View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_69 (Length: 339)
Name: NF8606A_low_69
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 219539 - 219210
Alignment:
| Q |
7 |
acaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaa |
106 |
Q |
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| T |
219539 |
acaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaa |
219440 |
T |
|
| Q |
107 |
attgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaa |
206 |
Q |
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| T |
219439 |
attgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaa |
219340 |
T |
|
| Q |
207 |
acgttgtgccaatctcttaaccccttgatgatgatagctattaaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaa |
306 |
Q |
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| T |
219339 |
acgttgtgccaatctcttaaccccttgatgatgatagctattaaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaa |
219240 |
T |
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| Q |
307 |
ggtgtgtttttaacaaccttaataacatgt |
336 |
Q |
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| T |
219239 |
ggtgtgtttttaacaaccttaataacatgt |
219210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 49 - 323
Target Start/End: Original strand, 31651709 - 31651980
Alignment:
| Q |
49 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
148 |
Q |
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| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
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| Q |
149 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatt |
248 |
Q |
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||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |
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| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctatt |
31651908 |
T |
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| Q |
249 |
aaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgtgtttttaacaac |
323 |
Q |
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||||||||| |||||| |||| || |||||||||||||||||||| | ||||||||| |||| |||||| |
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| T |
31651909 |
aaccaaaat---gtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaac |
31651980 |
T |
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