View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_48 (Length: 373)

Name: NF8606A_low_48
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_48
NF8606A_low_48
[»] chr6 (23 HSPs)
chr6 (6-368)||(28097221-28097583)
chr6 (18-266)||(29827130-29827378)
chr6 (108-359)||(28326529-28326780)
chr6 (108-359)||(28504165-28504416)
chr6 (74-343)||(28140602-28140871)
chr6 (105-342)||(28186462-28186699)
chr6 (27-359)||(26950794-26951126)
chr6 (105-368)||(28296617-28296880)
chr6 (105-368)||(28515193-28515456)
chr6 (108-218)||(26636838-26636948)
chr6 (108-218)||(26742804-26742914)
chr6 (234-368)||(28235607-28235741)
chr6 (124-241)||(25075036-25075153)
chr6 (21-221)||(29842785-29842985)
chr6 (108-199)||(26849923-26850014)
chr6 (108-218)||(26960317-26960427)
chr6 (234-368)||(28227994-28228128)
chr6 (287-349)||(2185887-2185949)
chr6 (21-151)||(27697379-27697509)
chr6 (122-219)||(26812719-26812816)
chr6 (125-198)||(29476962-29477035)
chr6 (122-218)||(27664108-27664204)
chr6 (105-189)||(28244016-28244100)
[»] chr2 (2 HSPs)
chr2 (21-368)||(3280701-3281048)
chr2 (122-359)||(17992109-17992346)
[»] scaffold0019 (1 HSPs)
scaffold0019 (6-368)||(57072-57434)
[»] chr5 (1 HSPs)
chr5 (6-179)||(16692098-16692271)
[»] chr4 (1 HSPs)
chr4 (50-368)||(5089772-5090090)
[»] chr1 (1 HSPs)
chr1 (122-265)||(26137033-26137176)
[»] scaffold0038 (3 HSPs)
scaffold0038 (234-368)||(35769-35903)
scaffold0038 (234-368)||(28492-28626)
scaffold0038 (105-189)||(44178-44262)
[»] chr8 (1 HSPs)
chr8 (6-179)||(31906285-31906458)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 368
Target Start/End: Original strand, 28097221 - 28097583
Alignment:
Q  6 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097221 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 28097320  T
Q  106 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097321 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactc 28097420  T
Q  206 ataacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097421 ataacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatc 28097520  T
Q  306 ccatgacttgctaacaagtttttatctcgagtggtaacaatcactctactgccaacaccaaac 368  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28097521 ccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaac 28097583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 29827378 - 29827130
Alignment:
Q  18 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 117  Q
    |||||||||||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| |||||||||||||    
T  29827378 tcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttcta 29827279  T
Q  118 tatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatc 217  Q
    ||| ||||||| ||||   || ||||| || ||| ||  |||| |||||||||| |||||||  ||||||||||| ||||||    ||||| ||||||||    
T  29827278 tattctttccaaacaacgcgggacctactaattctaaaaccaacggaaggccagaagcataagctattgcacggtctaaaatgtcatcatatcttgaatc 29827179  T
Q  218 aacttgtttagctttaaaagccttccacctaagcaattcaagggcttct 266  Q
    | ||    || |||||||||| ||||||||||  |||||||||| ||||    
T  29827178 acctatactatctttaaaagctttccacctaaataattcaagggattct 29827130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 359
Target Start/End: Complemental strand, 28326780 - 28326529
Alignment:
Q  108 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcat 207  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| ||||||| ||| ||||| || |||||| |  |||     
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcacagtataaaatgccgtcaa 28326681  T
Q  208 aacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatccc 307  Q
    || ||||||| ||||  |||  ||| ||||  |||||||| | ||||||||| |||||| ||||  ||||||   |  ||||||||| |  |||||||||    
T  28326680 aatttgaatcgactttgttatttttgaaagtattccacctcaacaattcaagagcttctctcttaattaacttaggaatttcatatgctctttcaatccc 28326581  T
Q  308 atgacttgctaacaagtttttatctcgagtggtaacaatcactctactgcca 359  Q
     ||||||  || ||| | ||| |||||||||||||| |||||||||||||||    
