View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_70 (Length: 335)

Name: NF8606A_low_70
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_70
NF8606A_low_70
[»] chr1 (8 HSPs)
chr1 (170-316)||(27662216-27662362)
chr1 (15-164)||(18712121-18712270)
chr1 (11-117)||(21710186-21710292)
chr1 (11-117)||(20851714-20851819)
chr1 (11-117)||(20858341-20858446)
chr1 (11-117)||(21705644-21705749)
chr1 (24-117)||(41111260-41111354)
chr1 (110-159)||(41111358-41111407)
[»] scaffold0247 (1 HSPs)
scaffold0247 (15-161)||(10683-10829)
[»] chr7 (22 HSPs)
chr7 (15-164)||(16676696-16676845)
chr7 (15-164)||(17650932-17651081)
chr7 (24-117)||(13743028-13743121)
chr7 (15-125)||(11389910-11390020)
chr7 (24-158)||(13123506-13123651)
chr7 (41-119)||(20311631-20311709)
chr7 (24-108)||(12710496-12710580)
chr7 (24-161)||(13006752-13006901)
chr7 (26-161)||(12591230-12591377)
chr7 (15-117)||(16090457-16090559)
chr7 (15-107)||(11383440-11383532)
chr7 (15-86)||(13678835-13678906)
chr7 (15-87)||(14320243-14320315)
chr7 (11-117)||(2464732-2464838)
chr7 (41-130)||(21231554-21231643)
chr7 (37-117)||(3858007-3858087)
chr7 (110-159)||(3857953-3858003)
chr7 (27-117)||(29181690-29181780)
chr7 (60-108)||(2966383-2966431)
chr7 (110-158)||(12710435-12710483)
chr7 (60-108)||(20907038-20907086)
chr7 (14-86)||(46625331-46625403)
[»] scaffold0634 (1 HSPs)
scaffold0634 (5-126)||(3035-3156)
[»] chr6 (19 HSPs)
chr6 (24-158)||(29614738-29614883)
chr6 (15-125)||(18799822-18799932)
chr6 (15-127)||(21565751-21565863)
chr6 (24-161)||(34640575-34640724)
chr6 (24-161)||(34647249-34647398)
chr6 (24-161)||(12167683-12167832)
chr6 (24-161)||(19286592-19286741)
chr6 (66-161)||(24513370-24513465)
chr6 (24-117)||(19877776-19877870)
chr6 (24-98)||(19786529-19786604)
chr6 (32-161)||(19883560-19883701)
chr6 (24-117)||(20008529-20008622)
chr6 (14-130)||(25396555-25396671)
chr6 (15-161)||(25470290-25470448)
chr6 (37-159)||(21365067-21365200)
chr6 (37-159)||(23969049-23969182)
chr6 (5-127)||(19300308-19300429)
chr6 (110-161)||(19786455-19786506)
chr6 (110-159)||(19877874-19877923)
[»] chr2 (14 HSPs)
chr2 (24-158)||(26583168-26583313)
chr2 (15-127)||(23089594-23089706)
chr2 (19-119)||(23878325-23878425)
chr2 (15-155)||(23101994-23102134)
chr2 (15-130)||(21907750-21907865)
chr2 (24-161)||(5706610-5706759)
chr2 (15-117)||(29281368-29281470)
chr2 (66-164)||(23264515-23264613)
chr2 (15-86)||(23063056-23063127)
chr2 (11-98)||(25181501-25181587)
chr2 (24-117)||(9957-10050)
chr2 (15-76)||(26884578-26884639)
chr2 (15-87)||(27208322-27208394)
chr2 (15-87)||(27210657-27210729)
[»] chr8 (7 HSPs)
chr8 (41-164)||(14057148-14057271)
chr8 (41-164)||(25111385-25111508)
chr8 (15-117)||(23865924-23866026)
chr8 (11-117)||(24321252-24321357)
chr8 (110-161)||(17054009-17054060)
chr8 (41-119)||(18613619-18613697)
chr8 (110-158)||(23866030-23866078)
[»] chr4 (6 HSPs)
chr4 (41-164)||(15407485-15407608)
chr4 (25-127)||(14486052-14486154)
chr4 (15-161)||(8046420-8046577)
chr4 (24-161)||(53483022-53483171)
chr4 (6-76)||(11847468-11847537)
chr4 (15-117)||(16147412-16147514)
[»] scaffold0461 (2 HSPs)
scaffold0461 (15-164)||(581-730)
scaffold0461 (15-76)||(7605-7666)
[»] scaffold0025 (1 HSPs)
scaffold0025 (25-158)||(14977-15121)
[»] chr3 (10 HSPs)
chr3 (15-155)||(55499658-55499798)
chr3 (15-125)||(16802029-16802139)
chr3 (25-158)||(24192274-24192418)
chr3 (15-117)||(41455741-41455844)
chr3 (15-117)||(14865216-14865319)
chr3 (5-106)||(13324381-13324481)
chr3 (111-160)||(10390034-10390083)
chr3 (111-160)||(10415123-10415172)
chr3 (111-160)||(10421793-10421842)
chr3 (60-125)||(12034007-12034072)
[»] scaffold0124 (1 HSPs)
scaffold0124 (15-164)||(34861-35010)
[»] scaffold1773 (1 HSPs)
scaffold1773 (24-117)||(499-592)
[»] scaffold0310 (1 HSPs)
scaffold0310 (41-158)||(6907-7024)
[»] scaffold0235 (2 HSPs)
scaffold0235 (15-151)||(15475-15611)
scaffold0235 (15-151)||(23192-23328)
[»] scaffold0077 (1 HSPs)
scaffold0077 (27-155)||(4153-4281)
[»] scaffold0154 (1 HSPs)
scaffold0154 (5-126)||(30263-30383)
[»] scaffold0476 (1 HSPs)
scaffold0476 (15-119)||(3871-3975)
[»] scaffold0456 (4 HSPs)
scaffold0456 (66-161)||(398-504)
scaffold0456 (66-161)||(7543-7649)
scaffold0456 (5-55)||(358-407)
scaffold0456 (5-55)||(7503-7552)
[»] scaffold0026 (2 HSPs)
scaffold0026 (66-161)||(12437-12543)
scaffold0026 (5-55)||(12534-12584)
[»] scaffold0117 (1 HSPs)
scaffold0117 (24-158)||(9167-9312)
[»] scaffold0085 (1 HSPs)
scaffold0085 (11-117)||(4253-4358)
[»] scaffold0222 (1 HSPs)
scaffold0222 (15-119)||(16143-16247)
[»] scaffold0004 (2 HSPs)
scaffold0004 (15-143)||(116238-116366)
scaffold0004 (5-130)||(129204-129328)
[»] scaffold0107 (1 HSPs)
scaffold0107 (41-164)||(41113-41236)
[»] chr5 (14 HSPs)
chr5 (24-161)||(23527950-23528099)
chr5 (15-119)||(18408521-18408625)
chr5 (37-117)||(19236294-19236374)
chr5 (66-125)||(22439310-22439369)
chr5 (11-98)||(22460525-22460611)
chr5 (11-117)||(22467149-22467254)
chr5 (111-161)||(20819639-20819689)
chr5 (111-161)||(20826739-20826789)
chr5 (5-99)||(34829446-34829539)
chr5 (37-117)||(28889978-28890058)
chr5 (37-117)||(28896682-28896762)
chr5 (37-117)||(28909930-28910010)
chr5 (37-117)||(28931622-28931702)
chr5 (37-117)||(28946325-28946405)
[»] scaffold0090 (1 HSPs)
scaffold0090 (14-119)||(17538-17643)
[»] scaffold0020 (1 HSPs)
scaffold0020 (15-127)||(102489-102601)
[»] scaffold0139 (1 HSPs)
scaffold0139 (19-165)||(15521-15667)
[»] scaffold0053 (2 HSPs)
scaffold0053 (15-117)||(80072-80174)
scaffold0053 (5-86)||(81826-81906)
[»] scaffold0317 (1 HSPs)
scaffold0317 (15-86)||(728-799)
[»] scaffold0028 (1 HSPs)
scaffold0028 (14-130)||(65476-65592)
[»] scaffold0029 (3 HSPs)
scaffold0029 (11-117)||(91783-91890)
scaffold0029 (11-117)||(97509-97616)
scaffold0029 (110-158)||(111330-111378)
[»] scaffold0261 (1 HSPs)
scaffold0261 (5-90)||(24178-24262)
[»] scaffold0206 (1 HSPs)
scaffold0206 (15-76)||(18060-18121)
[»] scaffold0138 (1 HSPs)
scaffold0138 (5-86)||(1181-1261)
[»] scaffold0720 (1 HSPs)
scaffold0720 (15-126)||(3831-3943)
[»] scaffold0483 (1 HSPs)
scaffold0483 (5-76)||(11631-11701)
[»] scaffold0034 (1 HSPs)
scaffold0034 (5-108)||(72645-72747)
[»] scaffold0023 (1 HSPs)
scaffold0023 (60-117)||(134867-134924)
[»] scaffold0001 (1 HSPs)
scaffold0001 (15-76)||(493650-493711)
[»] scaffold0924 (1 HSPs)
scaffold0924 (110-158)||(1343-1391)
[»] scaffold0006 (1 HSPs)
scaffold0006 (110-158)||(49597-49645)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 170 - 316
Target Start/End: Complemental strand, 27662362 - 27662216
Alignment:
Q  170 gttcactgtttatgaagtctgcacaatgttcaaacatctaacttccttgagcagtgtttagttactcatgaaaaaacaagtaattaacagatcttacata 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27662362 gttcactgtttatgaagtctgcacaatgttcaaacatctaacttccttgagcagtgtttagttactcatgaaaaaacaagtaattaacagatcttactta 27662263  T
Q  270 ggtggannnnnnnnactcaaaccaagtcaagtcttttcattgctaat 316  Q
    ||||||        ||||||||||||| |||||||||||||||||||    
T  27662262 ggtggattttttttactcaaaccaagttaagtcttttcattgctaat 27662216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 18712121 - 18712270
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||| | |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||| |||||||||| ||  |||||| ||||||| | |||     
T  18712121 ttcaaaaggtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaaagttggggttccgctcgctaacggta 18712219  T
Q  114 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 164  Q
    ||||| ||||||||||| ||||||| |||  | ||||||||| || |||||    
T  18712220 cgcttaagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 18712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 21710186 - 21710292
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagg 110  Q
    |||||||  ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| |    
T  21710186 aagattcggaaaaaggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatg 21710285  T
Q  111 gttcgct 117  Q
    |||||||    
T  21710286 gttcgct 21710292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 20851819 - 20851714
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagg 110  Q
    |||||||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| |    
T  20851819 aagattcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatg 20851721  T
Q  111 gttcgct 117  Q
    | |||||    
T  20851720 ggtcgct 20851714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 20858446 - 20858341
