View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_78 (Length: 332)
Name: NF8606A_low_78
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 58 - 320
Target Start/End: Original strand, 33067088 - 33067350
Alignment:
| Q |
58 |
ctatggatctgtctaatctaattccattatcaaacagttgtaggttcaatacaaagctttggagtttgaacttgaatctgttgaacctgtaaacttctca |
157 |
Q |
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| T |
33067088 |
ctatggatctgtctaatctaattccattatcaaacagttgtaggttcaatacaaagctttggagtttgaacttgaatctgttgaacctgtaaacttctca |
33067187 |
T |
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| Q |
158 |
atggagccaaacttgaacctgatcttcttttccaaagactattctcacttttgtttccttcttccaacttattcaccctcttgatcacaggtaaaggagg |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067188 |
atggagccaaacttgaacctgatcttcttttccaaagactattctcacttttgtttccttcttccaacttattcaccctcttgatcacaggtaaaggagg |
33067287 |
T |
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| Q |
258 |
atccatttcatcaatttttataccaacaacaacattctcattcctactacacctttcaatatt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33067288 |
atccatttcatcaatttttataccaacaacaacattctcattcctaatacacctttcaatatt |
33067350 |
T |
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