T  28326580 gtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgcca 28326529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 359
Target Start/End: Complemental strand, 28504416 - 28504165
Alignment:
Q  108 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcat 207  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| ||||||| ||| ||||| || |||||| |  |||     
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcacagtataaaatgccgtcaa 28504317  T
Q  208 aacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatccc 307  Q
    || ||||||| ||||  |||  ||| ||||  |||||||| | ||||||||| |||||| ||||  ||||||   |  ||||||||| |  |||||||||    
T  28504316 aatttgaatcgactttgttatttttgaaagtattccacctcaacaattcaagagcttctctcttaattaacttaggaatttcatatgctctttcaatccc 28504217  T
Q  308 atgacttgctaacaagtttttatctcgagtggtaacaatcactctactgcca 359  Q
     ||||||  || ||| | ||| |||||||||||||| |||||||||||||||    
T  28504216 gtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgcca 28504165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 343
Target Start/End: Complemental strand, 28140871 - 28140602
Alignment:
Q  74 aggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagca 173  Q
    |||||| |||||||| ||||| ||   ||| ||||| || ||| ||||||||||| ||||| | ||||| | || ||| || ||||||||||||||||      
T  28140871 aggaatcctttcataccgatctaatgtagatttccactcatctttatgctttccaaacaagctagaaccaactacttctaaagccaatggaaggccagag 28140772  T
Q  174 gcataatttattgcacggtttaaaatacactcataacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgt 273  Q
    |||||| | | |||||||||||||||   ||||||||||||||||||||  |||  |||||| ||||||||  | ||||| || || ||||||| ||| |    
T  28140771 gcataagtaactgcacggtttaaaatgtgctcataacttgaatcaactttattatttttaaatgccttccatttcagcaactctagagcttcttccttat 28140672  T
Q  274 ttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaacaagtttttatctcgagtggtaac 343  Q
    ||||| | | |  |||||| |||   ||||||||||||| ||||| ||| | ||| |||||||| |||||    
T  28140671 ttaacccatctagttcataagttctctcaatcccatgacatgctagcaaatgtttgtctcgagttgtaac 28140602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 342
Target Start/End: Complemental strand, 28186699 - 28186462
Alignment:
Q  105 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacact 204  Q
    ||||||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| ||||||| ||| |||| ||| |||||  |  |    
T  28186699 ttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcatggtgtaaaacgctgt 28186600  T
Q  205 cataacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaat 304  Q
    |  || ||| ||||||||  |||  ||| |||||||||||| | | ||||||||| ||||||||||  |||||||  |||  || ||||| |  ||||||    
T  28186599 cgaaatttgtatcaactttgttattttttaaagccttccacgtcaacaattcaagagcttctttctcatttaacttatgtaatttatatgctctttcaat 28186500  T
Q  305 cccatgacttgctaacaagtttttatctcgagtggtaa 342  Q
    |||||||   |||| ||| | ||| |||||||||||||    
T  28186499 cccatgatgagctagcaattgtttgtctcgagtggtaa 28186462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 359
Target Start/End: Complemental strand, 26951126 - 26950794
Alignment:
Q  27 tccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttc 126  Q
    |||||||||||||| || ||   |||||| ||||| || ||||||   ||||||||||||||   ||| || ||||| |  |||||| |||||  |||||    
T  26951126 tccaaagcatcaaagcttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaataaagactcacattctgctatagtctttc 26951027  T
Q  127 catacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaacttgttt 226  Q
    || ||||||| ||||| | || ||| || || |||||||||||||||||||| || | |||||||||||||||||  ||||| |||||||||  ||  ||    
T  26951026 caaacaagttagaacccactacttctaaagctaatggaaggccagcagcatatttaactgcacggtttaaaatactatcataccttgaatcatttttgtt 26950927  T
Q  227 agctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaacaagttt 326  Q
    |  |||||||||| ||   || | ||||||||| |||| || ||| |||||  | | || ||||||| ||  || ||||||||||| || |||||| | |    
T  26950926 acttttaaaagccatcattcttaacaattcaagagcttgttccttatttaaaccatctgcttcatatatttttttaatcccatgacatgataacaaatgt 26950827  T
Q  327 ttatctcgagtggtaacaatcactctactgcca 359  Q