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagg 110  Q
    |||||||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| |    
T  20858446 aagattcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacg 20858348  T
Q  111 gttcgct 117  Q
    | |||||    
T  20858347 ggtcgct 20858341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 21705644 - 21705749
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagg 110  Q
    |||||||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| |    
T  21705644 aagattcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacg 21705742  T
Q  111 gttcgct 117  Q
    | |||||    
T  21705743 ggtcgct 21705749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 41111260 - 41111354
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgcttagggttcgct 117  Q
    ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||| || |||||    
T  41111260 aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgct 41111354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 41111358 - 41111407
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 159  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  41111358 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 41111407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 10683 - 10829
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| |||||||||||    |||||||||||||||| | ||| || |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  10683 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttagggttc 10782  T
Q  115 gcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  10783 gcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 16676696 - 16676845
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||    
T  16676696 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttc 16676795  T
Q  115 gcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 164  Q
    ||||||||||| |  | |||||||||||| ||||||||||| ||||||||    
T  16676796 gcttgagcgaattcttgacagaatcaaaatggtttttcgcttacaggttc 16676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 17650932 - 17651081
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||    
T  17650932 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttc 17651031  T
Q  115 gcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 164  Q
    ||||||||||| |  | |||||||||||| ||||||||||| ||||||||    
T  17651032 gcttgagcgaattcttgacagaatcaaaatggtttttcgcttacaggttc 17651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 13743028 - 13743121
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| || |||||||||||| ||||||||| || |||||    
T  13743028 aggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttatagtaggtctgggttcagctcgcttacgggtcgct 13743121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 11390020 - 11389910
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||||| || |||| | |||||||||| ||||||||| ||||    
T  11390020 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgaccgactcacagtaagtctgggttccgctcgcttacggtt 11389922  T
Q  114 cgcttgagcgaa 125  Q
    ||||||||||||    
T  11389921 cgcttgagcgaa 11389910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 13123651 - 13123506
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggt 112  Q
    |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||           | |||    
T  13123651 aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggt 13123552  T
Q  113 tcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    ||||||||||||||||   |||||||||||| ||||||||||||||    
T  13123551 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 13123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 20311709 - 20311631
Alignment:
Q  41 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 119  Q
    ||||||||||||||| | ||| || |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||    
T  20311709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttgcagtaagtctgggttctgctcgcttacggttcgcttg 20311631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 12710580 - 12710496
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 108  Q
    |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||||||    
T  12710580 aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgctta 12710496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 13006752 - 13006901
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 111  Q
    ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||           | ||    
T  13006752 aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacgg 13006851  T
Q  112 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  13006852 ttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 13006901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 12591377 - 12591230
Alignment:
Q  26 gctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------agggtt 113  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggatctgggatcagttcgcttacgggtcgctcacggtt 12591278  T
Q  114 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||| ||   |||||||||||| |||||||||||||||||    
T  12591277 cgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 12591230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 16090457 - 16090559
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16090457 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16090556  T
Q  115 gct 117  Q
    |||    
T  16090557 gct 16090559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 11383532 - 11383440
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt 107  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||| |||| |||| | |||||||||| ||||||||    
T  11383532 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacagtaagtctgggttccgctcgctt 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 13678835 - 13678906
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 86  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  13678835 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 13678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 14320315 - 14320243
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 87  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||||||| ||||||    
T  14320315 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaa 14320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 2464732 - 2464838
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagg 110  Q
    |||||||| ||| || || |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| |    
T  2464732 aagattcagaaaaagactaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacg 2464831  T
Q  111 gttcgct 117  Q
    | |||||    
T  2464832 ggtcgct 2464838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 21231643 - 21231554
Alignment:
Q  41 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 130  Q
    |||||||||||||||    ||||  ||||||||||| ||| |||||| ||  |||||| ||||||| | |||||||||||||||||||||    
T  21231643 cttcgcttaagcgacgaccagtttgcttaagcgaccagctcacagaaagttggggttccgctcgctgacggttcgcttgagcgaacttct 21231554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 3858087 - 3858007
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  3858087 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 3858007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 3858003 - 3857953
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatc-aaaacggtttttcgctcaca 159  Q
    |||||||||||||||||||  ||||||||| |||| |||||||||||||||    
T  3858003 ggttcgcttgagcgaactttgaacagaatcaaaaatggtttttcgctcaca 3857953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 29181780 - 29181690
Alignment:
Q  27 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    ||||||||  |||| || ||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  29181780 ctgactaacactcagtttgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttatgggtcgct 29181690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 2966383 - 2966431
Alignment:
Q  60 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 108  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  2966383 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 2966431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 12710483 - 12710435
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    |||||||||||||||||||   |||||||||||| ||||||| ||||||    
T  12710483 ggttcgcttgagcgaactttggacagaatcaaaatggtttttggctcac 12710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 20907086 - 20907038
Alignment:
Q  60 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 108  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  20907086 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 20907038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 46625331 - 46625403
Alignment:
Q  14 attcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 86  Q
    ||||||| || ||||||||||| |  |||||||||||||||| | | | || ||||||||||| |||||||||    
T  46625331 attcaaagagtggctgactaagacctacttcgcttaagcgacggctggctcgcttaagcgacctgcttacaga 46625403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 3035 - 3156
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcg 104  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||  |||||    
T  3035 gaagcaaaagttcagaaagaggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggtttcgctcg 3134  T
Q  105 cttagggttcgcttgagcgaac 126  Q
    || |  ||||||||||||||||    
T  3135 ctcacagttcgcttgagcgaac 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 29614883 - 29614738
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggt 112  Q
    |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||||| |||||||||||| ||||||||           | |||    
T  29614883 aggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccgacttacagtaggtctgggttcagctcgcttacgggttgctcacggt 29614784  T
Q  113 tcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||    
T  29614783 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 29614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 18799822 - 18799932
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| |||||||||||| | |||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||    
T  18799822 ttcaaaaagtggctgactaaggttgacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttacggttc 18799921  T
Q  115 gcttgagcgaa 125  Q
    |||| ||||||    
T  18799922 gcttaagcgaa 18799932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 21565863 - 21565751
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| ||||||||||||   ||||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    
T  21565863 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttc 21565764  T
Q  115 gcttgagcgaact 127  Q
    |||||||||||||    
T  21565763 gcttgagcgaact 21565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 34640724 - 34640575
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 111  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34640724 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34640625  T
Q  112 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34640624 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 34647398 - 34647249
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 111  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34647398 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34647299  T
Q  112 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34647298 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 12167683 - 12167832
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 111  Q
    ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||           | ||    
T  12167683 aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacgg 12167782  T
Q  112 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  12167783 ttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 12167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 19286592 - 19286741
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 111  Q
    ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||           | ||    
T  19286592 aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacgg 19286691  T
Q  112 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19286692 ttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19286741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 24513465 - 24513370
Alignment:
Q  66 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    ||||||||||||||| |||||| || ||||||| ||||||| | |||||||||||||||||||||   ||||| |||| | ||||||||| |||||    
T  24513465 cttaagcgaccggctcacagaaagtttgggttccgctcgctaacggttcgcttgagcgaacttctggaagaatgaaaatgatttttcgcttacagg 24513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 19877776 - 19877870
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgcttagggttcgct 117  Q
    ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||| || |||||    
T  19877776 aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgct 19877870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 19786604 - 19786529
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttc 98  Q
    ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||||||    
T  19786604 aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttc 19786529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 19883560 - 19883701
Alignment:
Q  32 taaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttg 119  Q
    ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||           | ||||||||||    
T  19883560 taaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttg 19883659  T
Q  120 agcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||   ||||||| |||| |||||||||||||||||    
T  19883660 agcgaactttggacagaatgaaaatggtttttcgctcacagg 19883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 20008622 - 20008529
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||||| ||||  |||| ||||||||||| || | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20008622 aggctgtctaacactcagttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20008529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 25396555 - 25396671
Alignment:
Q  14 attcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    |||||||||| || |||||||| |  |||||||||||||||| | | | || |||||||||||| ||||||||  ||  |||||| ||||||| | ||||    
T  25396555 attcaaaaagtggttgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacagagagttggggttccgctcgctaacggtt 25396654  T
Q  114 cgcttgagcgaacttct 130  Q
    ||||| || ||||||||    
T  25396655 cgcttaagtgaacttct 25396671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 25470448 - 25470290
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt------ 107  Q
    |||| ||| ||||||||||||| ||||||||||||||||||   |||||| |||||||||||  ||||||| ||| |||||| || | ||||||          
T  25470448 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggttctgggctcagttcgcttacgggt 25470349  T
Q  108 -----agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
         | |||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  25470348 cgctcacggttcgcttgagcgaattttggacagaatcaaaatggtttttcgctcacagg 25470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 21365200 - 21365067
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 125  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  21365200 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 21365101  T
Q  126 cttctaacagaatcaaaacggtttttcgctcaca 159  Q
    |||   |||||||||||| |||||||||||||||    
T  21365100 ctttggacagaatcaaaatggtttttcgctcaca 21365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 23969182 - 23969049
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 125  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  23969182 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 23969083  T
Q  126 cttctaacagaatcaaaacggtttttcgctcaca 159  Q
    |||   |||||||||||| |||||||||||||||    
T  23969082 ctttggacagaatcaaaatggtttttcgctcaca 23969049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 19300429 - 19300308
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct-gctc 103  Q
    ||||||||| |||| | |||||||||||||||||||  ||||||||||||  | ||| || ||||||||||| || ||||| | || ||| |||| ||||    
T  19300429 gaagcaaag-ttcagatagaggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctcgctc 19300332  T
Q  104 gcttagggttcgcttgagcgaact 127  Q
    ||| | |||||||| |||||||||    
T  19300331 gctcacggttcgctcgagcgaact 19300308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 19786506 - 19786455
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19786506 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 19877874 - 19877923
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 159  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  19877874 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 19877923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 26583168 - 26583313
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggt 112  Q
