View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_44 (Length: 376)
Name: NF8606A_low_44
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 154 - 367
Target Start/End: Complemental strand, 28095108 - 28094895
Alignment:
| Q |
154 |
gcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgactgt |
253 |
Q |
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| T |
28095108 |
gcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgt |
28095009 |
T |
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| Q |
254 |
ttggcctggaacacatgattctgcaacggacaaaatcggcataccaggaatctctcgtcctttcgcacaatgccaaaccatatccatctataatcagctt |
353 |
Q |
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| T |
28095008 |
ttggcctggaacacatgattctgcaacggacaaaatcggcataccaggaatctctcgtcctttcgcacaatgccaaaccttatccatctataatcagctt |
28094909 |
T |
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| Q |
354 |
gtaagaggaacacg |
367 |
Q |
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| T |
28094908 |
gtaagaggaacacg |
28094895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 28095256 - 28095171
Alignment:
| Q |
6 |
aagaactaggaattcttattattcctcttcttctccttgtccccannnnnnncattgatgttaaagaaaatgggttctcaggtgtc |
91 |
Q |
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| T |
28095256 |
aagaactaggaattcttattcttcctcttcttctccttgtccccatttttttcattgatgttaaagaaaatgggttctcaggtgtc |
28095171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 26155653 - 26155707
Alignment:
| Q |
158 |
aggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatg |
212 |
Q |
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| T |
26155653 |
aggagaagactaccctggttctgaatatcatccatcagatagaaaaaactggatg |
26155707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 26168951 - 26169005
Alignment:
| Q |
158 |
aggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatg |
212 |
Q |
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||||||| |||||||||||| ||| || || |||||||| ||||||||||||||| |
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| T |
26168951 |
aggagaagactaccctggttctgaatatcatccatcagatagaaaaaactggatg |
26169005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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