    || || ||||||||||  || ||||| ||||||    
T  26950826 ttgtcacgagtggtaatgatgactctgctgcca 26950794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 368
Target Start/End: Original strand, 28296617 - 28296880
Alignment:
Q  105 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacact 204  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| ||||||| |||  ||  ||| ||||||    |    
T  28296617 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttacagcctggtgtaaaatgtcgt 28296716  T
Q  205 cataacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaat 304  Q
    || || ||| ||| ||||  |||  ||| ||||| ||||| || | ||||||||| |||||||| |  |||||||  ||| ||||||||| |  ||||||    
T  28296717 caaaatttgtatcgactttgttatttttgaaagcattccatctcaacaattcaagagcttctttgtcatttaacttatgtatttcatatgctctttcaat 28296816  T
Q  305 cccatgacttgctaacaagtttttatctcgagtggtaacaatcactctactgccaacaccaaac 368  Q
    ||||||||   ||| ||| ||||| ||| |||||||||  |||||| |||| |||| |||||||    
T  28296817 cccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaac 28296880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 28515456 - 28515193
Alignment:
Q  105 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacact 204  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| ||||||| |||  ||  ||| ||||||    |    
T  28515456 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttacagcctggtgtaaaatgtcgt 28515357  T
Q  205 cataacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaat 304  Q
    || || ||| ||| ||||  |||  ||| ||||| ||||| || | ||||||||| |||||||| |  |||||||  ||| ||||||||| |  ||||||    
T  28515356 caaaatttgtatcgactttgttatttttgaaagcattccatctcaacaattcaagagcttctttgtcatttaacttatgtatttcatatgctctttcaat 28515257  T
Q  305 cccatgacttgctaacaagtttttatctcgagtggtaacaatcactctactgccaacaccaaac 368  Q
    ||||||||   ||| ||| ||||| ||| |||||||||  |||||| |||| |||| |||||||    
T  28515256 cccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaac 28515193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 26636948 - 26636838
Alignment:
Q  108 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcat 207  Q
    |||||| |||||  ||||||| ||||||||||||| | || ||| || || ||||||||||||| |||||| || | |||||||||||||||  | ||||    
T  26636948 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatgtaatcat 26636849  T
Q  208 aacttgaatca 218  Q
    | |||||||||    
T  26636848 agcttgaatca 26636838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 26742914 - 26742804
Alignment:
Q  108 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcat 207  Q
    |||||| |||||  ||||||| ||||||||||||| | || ||| || || ||||||||||||| |||||| || | |||||||||||||||  | ||||    
T  26742914 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatgtaatcat 26742815  T
Q  208 aacttgaatca 218  Q
    | |||||||||    
T  26742814 agcttgaatca 26742804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 28235741 - 28235607
Alignment:
Q  234 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaacaagtttttatctc 333  Q
    |||||||||||||| | ||||||||| ||||| ||||  |||||||  | | |||| || |||  |||||||||||||||||||| ||| | ||| ||||    
T  28235741 aaagccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctc 28235642  T
Q  334 gagtggtaacaatcactctactgccaacaccaaac 368  Q
    |||||||||  |||||| |||| |||  |||||||    
T  28235641 gagtggtaatgatcactttacttccaggaccaaac 28235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 25075153 - 25075036
Alignment:
Q  124 ttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaacttg 223  Q
    ||||| ||||||||||||| |  | ||| || || ||||||||||||| |||||| || |||||||||||||||||  | ||||| |||||||||  ||     
T  25075153 ttccaaacaagttggaacccacaacttctaaagctaatggaaggccagaagcatatttaattgcacggtttaaaatgtaatcatagcttgaatcattttt 25075054  T
Q  224 tttagctttaaaagcctt 241  Q
    ||||  ||||||||||||    
T  25075053 tttacttttaaaagcctt 25075036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 29842785 - 29842985
Alignment:
Q  21 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 120  Q