    |||||||||||| || |||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| ||||||||           | |||    
T  26583168 aggctgactaagacttacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttacgggtcgctcacggt 26583267  T
Q  113 tcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||    
T  26583268 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 26583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 23089706 - 23089594
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| ||||||||||||   ||||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    
T  23089706 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttc 23089607  T
Q  115 gcttgagcgaact 127  Q
    |||||||||||||    
T  23089606 gcttgagcgaact 23089594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 23878325 - 23878425
Alignment:
Q  19 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    ||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  23878325 aaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 23878423  T
Q  118 tg 119  Q
    ||    
T  23878424 tg 23878425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 23102134 - 23101994
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| ||||||||||||   ||||||||||||||||    ||||| |||||| || |||||||||| | |||||||||||||||||||| |||||    
T  23102134 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagtgatcggcttacagtaagtctgggttctgctcgcttacggttc 23102035  T
Q  115 gcttgagcgaacttctaacagaatcaaaacggtttttcgct 155  Q
    |||| ||||||||  |  ||||||||||  |||||||||||    
T  23102034 gcttaagcgaactcttggcagaatcaaattggtttttcgct 23101994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 21907750 - 21907865
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||  |||||| ||||||| | ||||    
T  21907750 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggtt 21907848  T
Q  114 cgcttgagcgaacttct 130  Q
    ||||| |||||||||||    
T  21907849 cgcttaagcgaacttct 21907865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 5706759 - 5706610
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 111  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  5706759 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 5706660  T
Q  112 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  5706659 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 5706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 29281368 - 29281470
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || ||    
T  29281368 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtc 29281467  T
Q  115 gct 117  Q
    |||    
T  29281468 gct 29281470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 23264515 - 23264613
Alignment:
Q  66 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 164  Q
    |||||||||||||||||||||  ||| |||||  ||||||| | ||||||||||||||||||||| ||| ||| |||| | ||||||||| || |||||    
T  23264515 cttaagcgaccggcttacagagagtcggggtttcgctcgctaacggttcgcttgagcgaacttctgacataatgaaaatgatttttcgcttacgggttc 23264613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 23063056 - 23063127
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 86  Q
    ||||||||| ||||||||||||   |||||||||||||||| | | |||| |||||||||||||||||||||    
T  23063056 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 23063127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 25181587 - 25181501
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttc 98  Q
    |||||||| ||| |||||||||||  |||| |||||||||||||| | |||||  ||||||||||| |||||||| ||||||||||||    
T  25181587 aagattcagaaa-aggctgactaacactcagttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggtctgggttc 25181501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 9957 - 10050
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||||| ||||  |||| || ||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  9957 aggctgtctaacactcagtttgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 26884578 - 26884639
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 76  Q
    |||| ||||||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  26884578 ttcagaaagaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 26884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 27208394 - 27208322
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 87  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27208394 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 27210729 - 27210657
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 87  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27210729 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 14057271 - 14057148
Alignment:
Q  41 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 140  Q
    ||||||||||||||| | ||| || ||||||||||||||| |||||| |||||||||| ||||||| | ||||||||||||||||||| |  ||||||||    
T  14057271 cttcgcttaagcgacggctagctcgcttaagcgaccggctcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttatggcagaatca 14057172  T
Q  141 aaacggtttttcgctcacaggttc 164  Q
    ||| |||||||| ||||| |||||    
T  14057171 aaatggtttttcactcacgggttc 14057148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 25111385 - 25111508
Alignment:
Q  41 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 140  Q
    ||||||||||||||| |  ||||| |||||||||||| || |||||| |||||||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  25111385 cttcgcttaagcgacggccagttcgcttaagcgaccgactcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 25111484  T
Q  141 aaacggtttttcgctcacaggttc 164  Q
    ||| ||||||||||| || |||||    
T  25111485 aaatggtttttcgcttacgggttc 25111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 23865924 - 23866026
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    |||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  23865924 ttcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtc 23866023  T
Q  115 gct 117  Q
    |||    
T  23866024 gct 23866026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 24321357 - 24321252
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagg 110  Q
    |||||||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| |    
T  24321357 aagattcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacg 24321259  T
Q  111 gttcgct 117  Q
    | |||||    
T  24321258 ggtcgct 24321252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 17054009 - 17054060
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  17054009 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 17054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 18613619 - 18613697
Alignment:
Q  41 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 119  Q
    ||||||||||||||| | | |||| ||||||||||| |||||||||  ||  |||||| ||||||| | ||||||||||    
T  18613619 cttcgcttaagcgacggctggttcgcttaagcgacctgcttacagagagttggggttccgctcgctaacggttcgcttg 18613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 23866030 - 23866078
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    |||||||||||||||||||   |||||||||||| ||||||||| ||||    
T  23866030 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgatcac 23866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 15407485 - 15407608
Alignment:
Q  41 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 140  Q
    ||||||||||||||| |  ||||| ||||||||||||||| |||||| |||| ||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  15407485 cttcgcttaagcgacggccagttcgcttaagcgaccggctcacagaaagtctaggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 15407584  T
Q  141 aaacggtttttcgctcacaggttc 164  Q
    ||| ||||||||||| || |||||    
T  15407585 aaatggtttttcgcttacgggttc 15407608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 14486052 - 14486154
Alignment:
Q  25 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 124  Q
    ||||||||||||||||||||||||||||||  | | | || |||||||||||||||||||||  || ||||||| ||||||| | |||||||||||||||    
T  14486052 ggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagagagtttgggttccgctcgctcacggttcgcttgagcga 14486151  T
Q  125 act 127  Q
    |||    
T  14486152 act 14486154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 8046577 - 8046420
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt------- 107  Q
    |||| ||| ||||||||||||||||||||||||||||||||   ||| || |||||||||||  |||| || |||||||||||| | ||||||           
T  8046577 ttcagaaaaaggctgactaaggctcacttcgcttaagcgacgtctagctcgcttaagcgaccaacttatagtaggtctgggttcagttcgcttacgggtc 8046478  T
