View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_63 (Length: 355)

Name: NF8606A_low_63
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_63
NF8606A_low_63
[»] chr6 (3 HSPs)
chr6 (194-298)||(20384576-20384680)
chr6 (194-298)||(20385487-20385591)
chr6 (197-298)||(18022064-18022164)
[»] chr5 (4 HSPs)
chr5 (194-288)||(18139341-18139434)
chr5 (196-296)||(19005773-19005873)
chr5 (197-240)||(18650872-18650915)
chr5 (197-241)||(18650379-18650423)
[»] chr8 (6 HSPs)
chr8 (194-298)||(29359608-29359711)
chr8 (196-298)||(29360568-29360669)
chr8 (195-291)||(28899224-28899320)
chr8 (194-298)||(28899797-28899893)
chr8 (197-240)||(3461720-3461763)
chr8 (194-298)||(26067652-26067756)
[»] chr3 (2 HSPs)
chr3 (195-298)||(41951610-41951713)
chr3 (194-298)||(13499629-13499733)
[»] chr7 (2 HSPs)
chr7 (215-318)||(11039775-11039878)
chr7 (197-240)||(39182594-39182637)
[»] chr4 (2 HSPs)
chr4 (194-268)||(18582571-18582644)
chr4 (195-300)||(23571191-23571296)
[»] chr1 (1 HSPs)
chr1 (226-298)||(32771008-32771080)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 20384576 - 20384680
Alignment:
Q  194 ctaaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttg 293  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||  ||| |||||||||||||| ||||    
T  20384576 ctaaaatgcacttttggccccccaagtttcacaaacttgtgattttagtcctccaaatttgaaaatagcacttttgaccccttaagtttcaccccatttg 20384675  T
Q  294 caaaa 298  Q
    |||||    
T  20384676 caaaa 20384680  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 20385591 - 20385487
Alignment:
Q  194 ctaaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttg 293  Q
    ||||||||||||||||||| | ||||||||||||||||  |||||||| || |||| ||||||||||||||||||  ||| | |||||||||||| ||||    
T  20385591 ctaaaatgcacttttggccccccaagtttcacaaacttatgattttggcccctcaaatttgaaaatagcacttttgccccctaaagtttcaccccctttg 20385492  T
Q  294 caaaa 298  Q
     ||||    
T  20385491 taaaa 20385487  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 18022164 - 18022064
Alignment:
Q  197 aaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttgcaa 296  Q
    ||||||||||||| |||| |||||||   |||||||||||||||  |  || | ||||||||||||||| ||| ||| | |||||||||| | |||||||    
T  18022164 aaatgcacttttgacctc-caagttttcaaaacttgcgattttgacctctctattttgaaaatagcactattaacccctcaagtttcacctcatttgcaa 18022066  T
Q  297 aa 298  Q
    ||    
T  18022065 aa 18022064  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 288
Target Start/End: Complemental strand, 18139434 - 18139341
Alignment:
Q  194 ctaaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcacccc 288  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||| ||||||||||||||    
T  18139434 ctaaaatgcactttcggcccctcaagtttcacaaacttgcgattttgg-cccccaagtttgaaaatagcacttttacccccttaagtttcacccc 18139341  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 19005873 - 19005773
Alignment:
Q  196 aaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttgca 295  Q
    ||||||||||||||| | |  ||||||||||||||||||||||||| ||  ||||||||||||||| ||||||  |||||||||||||||||| ||||||    
T  19005873 aaaatgcacttttggtccccaaagtttcacaaacttgcgattttggccccccaagtttgaaaatagaactttttcccctttaagtttcaccccctttgca 19005774  T
Q  296 a 296  Q
    |    
T  19005773 a 19005773  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 18650915 - 18650872
Alignment:
Q  197 aaatgcacttttggcctctcaagtttcacaaacttgcgattttg 240  Q
    |||||||||||||||| | |||||||||||||||||| ||||||    
T  18650915 aaatgcacttttggccccccaagtttcacaaacttgcaattttg 18650872  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 18650379 - 18650423
Alignment:
Q  197 aaatgcacttttggcctctcaagtttcacaaacttgcgattttgg 241  Q
    ||||||| |||| | | ||||||||||||||||||||||||||||    
T  18650379 aaatgcattttttgtccctcaagtttcacaaacttgcgattttgg 18650423  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 29359608 - 29359711
Alignment:
Q  194 ctaaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttg 293  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||| | ||  |||||||||||||||||||||| |||| |||||||||||||| ||||    
T  29359608 ctaaaatgcacttttggccacccaagtgtcacaaacttgcgattttagcccc-caagtttgaaaatagcacttttttccccttaagtttcaccccctttg 29359706  T
Q  294 caaaa 298  Q
    |||||    
T  29359707 caaaa 29359711  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 29360669 - 29360568
Alignment:
Q  196 aaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttgca 295  Q
    |||||||||||||||||  || |||||||||||||||||||||| | ||  |||||||||||||| |||||||  ||| |||||||||||  | ||||||    
T  29360669 aaaatgcacttttggcccgtctagtttcacaaacttgcgattttag-cccccaagtttgaaaataacactttttcccccttaagtttcactgcctttgca 29360571  T
