgattggaggtttcaagttt-gaggcaaagcactgaaaaaatcgtggcacgatggggtcgcatcgtggc 16776028  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||| ||||| | || |||| |||||||||    
T  16776029 acgatggtgcgctggcatcgaaaaacagaaacatatt 16776065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 349
Target Start/End: Original strand, 23664833 - 23664981
Alignment:
Q  201 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgg 300  Q
    |||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||| ||| | ||||| ||| ||||||||||    
T  23664833 atgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgg 23664932  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23664933 aaaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggc 23664981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 349
Target Start/End: Complemental strand, 23793754 - 23793606
Alignment:
Q  201 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgg 300  Q
    |||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||| ||| | ||||| ||| ||||||||||    
T  23793754 atgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgg 23793655  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23793654 aaaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggc 23793606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 23667109 - 23667256
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||| ||| | ||||| ||| |||||||||||    
T  23667109 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgga 23667208  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23667209 aaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggc 23667256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 25921993 - 25921874
Alignment:
Q  201 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagt-ttttggggcaaggcactg 299  Q
    |||||||| ||||||| ||||||| ||| |||| ||||||||||||||||   | |||||||||||||||||||||||||| ||||| ||||||||||||    
T  25921993 atgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggttggacaacgtggcacgatggaggtttcagttttttgaggcaaggcactg 25921894  T
Q  300 gaaaaatcgtggcacgatgg 319  Q
    ||||||||||||||||||||    
T  25921893 gaaaaatcgtggcacgatgg 25921874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 259 - 349
Target Start/End: Complemental strand, 31179897 - 31179807
Alignment:
Q  259 cgtggcacgatggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  31179897 cgtggcacgatggaggttttagttttttgggcaagacactggaaaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 31179807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 21684909 - 21684832
Alignment:
Q  293 ggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||    
T  21684909 ggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatt 21684832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 319
Target Start/End: Complemental strand, 38960604 - 38960487
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||   | |||||||||||||||| ||||||| |||||||||||||||    
T  38960604 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggctttgcggcacgatggaggttttagttttttgggcaaggcactgga 38960505  T
Q  302 aaaatcgtggcacgatgg 319  Q
    ||||||||||||||||||    
T  38960504 aaaatcgtggcacgatgg 38960487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 659746 - 659829
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  659746 aatcgtggcacgatggctaggcaacgtggcacgattggaggtttcag--tttgaggcaagtcactggaaaaatcgtggcacgatgg 659829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 337
Target Start/End: Complemental strand, 659929 - 659850
Alignment:
Q  257 aacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacga 337  Q
    ||||||||||||| ||||||||||||||  | |||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  659929 aacgtggcacgattggaggtttcagttt--gaggcaagtcactggaaaaatcgtggcacgatgaggtcgcattgtggcacga 659850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 21947803 - 21947935
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||||| | || ||| |||||||     |||||||||||||| | ||| ||||||    
T  21947803 aatcgtggcacgatggctaggcaacgtgacacgattggaggtttcagtttt-gaggtaagtcactggactttacgtggcacgatgggattgcaacgtggc 21947901  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||   |||||||| ||||||| |||||||||    
T  21947902 acgatggt---gtggcagcgaataacagaaacatatt 21947935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 18186589 - 18186504
Alignment:
Q  200 aatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttt 284  Q
    ||||||||| ||||||| ||||||  ||| |||| |||||||| ||||||||  ||||||||||||||| ||||||||||||||||    
T  18186589 aatgtgagagttaacttaaaatcaagtttctgcagaatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagtttt 18186504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 319
Target Start/End: Complemental strand, 31466496 - 31466379
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcat-aatcgtggcacgatggcaaggcaacgtggcacgatg-gaggtttcagtttttggggcaaggcactg 299  Q
    ||||||| ||||||| ||||||| ||| ||||  |||||||||||||| | | ||||||||||||||||| || ||||||||| | | |||||| |||||    
T  31466496 tgtgagagttaacttaaaatcaggttt-tgcaggaatcgtggcacgattgaagggcaacgtggcacgatgagatgtttcagttat-gaggcaagtcactg 31466399  T
Q  300 gaaaaatcgtggcacgatgg 319  Q
    |||||||| |||||||||||    
T  31466398 gaaaaatcttggcacgatgg 31466379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 2818813 - 2818729
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatgg 319  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||||| ||||| |||||| |||||||    ||||||||||||||    
T  2818813 aatcgtggcacgatggctaggcaacatggcacgattggaggtttcag-ttttgaggcaagtcactggatttttcgtggcacgatgg 2818729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 21684969 - 21684905
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcac 266  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||    
T  21684969 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcac 21684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 20504419 - 20504316
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||| || ||||| |||||| || ||||    ||||||||||||||| | ||| ||||||    
T  20504419 aatcgtggcacgatagctgggcaacgtggcacgattggaggttttag-ttttgaggcaagtcaatggatttttcgtggcacgatgggattgcaacgtggc 20504321  T
Q  334 acgat 338  Q
    |||||    
T  20504320 acgat 20504316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 20507968 - 20507833
Alignment:
Q  235 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 333  Q
    |||||||||||||| |   |||||||| ||||||| |||||||| |||||| | |||||| || ||||    ||||||||||||||| | ||| | ||||    
T  20507968 aatcgtggcacgatagttgggcaacgtagcacgattggaggttttagtttt-gaggcaagtcattggatttttcgtggcacgatgggattgcaacatggc 20507870  T
Q  334 acgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||| |||||| | ||||| ||||||| |||||||||    
T  20507869 acgaaggtgcgctagcagcgaataacagaaacatatt 20507833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 39854317 - 39854366
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||| |||| | |  |||||||||||||||||||||||    
T  39854317 cactggaaaaatcgtgtcacggttgaatcgcatcgtggcacgatggtgcg 39854366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 42238047 - 42238096
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 344  Q
    |||||||||||||||| |||||||   ||||| |||||||||||||||||    
T  42238047 cactggaaaaatcgtgccacgatgaaatcgcaacgtggcacgatggtgcg 42238096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 1240171 - 1240219
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgc 343  Q
    |||||||||||||||| |||||| || ||| |||||| |||||||||||    
T  1240171 cactggaaaaatcgtgccacgattggatcgaatcgtgccacgatggtgc 1240219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 4409890 - 4409946
Alignment:
Q  295 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcag 351  Q
    |||||||||||||||| ||| || || ||| |||||| |||||||||||| ||||||    
T  4409890 cactggaaaaatcgtgccacaattggatcgaatcgtgccacgatggtgcgatggcag 4409946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 31179933 - 31179885
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatgg 250  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||||    
T  31179933 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatgg 31179885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 39797956 - 39797996
Alignment:
Q  330 tggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||| ||||||| ||||||| |||||||||    
T  39797956 tggcacgatggtgcgctggcagcgaataacagaaacatatt 39797996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 21915 - 22062
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  21915 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 22014  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22015 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 22062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 24190 - 24337
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  24190 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 24289  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24290 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 24337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 243 - 370
Target Start/End: Original strand, 2670 - 2797
Alignment:
Q  243 cacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggt 341  Q
    |||||| || ||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  2670 cacgattgctaggcaacgtggcacgattggaggtttcagtttt-gaggcaaggtactggaaaaatcgtggcacgatgggatcgcatcgtggcacgatggt 2768  T
Q  342 gcggtggcagcaaataacataaacatatt 370  Q
    ||| ||||||| |||||||||||| ||||    
T  2769 gcgctggcagcgaataacataaacgtatt 2797  T

