View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_67 (Length: 348)
Name: NF8606A_low_67
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_67 |
 | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 37571841 - 37571506
Alignment:
| Q |
8 |
caactagatacctgtacttcagttcctcaagcacatttgatacagtcagaaattttccagcacacctagctggatagcatctctcatagcatgccagttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37571841 |
caactagatacctgtacttcagttcctcaagcacatttgatacagtcagaaattttccagcacacctagctggatagcatctctcatagcatgccagttt |
37571742 |
T |
|
| Q |
108 |
ccatacaatccatttgtaatgattcaagacccacctagagagatgtgcaattgaatttaaaactacgccaattaagactaggcaaaagagcattgtttaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37571741 |
ccatacaatccatttgtaatgattcaagacccacctagagagatgtgcaattgaatttaaaactacgccaattaagactaggcaaaagagcattgtttaa |
37571642 |
T |
|
| Q |
208 |
gtaaaacataatacaccaaagtgccctccaagtactaaactccgtaaattattaaatttaaccacagaggagctcttatcattcacataacaattgaata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37571641 |
gtaaaacataatacaccaaagtgccctccaagtactaaactccgtaaattattaaatttaaccacagaggagctcttatcattcacataacaattgaata |
37571542 |
T |
|
| Q |
308 |
tatcaagttgcaattactttctaacatgctctaact |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37571541 |
tatcaagttgcaattactttctaacatgctctaact |
37571506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 28564 - 28693
Alignment:
| Q |
15 |
atacctgtacttcagttcctcaagcacatttgatacagtcagaaattttccagcacacctagctggatagcatctctcatagcatgccagtttccataca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28564 |
atacctgtacttcagttcctcaagcacatttgatacagtcagaaattttcccgcacacctagctggatagtatctctcatagcatgccagtttccataca |
28663 |
T |
|
| Q |
115 |
atccatttgtaatgattcaagacccaccta |
144 |
Q |
| |
|
||||| |||||||||||||| ||||||||| |
|
|
| T |
28664 |
atccacttgtaatgattcaatacccaccta |
28693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 10433687 - 10433552
Alignment:
| Q |
15 |
atacctgtacttcagttcctcaagcacatttgatacagtcagaaattttccagcacacctagctggatagcatctctcatagcatgccagtttccataca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10433687 |
atacctgtacttcagttcctcaagcacatttgatacagttagaaattttcccgcacacctagctggatagtatctctcatagcatgccagtttccataca |
10433588 |
T |
|
| Q |
115 |
atccatttgtaatgattcaagacccacctagagaga |
150 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
10433587 |
atccacttgtaatgattcaatacccacctaaagaga |
10433552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University