Q  108 ----agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
        | |||||||||||||||||||   |||||||||||| |||||||||||||||||    
T  8046477 gctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 8046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 53483022 - 53483171
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 111  Q
    ||||||||||||| |||||||||||||||||| |  ||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  53483022 aggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 53483121  T
Q  112 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  53483122 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 53483171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 11847468 - 11847537
Alignment:
Q  6 aagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 76  Q
    |||||||| |||| |||||||||||||||||||||  ||||||||||||| | |||||| |||||||||||    
T  11847468 aagcaaag-ttcagaaagaggctgactaaggctcagctcgcttaagcgacgggtagttcgcttaagcgacc 11847537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 16147514 - 16147412
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16147514 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16147415  T
Q  115 gct 117  Q
    |||    
T  16147414 gct 16147412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 730 - 581
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||||| ||  |||||  ||||||| | ||||    
T  730 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagaaagttggggtttcgctcgctgacggtt 632  T
Q  114 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 164  Q
    ||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  631 cgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 7666 - 7605
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgacc 76  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||    
T  7666 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 15121 - 14977
Alignment:
Q  25 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggtt 113  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||           | ||||    
T  15121 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcagctcgcttacggttcgctcacggtt 15022  T
Q  114 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  15021 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 55499798 - 55499658
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| |||||||||||    ||||||||||||||||   |||||| |||||||||||||||||||| | |||| ||||||||||||||| |||||    
T  55499798 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtaagtctaggttctgctcgcttacggttc 55499699  T
Q  115 gcttgagcgaacttctaacagaatcaaaacggtttttcgct 155  Q
    | |||||||||||  |  ||||||||||  |||||||||||    
T  55499698 gtttgagcgaactcttggcagaatcaaattggtttttcgct 55499658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 16802139 - 16802029
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| |||| |||||||   ||||||||||| |||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| |||||    
T  16802139 ttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttc 16802040  T
Q  115 gcttgagcgaa 125  Q
    |||||||||||    
T  16802039 gcttgagcgaa 16802029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 24192274 - 24192418
Alignment:
Q  25 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggtt-----------ctgctcgcttagggtt 113  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||           | | ||||| | ||||    
T  24192274 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcaactcacttacggttcgctcacggtt 24192373  T
Q  114 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  24192374 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 24192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 41455844 - 41455741
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgcttagggtt 113  Q
    |||| ||| ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||| || |    
T  41455844 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggt 41455745  T
Q  114 cgct 117  Q
    ||||    
T  41455744 cgct 41455741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 14865216 - 14865319
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcga-cagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    |||| ||| |||||||||||  |||| ||||||||||||| | | |||||| ||||||||||| ||||| || |||||||||||| | ||||||| || |    
T  14865216 ttcagaaaaaggctgactaacactcagttcgcttaagcgaacggctagttcgcttaagcgaccagcttagagtaggtctgggttcagttcgcttacgggt 14865315  T
Q  114 cgct 117  Q
    ||||    
T  14865316 cgct 14865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 13324481 - 13324381
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcg 104  Q
    |||||||| ||||| |||| ||||||||||||||||  ||||||||||||  | | | || |||||||||| ||||| ||||| || |||||| ||||||    
T  13324481 gaagcaaa-attcagaaagtggctgactaaggctcagctcgcttaagcgaaggctggctcgcttaagcgactggcttgcagaaagtttgggttttgctcg 13324383  T
Q  105 ct 106  Q
    ||    
T  13324382 ct 13324381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 10390083 - 10390034
Alignment:
Q  111 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 160  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10390083 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10390034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 10415172 - 10415123
Alignment:
Q  111 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 160  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10415172 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 10421842 - 10421793
Alignment:
Q  111 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 160  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10421842 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 12034072 - 12034007
Alignment:
Q  60 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 125  Q
    ||||| ||||||||||| |||||||| |||||||||||  | ||||||| || |||||| ||||||    
T  12034072 agttcgcttaagcgaccagcttacagtaggtctgggtttagttcgcttacgggtcgcttaagcgaa 12034007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 35010 - 34861
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||   ||||| ||||||| | ||||    
T  35010 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttgaggttccgctcgctgacggtt 34912  T
Q  114 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 164  Q
    ||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  34911 cgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 34861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 499 - 592
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||||||||||| ||||||||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  499 aggctgactaagactcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 6907 - 7024
Alignment:
Q  41 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 140  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| | ||||||||||| || | ||  ||||||||    
T  6907 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgattcgcttgagcaaattcctggcagaatca 7006  T
Q  141 aaacggtttttcgctcac 158  Q
    ||| ||||  ||||||||    
T  7007 aaaaggttcctcgctcac 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 15611 - 15475
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | ||| ||||||||||||| |||| |||||| ||  |||||| ||||||| | ||||    
T  15611 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagctcacttaagcgactggctcacagaaagttggggttccgctcgctgacggtt 15513  T
Q  114 cgcttgagcgaacttctaacagaatcaaaacggttttt 151  Q
    |||||||||||||||||  |||||| |||| |||||||    
T  15512 cgcttgagcgaacttctggcagaatgaaaatggttttt 15475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 23328 - 23192
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||| || ||||||| |||||| ||  ||||||  |||||| | ||||    
T  23328 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaggcaaccggctcacagaaagttggggttcaactcgctgacggtt 23230  T
Q  114 cgcttgagcgaacttctaacagaatcaaaacggttttt 151  Q
    |||||||||||||||||  |||||| |||| |||||||    
T  23229 cgcttgagcgaacttctggcagaatgaaaatggttttt 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 4281 - 4153
Alignment:
Q  27 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 126  Q
    ||||||||||   ||||||||||||||||   |||||| ||||||||| | |||||||| | |||||||||||||||| ||| |||||||||||||||||    
T  4281 ctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgatcagcttacagtaagtctgggttctgctcgattacggttcgcttgagcgaac 4182  T
Q  127 ttctaacagaatcaaaacggtttttcgct 155  Q
    |  |  ||||||||||  |||||||||||    
T  4181 tcttggcagaatcaaattggtttttcgct 4153  T