    |||||||||||||||||||| || |    |||||| || || ||||||| | ||||||| |||||||| | ||| ||   ||| ||||||||||||||||    
T  29842785 tcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaatcctttcatacctatctaatgtagatttccattcttctatat 29842884  T
Q  121 gctttccatacaa-gttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaa 219  Q
     ||||||| |||| | |||| |||| || ||| ||  |||| |||||||||| |||||||  ||||||||||| ||||||    ||||| ||||||||||    
T  29842885 tctttccaaacaaagctgga-cctactaattctaaaaccaacggaaggccagaagcataagctattgcacggtctaaaatgtcatcatagcttgaatcaa 29842983  T
Q  220 ct 221  Q
    ||    
T  29842984 ct 29842985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 26850014 - 26849923
Alignment:
Q  108 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaat 199  Q
    ||||||||||||  ||||||| ||||||||||||| | || ||| || || ||||||||||||| |||||| || | |||||| ||||||||    
T  26850014 cattcttctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacgatttaaaat 26849923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 26960427 - 26960317
Alignment:
Q  108 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcat 207  Q
    |||||| |||||  ||| ||| ||||||||||||| | || ||| || || ||||||||||||| |||||| || | |||||||||||||||  | ||||    
T  26960427 cattctgctatactcttgccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatgtaatcat 26960328  T
Q  208 aacttgaatca 218  Q
    | |||||||||    
T  26960327 agcttgaatca 26960317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 28228128 - 28227994
Alignment:
Q  234 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaacaagtttttatctc 333  Q
    ||||| |||||||| | ||||||||| ||||| ||||  |||||||  | | ||||||||| |  |||||||||||||||||||| ||| | ||| | ||    
T  28228128 aaagcgttccacctcatcaattcaagagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgacttgctagcaattgtttgtttc 28228029  T
Q  334 gagtggtaacaatcactctactgccaacaccaaac 368  Q
    |||||||||  |||||| |||| |||  |||||||    
T  28228028 gagtggtaatgatcactttacttccaggaccaaac 28227994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 2185949 - 2185887
Alignment:
Q  287 ttcatatgttacttcaatcccatgacttgctaacaagtttttatctcgagtggtaacaatcac 349  Q
    ||||||||||  ||||| ||||| |||||||||||| | ||||||||| |||||||| |||||    
T  2185949 ttcatatgttttttcaaccccataacttgctaacaaatgtttatctcgggtggtaacgatcac 2185887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 27697379 - 27697509
Alignment:
Q  21 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 120  Q
    ||||| |||||||||||| | ||||| | |||||| ||||| ||||||| | | ||||| || ||||| | ||| || | | | |||||||||||||| |    
T  27697379 tcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatatatacttccattcttctatgt 27697478  T
Q  121 gctttccatacaagttggaacctaatatttc 151  Q
     ||||||| ||||||| ||||| | ||||||    
T  27697479 tctttccaaacaagttagaacccactatttc 27697509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 26812816 - 26812719
Alignment:
Q  122 ctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaa 219  Q
    ||||||| ||||||||||||| | || ||| |  || ||||||||||||| || ||| |||| ||| || ||||||||  | ||||||||||||||||    
T  26812816 ctttccaaacaagttggaacccactacttctatagctaatggaaggccagaagtatattttactgcgcgatttaaaatgtaatcataacttgaatcaa 26812719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 29476962 - 29477035
Alignment:
Q  125 tccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaa 198  Q
    |||| ||||| | ||||||| || |||||||||||||||||| || | ||||||| ||| ||| ||||||||||    
T  29476962 tccaaacaagcttgaacctattacttccaaggccaatggaagcccggaagcataagttactgctcggtttaaaa 29477035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 27664108 - 27664204
Alignment:
Q  122 ctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatca 218  Q
    ||||||| ||||||||||||| | || ||  || || ||||||||||||| |||||| |  | |||||||||||||||| | ||||| || ||||||    
T  27664108 ctttccaaacaagttggaacccactacttttaaagctaatggaaggccagaagcatattcaactgcacggtttaaaatataatcatagctggaatca 27664204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 28244100 - 28244016
