View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_49 (Length: 367)
Name: NF8606A_low_49
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 39535961 - 39535635
Alignment:
| Q |
19 |
aatactgacaccaaccacggccaccaacacataataatttgaaacaatgacataattcagtcccagtaataacattctattcgttgaacaaaataatgcg |
118 |
Q |
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| T |
39535961 |
aatactgacaccaaccacggccaccaacacataataatttgaaacaatgacataattcagtcccagtaataacattctatgggttgaacaaaataatgcg |
39535862 |
T |
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| Q |
119 |
gcaaataaatggggnnnnnnnctcaaagttggataaataatatctatctaactcaatacatcatgtgtttgcacgtgcaaccaaaatgagaatcaaataa |
218 |
Q |
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| T |
39535861 |
gcaaataaaaggg-aaaaaaactcaaagttggataaataatatcta----actcaatacatcatgtgtttgcacgtgaaaccaaaatgagaataaaataa |
39535767 |
T |
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| Q |
219 |
aactccaactatatcatcatcattaattcataattatccatagcctaaaaagaaaatgtaaatagttccaatcctactaccagtaccaccattctgtgtc |
318 |
Q |
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| T |
39535766 |
aactccaactatatcatcatcattaattcataattatccatagcctaaaaagaaaatgtaaatagttccaatcctactaccagtaccaccattctgtgtc |
39535667 |
T |
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| Q |
319 |
tgctggtatgcgctacattccaaggtgatgtc |
350 |
Q |
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| T |
39535666 |
tgctggtatgcgctacattccaaggtgatgtc |
39535635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 39519745 - 39519773
Alignment:
| Q |
322 |
tggtatgcgctacattccaaggtgatgtc |
350 |
Q |
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| T |
39519745 |
tggtatgcgctacattccaaggtgatgtc |
39519773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 24894488 - 24894520
Alignment:
| Q |
45 |
acacataataatttgaaacaatgacataattca |
77 |
Q |
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| T |
24894488 |
acacataataatttgaaaaaatgacataattca |
24894520 |
T |
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