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Target: scaffold0154 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 30263 - 30383
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcg 104  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||  | | | || |||||||||||||||||||||| || | ||||  |||||    
T  30263 gaagcaaa-attcagaaagtggctgactaaggctcacttcgcttaagcgaaggttggctcgcttaagcgaccggcttacagaaagtttaggtttcgctcg 30361  T
Q  105 cttagggttcgcttgagcgaac 126  Q
    || | |||||||||||| ||||    
T  30362 ctcacggttcgcttgagtgaac 30383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 3975 - 3871
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| ||||||||||||||||||||   |||||||||||||||  ||| |||||    
T  3975 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtgagtctgggttctgctcaattacggttc 3876  T
Q  115 gcttg 119  Q
    |||||    
T  3875 gcttg 3871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 398 - 504
Alignment:
Q  66 cttaagcgaccggcttacagaaggtctgggttctgctcgcttag-----------ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgc 154  Q
    |||||||||| ||||||||||| |||||||||||||||||||||           ||||||||| ||||||||||| |||||||||||| ||||||||||    
T  398 cttaagcgactggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgc 497  T
Q  155 tcacagg 161  Q
    |||||||    
T  498 tcacagg 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 7543 - 7649
Alignment:
Q  66 cttaagcgaccggcttacagaaggtctgggttctgctcgcttag-----------ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgc 154  Q
    |||||||||| ||||||||||| |||||||||||||||||||||           ||||||||| ||||||||||| |||||||||||| ||||||||||    
T  7543 cttaagcgactggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgc 7642  T
Q  155 tcacagg 161  Q
    |||||||    
T  7643 tcacagg 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 358 - 407
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgac 55  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  358 gaagcaaa-attcagaaagaggctgactaaggttcacttcgcttaagcgac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 7503 - 7552
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgac 55  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  7503 gaagcaaa-attcagaaagaggctgactaaggttcacttcgcttaagcgac 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 12543 - 12437
Alignment:
Q  66 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct-----------tgagcgaacttctaacagaatcaaaacggtttttcgc 154  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||||           ||||||||||||| |||||||||||| ||||||||||    
T  12543 cttaagcgaccggcttacagtaggtctgggttcagctcgcttacggttcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgc 12444  T
Q  155 tcacagg 161  Q
    |||||||    
T  12443 tcacagg 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 12584 - 12534
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgac 55  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  12584 gaagcaaaagttcagaaagaggctgactaaggctcacttcgcttaagcgac 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 9312 - 9167
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggt 112  Q
    |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||           | |||    
T  9312 aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttatgggtcgctcacggt 9213  T
Q  113 tcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    ||||||||||||||||   |||||||||||| ||||||||||||||    
T  9212 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 4358 - 4253
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagg 110  Q
    |||||||| ||| ||||||||||| ||||| |||||||||||||  | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| |    
T  4358 aagattcagaaa-aggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacg 4260  T
Q  111 gttcgct 117  Q
    | |||||    
T  4259 ggtcgct 4253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 16143 - 16247
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||||||||||||||| ||  |||||| ||||||| | ||||    
T  16143 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggttagctcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggtt 16241  T
Q  114 cgcttg 119  Q
    ||||||    
T  16242 cgcttg 16247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 116238 - 116366
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||  |||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||  ||  || ||  ||||||| | ||||    
T  116238 ttcaaaaaatggctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacagagagttgggatttcgctcgctaacggtt 116336  T
Q  114 cgcttgagcgaacttctaacagaatcaaaa 143  Q
    ||||||||||||||||| ||||||| ||||    
T  116337 cgcttgagcgaacttctgacagaatgaaaa 116366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 129328 - 129204
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcg 104  Q
    |||||||| |||||||||| ||||||||||| |   ||||||||||||||| | | | || ||||||||||||||| |||||| ||  |||||| |||||    
T  129328 gaagcaaa-attcaaaaagtggctgactaagaccttcttcgcttaagcgacggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcg 129230  T
Q  105 cttagggttcgcttgagcgaacttct 130  Q
    || | ||||||||| |||||||||||    
T  129229 ctaacggttcgcttaagcgaacttct 129204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 41236 - 41113
Alignment:
Q  41 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 140  Q
    |||||||||||||||   |||||| ||||||||| ||||| |||||||||  |||||| ||||||| |  ||||||||||||||||||| | ||||||      
T  41236 cttcgcttaagcgacgtctagttcgcttaagcgatcggctcacagaaggttggggttccgctcgctgacagttcgcttgagcgaacttcaagcagaatgt 41137  T
Q  141 aaacggtttttcgctcacaggttc 164  Q
    ||| ||||||| ||| || |||||    
T  41136 aaatggttttttgcttacgggttc 41113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 23527950 - 23528099
Alignment:
Q  24 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 111  Q
    ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||           | ||    
T  23527950 aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacgg 23528049  T
Q  112 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    |||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  23528050 ttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 23528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 18408625 - 18408521
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcactt-cgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| |||||||||||| ||| || |||||||||||| | |||||  |||||||||||||||||||||| ||  |||||| ||||||| | ||||    
T  18408625 ttcaaaaagtggctgactaagg-tcattttcgcttaagcgacggctagtttgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggtt 18408527  T
Q  114 cgcttg 119  Q
    ||||||    
T  18408526 cgcttg 18408521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 19236294 - 19236374
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  19236294 ctcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgct 19236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 22439369 - 22439310
Alignment:
Q  66 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 125  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||| ||| ||||||    
T  22439369 cttaagcgaccggcttacagtaagtctgggttctgctcgcttaaggttcacttaagcgaa 22439310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 22460525 - 22460611
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttc 98  Q
    |||||||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||    
T  22460525 aagattcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttc 22460611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 22467149 - 22467254
Alignment:
Q  11 aagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagg 110  Q
    |||||||| ||| |||||| ||||  |||| | |||||||||||| | |||||| ||||| ||||| |||||||| |||||||||||| | ||||||| |    
T  22467149 aagattcagaaa-aggctgtctaacactcagtacgcttaagcgacggctagttcgcttaaccgaccagcttacagtaggtctgggttcagttcgcttatg 22467247  T
Q  111 gttcgct 117  Q
    | |||||    
T  22467248 ggtcgct 22467254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 20819639 - 20819689
Alignment:
Q  111 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20819639 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20819689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 20826739 - 20826789
Alignment:
Q  111 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 161  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20826739 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20826789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 34829446 - 34829539
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct 99  Q
    ||||||||| |||| ||| ||| ||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||| |||||  |||||||    
T  34829446 gaagcaaag-ttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggttggggttct 34829539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 28890058 - 28889978
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28890058 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28889978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 28896762 - 28896682
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28896762 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28896682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 28910010 - 28909930
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28910010 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28909930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 28931702 - 28931622
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28931702 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 28946405 - 28946325
Alignment:
Q  37 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28946405 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28946325  T

