View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_75 (Length: 333)
Name: NF8606A_low_75
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 41705734 - 41705403
Alignment:
| Q |
1 |
gaaccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatggg |
100 |
Q |
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| T |
41705734 |
gaaccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatggg |
41705635 |
T |
|
| Q |
101 |
agttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705634 |
agttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgt |
41705535 |
T |
|
| Q |
201 |
gcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggagagaatgtaatcggagcctggt |
300 |
Q |
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| T |
41705534 |
gcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggagagagtgtaatcggagcctggt |
41705435 |
T |
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| Q |
301 |
gagagtgggagagagagttggttgtggtggtg |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41705434 |
gagagtgggagagagagttggttgtggtggtg |
41705403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
174 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
254 |
Q |
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||||||||| ||||| | ||| |||| || ||||||||||||||||| || ||||||||||||||||| |||||| |||| |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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