Q  296 aaa 298  Q
    |||    
T  29360570 aaa 29360568  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 28899224 - 28899320
Alignment:
Q  195 taaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtc-cttcaagtttgaaaatagcacttttatccctttaagtttcaccccttt 291  Q
    |||||||||||||||||| | |||||||||||||||||||||      | |  ||||||||||||||||||||||  ||| |||||||||||||||||    
T  28899224 taaaatgcacttttggccccccaagtttcacaaacttgcgatccccccctccccaagtttgaaaatagcactttt-cccccttaagtttcaccccttt 28899320  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 28899893 - 28899797
Alignment:
Q  194 ctaaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttg 293  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||| |||      || |||||| |||||||  |||||||||||||||||| ||||    
T  28899893 ctaaaatgaacttttggcccc-caagtttcacaaacttgcgattttgg-cct-----cttaaaaatatcactttt-gccctttaagtttcaccccctttg 28899802  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 3461720 - 3461763
Alignment:
Q  197 aaatgcacttttggcctctcaagtttcacaaacttgcgattttg 240  Q
    ||||||||||||||||   |||||||||||||||||||||||||    
T  3461720 aaatgcacttttggccatccaagtttcacaaacttgcgattttg 3461763  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 26067756 - 26067652
Alignment:
Q  194 ctaaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttg 293  Q
    ||||||||||||||||||| | |||||||   |||||||||||||||| ||  | | ||| ||||||||| | ||  |||  ||||||||| |||||| |    
T  26067756 ctaaaatgcacttttggccccccaagtttgtaaaacttgcgattttggcccccctattttcaaaatagcattattggccccctaagtttcaaccctttcg 26067657  T
Q  294 caaaa 298  Q
    |||||    
T  26067656 caaaa 26067652  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 41951713 - 41951610
Alignment:
Q  195 taaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttgc 294  Q
    ||||||||| ||||| |||| |||||| || ||| ||||||||||| |||  ||||||||||||||||||||||  | | |||||||||||||| |||||    
T  41951713 taaaatgcatttttgacctcccaagttccataaatttgcgattttgatcccccaagtttgaaaatagcacttttgcctccttaagtttcaccccctttgc 41951614  T
Q  295 aaaa 298  Q
    ||||    
T  41951613 aaaa 41951610  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 13499629 - 13499733
Alignment:
Q  194 ctaaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttg 293  Q
    ||||||||||||||||||| | |||||||   |||||||||||||||  ||| ||||||||||||||||||||||  |||   |||||||||||| |||     
T  13499629 ctaaaatgcacttttggccccccaagtttgtaaaacttgcgattttgaccctccaagtttgaaaatagcacttttggccccccaagtttcaccccctttt 13499728  T
Q  294 caaaa 298  Q
    |||||    
T  13499729 caaaa 13499733  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 11039878 - 11039775
Alignment:
Q  215 tcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttgcaaaatcataatccccattat 314  Q
    ||||||||||||||||||  ||||||||||  ||| ||||||||||||| ||||  ||| |||||||||||| | |||  |||| |||||||||| |||     
T  11039878 tcaagtttcacaaacttgtaattttggtcccccaaatttgaaaatagcatttttgcccccttaagtttcacctcctttataaaaccataatcccccttaa 11039779  T
Q  315 tttt 318  Q
    ||||    
T  11039778 tttt 11039775  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 39182594 - 39182637
Alignment:
Q  197 aaatgcacttttggcctctcaagtttcacaaacttgcgattttg 240  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||    
T  39182594 aaatgcacttttagcccctcaagtttcacaaacttgtgattttg 39182637  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 18582571 - 18582644
Alignment:
Q  194 ctaaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcactttt 268  Q
    |||||||||| ||||||  |||||||||||||||||||||||||||| |||  ||| ||| ||||||||||||||    
T  18582571 ctaaaatgcatttttggtttctcaagtttcacaaacttgcgattttgatcc-ccaaatttaaaaatagcactttt 18582644  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 23571191 - 23571296
Alignment:
Q  195 taaaatgcacttttggcctctcaagtttcacaaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttgc 294  Q
    |||||||||||||||  | |||||||||   ||| |||  ||||||| || |||| ||| ||||||||| ||||  ||||| ||||||||||||||||||    
T  23571191 taaaatgcacttttgatccctcaagttttctaaatttgtaattttggcccctcaaatttaaaaatagcatttttggcccttcaagtttcaccccttttgc 23571290  T
Q  295 aaaatc 300  Q
    ||||||    
T  23571291 aaaatc 23571296  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 32771008 - 32771080
Alignment:
Q  226 aaacttgcgattttggtccttcaagtttgaaaatagcacttttatccctttaagtttcaccccttttgcaaaa 298  Q
    |||||||||||||||  |   ||||||||||||||||||||||   ||  ||||||||||||| |||||||||    
T  32771008 aaacttgcgattttgacctcccaagtttgaaaatagcacttttgaacccctaagtttcaccccctttgcaaaa 32771080  T

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