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Target: scaffold0090 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 17538 - 17643
Alignment:
Q  14 attcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||| |||| ||||||| ||||||||||||||||||||||  | | | || |||||||||||||||||||||| || ||||||  ||||||| |  |||    
T  17538 attcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagaaagtttgggtttcgctcgctcacagtt 17637  T
Q  114 cgcttg 119  Q
    ||||||    
T  17638 cgcttg 17643  T

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Target: scaffold0020 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 102601 - 102489
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    ||||||||| ||| |||||||| ||| ||||||||||||||  | | |||| |||||||||||| ||||||||| ||  |||||| ||||||| | ||||    
T  102601 ttcaaaaagtggccgactaagg-tcatcttcgcttaagcgatggctggttcgcttaagcgaccgacttacagaaagttggggttccgctcgctgacggtt 102503  T
Q  114 cgcttgagcgaact 127  Q
    ||||||||||||||    
T  102502 cgcttgagcgaact 102489  T

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Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 15667 - 15521
Alignment:
Q  19 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    ||||| |||||||||||| ||| ||||||||||||||| | | |||| |||||||||||| |||| |||  || ||||||  | ||||| | ||||||||    
T  15667 aaaagtggctgactaagg-tcatcttcgcttaagcgacggttggttcgcttaagcgaccgtcttatagagagtttgggtttcgttcgctaacggttcgct 15569  T
Q  118 tgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttct 165  Q
    ||||||||||||| ||| |||  ||| | ||||||||| || ||||||    
T  15568 tgagcgaacttctgacataatggaaatgatttttcgcttacgggttct 15521  T

