View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_72 (Length: 334)
Name: NF8606A_low_72
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_72 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 323
Target Start/End: Complemental strand, 386281 - 385963
Alignment:
| Q |
5 |
cactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaacttttgcagc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
386281 |
cactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatgaaatcaacttttgcagc |
386182 |
T |
|
| Q |
105 |
ggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgcatgactcaaacaactgtcggattataaaattatttgttctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386181 |
ggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgcatgactcaaacaactgtcggattataaaattatttgttctg |
386082 |
T |
|
| Q |
205 |
atacctgacgaacccatgaaacgcagccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386081 |
atacctgacgaacccatgaaacgcagccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacag |
385982 |
T |
|
| Q |
305 |
aatatcccatggtcttcat |
323 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
385981 |
aatatcccatcgtcttcat |
385963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 38729261 - 38729579
Alignment:
| Q |
5 |
cactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaacttttgcagc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38729261 |
cactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagtatcaaatcaacttttgcagc |
38729360 |
T |
|
| Q |
105 |
ggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgcatgactcaaacaactgtcggattataaaattatttgttctg |
204 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
38729361 |
ggagttcacatatgtttcaagaagaggcttggctgattcgtatatcccatttttcatgcacgactcaaacaactgcctgattataaaattattggttctg |
38729460 |
T |
|
| Q |
205 |
atacctgacgaacccatgaaacgcagccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacag |
304 |
Q |
| |
|
|| ||||| |||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38729461 |
atccctgaggaacccatgaaacgtagccatctcaaagcaagatcgactgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacag |
38729560 |
T |
|
| Q |
305 |
aatatcccatggtcttcat |
323 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
38729561 |
aatatcccattgtcttcat |
38729579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University