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Target: scaffold0025 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 210 - 370
Target Start/End: Complemental strand, 69825 - 69665
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttggggcaaggcactggaaaaatcg 308  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||  ||| | ||||| |||||||||||||||    
T  69825 ttaacttaaaatcagatttctgcagaatcgtggcacgatggctaggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcg 69727  T
Q  309 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    | |||| ||||| ||||||||| ||||||||||| | ||||||| || |||| |||||||||    
T  69726 tagcacaatgggatcgcatcgttgcacgatggtgtgctggcagcgaaaaacagaaacatatt 69665  T

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Target: scaffold0025; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 319
Target Start/End: Complemental strand, 73536 - 73427
Alignment:
Q  210 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttggggcaaggcactggaaaaatcg 308  Q
    ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||   |||| ||||| ||||||||||||| |    
T  73536 ttaacttaaaatcagatttatgcagaatcgtggcacgatggctaggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactggaaaaattg 73438  T
Q  309 tggcacgatgg 319  Q
    |||||||||||    
T  73437 tggcacgatgg 73427  T

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Target: scaffold0472 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 5927 - 6074
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttggggcaaggcactgga 301  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  5927 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttaggcaaggcactgga 6026  T
Q  302 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 349  Q
    |||||||||||| ||||||||| |||| ||||||||||||||| ||||    
T  6027 aaaatcgtggcatgatggggtctcatcatggcacgatggtgcgctggc 6074  T

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Target: scaffold0068 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 29001 - 29078
Alignment:
Q  293 ggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||    
T  29001 ggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatt 29078  T

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Target: scaffold0068; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 28941 - 29005
Alignment:
Q  202 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcac 266  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||    
T  28941 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcac 29005  T

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Target: scaffold0131 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 370
Target Start/End: Original strand, 14768 - 14936
Alignment:
Q  203 gtgagatttaacttcaaatcagatttatgcat-aatcgtggcacgatggcaaggcaacgtggcacgatgg-aggtttcagtttttggggcaaggcactgg 300  Q
    |||||| ||||||| |||||||  || ||||  |||||||||||||| | | |||||||||| ||||||| | ||||||||| | | |||||| ||||||    
T  14768 gtgagagttaacttaaaatcaggattctgcaggaatcgtggcacgattgaagggcaacgtggaacgatgggaagtttcagttat-gaggcaagtcactgg 14866  T
Q  301 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    |||  ||||||||||||||| || || |||| |||||||||||| ||||||| ||||||| |||||||||    
T  14867 aaatttcgtggcacgatgggatcacaacgtgacacgatggtgcgctggcagcgaataacagaaacatatt 14936  T

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Target: scaffold0339 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 3872 - 3914
Alignment:
Q  328 cgtggcacgatggtgcggtggcagcaaataacataaacatatt 370  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||    
T  3872 cgtggcacgatggtgcgatggcagcgaataacataaacgtatt 3914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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