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Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 80174 - 80072
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 114  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  80174 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 80075  T
Q  115 gct 117  Q
    |||    
T  80074 gct 80072  T

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Target: scaffold0053; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 81906 - 81826
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 86  Q
    |||||||| |||||||||| ||||||||||| |  |||||||||||||||| | | | || |||||||||||| ||||||||    
T  81906 gaagcaaa-attcaaaaagtggctgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacaga 81826  T

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Target: scaffold0317 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 728 - 799
Alignment:
Q  15 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 86  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  728 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 799  T

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Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 65476 - 65592
Alignment:
Q  14 attcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 113  Q
    |||||||||| ||||||||||||    || |||||||| ||| | | |||| |||||||||||||||||||||  ||  |||||| ||||||| | ||||    
T  65476 attcaaaaagtggctgactaaggtcttctccgcttaagtgacggctggttcgcttaagcgaccggcttacagagagttggggttccgctcgctaacggtt 65575  T
Q  114 cgcttgagcgaacttct 130  Q
    || || |||||||||||    
T  65576 cggttaagcgaacttct 65592  T

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Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 91890 - 91783
Alignment:
Q  11 aagattca-aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttag 109  Q
    |||||||| |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||||||     
T  91890 aagattcagaaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttac 91791  T
Q  110 ggttcgct 117  Q
    || |||||    
T  91790 gggtcgct 91783  T

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Target: scaffold0029; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 97616 - 97509
Alignment:
Q  11 aagattca-aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttag 109  Q
    |||||||| |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||||||     
T  97616 aagattcagaaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttac 97517  T
Q  110 ggttcgct 117  Q
    || |||||    
T  97516 gggtcgct 97509  T

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Target: scaffold0029; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 111330 - 111378
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  111330 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 111378  T

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Target: scaffold0261 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 24262 - 24178
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 90  Q
    ||||||||| |||| |||||| ||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||| ||| |||||    
T  24262 gaagcaaag-ttcagaaagagactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgaccagctcacaaaaggt 24178  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 18060 - 18121
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 76  Q
    |||| ||| ||||||||||||||||| ||||||||||||| || ||| || |||||||||||    
T  18060 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaaaggtagctcgcttaagcgacc 18121  T

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Target: scaffold0138 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 1181 - 1261
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 86  Q
    |||||||| |||||||||| ||||||||||| | | ||||||||||||||| | | | || ||||||||||||||| |||||    
T  1181 gaagcaaa-attcaaaaagtggctgactaagaccctcttcgcttaagcgacggctggctcgcttaagcgaccggctcacaga 1261  T

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Target: scaffold0720 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 3943 - 3831
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct-gctcgcttagggtt 113  Q
    |||||||| ||||||||||| ||||| |||||||||||||  | ||| || ||||||||||| ||| ||| || ||   ||| || ||||||| | ||||    
T  3943 ttcaaaaaaaggctgactaatgctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaagttgaggtcctcgctcgctcacggtt 3844  T
Q  114 cgcttgagcgaac 126  Q
    |||||||||||||    
T  3843 cgcttgagcgaac 3831  T

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Target: scaffold0483 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 11701 - 11631
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 76  Q
    ||||||||| |||| | |||||||||||||||||||  ||||||||||||  | |||||| |||||||||||    
T  11701 gaagcaaag-ttcagatagaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgacc 11631  T

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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 72645 - 72747
Alignment:
Q  5 gaagcaaagattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcg 104  Q
    |||||||| ||||| |||| ||||||||| ||||||  ||||||||||||  | ||| || ||||||||||| ||| ||| |||||  ||||| ||||||    
T  72645 gaagcaaaaattcagaaagtggctgacta-ggctcagctcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggttggggttttgctcg 72743  T
Q  105 ctta 108  Q
    ||||    
T  72744 ctta 72747  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 134867 - 134924
Alignment:
Q  60 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 117  Q
    ||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  134867 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 134924  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 493711 - 493650
Alignment:
Q  15 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 76  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  493711 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 493650  T

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Target: scaffold0924 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 1391 - 1343
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    |||||||||||||||||||   ||||||||||||  |||||||||||||    
T  1391 ggttcgcttgagcgaactttggacagaatcaaaattgtttttcgctcac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 49597 - 49645
Alignment:
Q  110 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 158  Q
    |||||| ||||||||||||   |||||||||||| ||||||||||||||    
T  49597 ggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 49645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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