Alignment:
Q  105 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcac 189  Q
    ||||||||| ||||||  |||||| | ||||| ||||| | || ||| || |||||||||||||||| ||||||| ||| |||||    
T  28244100 ttccattctcctatattatttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 28244016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 3281048 - 3280701
Alignment:
Q  21 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 120  Q
    ||||||||||||||||||||||||||   |||||| || |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  3281048 tcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaattccactcttttatat 3280949  T
Q  121 gctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaac 220  Q
     ||||||| |||||||||||||||||| ||| || |||||||||||||||| ||||||||||| ||| ||||||| ||    |||||||||||||| |||    
T  3280948 tctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataatttactgcgcggtttagaacgtgctcataacttgaattaac 3280849  T
Q  221 ttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaac 320  Q
    ||| |||  |||||||||||||||  ||||||||||||| ||||||| ||| |||||||| | | |||||||||||| ||||||||||||||||| ||||    
T  3280848 ttgcttacttttaaaagccttccatgtaagcaattcaagtgcttcttccttatttaactcatctatttcatatgttagttcaatcccatgacttgataac 3280749  T
Q  321 aagtttttatctcgagtggtaacaatcactctactgccaacaccaaac 368  Q
    |||| ||| |||||||||||||  ||||| ||||| ||||||| ||||    
T  3280748 aagtgtttgtctcgagtggtaatgatcaccctactaccaacactaaac 3280701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 359
Target Start/End: Original strand, 17992109 - 17992346
Alignment:
Q  122 ctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaact 221  Q
    ||||||| ||||||||||||| | || ||| || || ||||| |||||||||||||| || | | |||||||||||||| | | |||||| ||||||| |    
T  17992109 ctttccaaacaagttggaacccactacttctaaagctaatgggaggccagcagcatatttaactacacggtttaaaatatagttataactagaatcaatt 17992208  T
Q  222 tgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaaca 321  Q
    |  ||  ||||||| ||||||||||| | || |||||| ||||||| ||  |||||  | | |  ||||||| ||  || ||||||||||| || |||||    
T  17992209 tcgttgcctttaaatgccttccaccttaacagttcaagagcttcttcctcatttaatccatctacttcatatattgttttaatcccatgacatgttaaca 17992308  T
Q  322 agtttttatctcgagtggtaacaatcactctactgcca 359  Q
    | | ||| |||||||||||||  || ||||| ||||||    
T  17992309 aatgtttgtctcgagtggtaatgatgactctgctgcca 17992346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 368
Target Start/End: Original strand, 57072 - 57434
Alignment:
Q  6 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 105  Q
    |||||| || ||||||||||||||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| |    
T  57072 aaaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagatt 57171  T
Q  106 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactc 205  Q
    |||||||| |||||| ||||||| ||||||| ||||| | || ||| ||||||||||||||||| | ||||||| ||| |||| ||| |||||     ||    
T  57172 tccattctcctatattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcctgaagcataagttactgcaaggtgtaaaacgttgtc 57271  T
Q  206 ataacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatc 305  Q
      || ||| ||  ||||  |||  ||| ||||| |||||||| | ||||||||| ||||||||||  |||||||  | | ||||||||| |  |||||||    
T  57272 gaaatttggattgactttgttatttttgaaagcattccacctcaacaattcaagagcttctttctcatttaacttatctatttcatatgctctttcaatc 57371  T
Q  306 ccatgacttgctaacaagtttttatctcgagtggtaacaatcactctactgccaacaccaaac 368  Q
    ||||||| ||||| ||| | ||  |||||||||||||  |||||| |||| |||  |||||||    
T  57372 ccatgacctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaac 57434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 16692271 - 16692098
Alignment:
Q  6 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 105  Q
    ||||||||| | |||||||||||||||  ||||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| |    
T  16692271 aaaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagatt 16692172  T
Q  106 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataa 179  Q
    ||||||||||||||| ||||||| ||||||| || |||| || ||| || || ||||||||||||| |||||||    
T  16692171 tccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccagaagcataa 16692098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 368
Target Start/End: Original strand, 5089772 - 5090090
Alignment:
Q  50 aagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatt 149  Q
    |||||| ||||| || |||| | ||||||| ||||||||   ||| |  ||||| ||||||| |||||||| ||||||| |||| |||||||| |  | |    
T  5089772 aagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttctatatcctttccaaacaaattggaacccacaact 5089871  T
Q  150 tccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaacttgtttagctttaaaagccttccacctaa 249  Q
    || || |||||||||||||||| ||||||| |||   ||||||||||||| |  |||||||||| || |||     ||  |||||||||||||||||| |    
T  5089872 tctaaagccaatggaaggccagaagcataagttaccacacggtttaaaattccttcataacttggattaacagtactatttttaaaagccttccacctta 5089971  T
Q  250 gcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaacaagtttttatctcgagtggtaacaatcac 349  Q
      |||| ||| ||||| ||||  |||||  | | |  ||| |||||||  ||||||||||||| |  || ||||| ||| |||||||||||||  || ||    
T  5089972 ataattgaagagcttcgttctcatttaaaccatctacttcgtatgttatatcaatcccatgacattttagcaagtgtttgtctcgagtggtaatgatgac 5090071  T
Q  350 tctactgccaacaccaaac 368  Q
    ||| ||||||| |||||||    
T  5090072 tctgctgccaagaccaaac 5090090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 26137176 - 26137033
Alignment:
Q  122 ctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaact 221  Q
    ||||||| ||||| ||||||| | || ||| || || || |||||||||| |||||| || | ||||| |||||||||| | ||||||||||| |||       
T  26137176 ctttccaaacaagctggaacccactacttctaaagctaacggaaggccagaagcatatttaactgcactgtttaaaatataatcataacttgagtcattg 26137077  T
Q  222 tgtttagctttaaaagccttccacctaagcaattcaagggcttc 265  Q
    || |||  |||||||||| ||||||||| ||||||||| |||||    
T  26137076 tggttacttttaaaagccatccacctaaacaattcaagagcttc 26137033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 35903 - 35769
Alignment:
Q  234 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaacaagtttttatctc 333  Q
    |||||||||||||| | ||||||||| ||||| ||||  |||||||  | | |||| || |||  |||||||||||||||||||| ||| | ||| ||||    
T  35903 aaagccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctc 35804  T
Q  334 gagtggtaacaatcactctactgccaacaccaaac 368  Q
    |||||||||  |||||| |||| |||  |||||||    
T  35803 gagtggtaatgatcactttacttccaggaccaaac 35769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 28626 - 28492
Alignment:
Q  234 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctaacaagtttttatctc 333  Q
    ||||| |||||||| | ||||||||| ||||| ||||  |||||||  | | ||||||||| |  |||||||||||||||||||| ||| | ||| | ||    
T  28626 aaagcgttccacctcatcaattcaagagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgacttgctagcaattgtttgtttc 28527  T
Q  334 gagtggtaacaatcactctactgccaacaccaaac 368  Q
    |||||||||  |||||| |||| |||  |||||||    
T  28526 gagtggtaatgatcactttacttccaggaccaaac 28492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 44262 - 44178
Alignment:
Q  105 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcac 189  Q
    ||||||||| ||||||  |||||| | ||||| ||||| | || ||| || |||||||||||||||| ||||||| ||| |||||    
T  44262 ttccattctcctatattatttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 44178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 31906458 - 31906285
Alignment:
Q  6 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 105  Q
    ||||||||  |||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||||||  ||   ||| |    
T  31906458 aaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagatt 31906359  T
Q  106 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataa 179  Q
     |||||||| ||||| ||||||| | || |||||||| |  | |  ||| ||||||||||| |||| |||||||    
T  31906358 cccattcttgtatattctttccaaataaattggaaccaataactatcaaagccaatggaagtccagaagcataa 31906285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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