View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_79 (Length: 331)
Name: NF8606A_low_79
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 4160261 - 4159944
Alignment:
| Q |
9 |
gatatgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaa |
108 |
Q |
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| T |
4160261 |
gatatgaacatgtccccaccaacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacaagtcaacttaggaa |
4160162 |
T |
|
| Q |
109 |
atgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4160161 |
atgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctttcattgccaa |
4160062 |
T |
|
| Q |
209 |
attaatcatttttgaatcaatagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgaca |
308 |
Q |
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| T |
4160061 |
attaatcattttggaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgaca |
4159962 |
T |
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| Q |
309 |
gtaaatagagtgagatct |
326 |
Q |
| |
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| T |
4159961 |
gcaaatagagtgagatct |
4159944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 4171741 - 4172034
Alignment:
| Q |
9 |
gatatgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaa |
108 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
4171741 |
gatatgaacatgtccccaccgacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacatctcaacttaggat |
4171840 |
T |
|
| Q |
109 |
atgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaa |
208 |
Q |
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| T |
4171841 |
atgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaa |
4171940 |
T |
|
| Q |
209 |
attaatcatttttgaatcaatagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaa |
302 |
Q |
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| T |
4171941 |
attaatcattttggaatcactagccatagcatcattgaacaatctattatattcaggatttttgttaagaaactcccataaatcacatcctaaa |
4172034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 4177368 - 4177641
Alignment:
| Q |
13 |
tgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgt |
112 |
Q |
| |
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|||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||| | ||| | |||||| |||| |||||||||||||| ||| || |
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| T |
4177368 |
tgaacatgtccccaccaacataagtcaaattattgcttccagataagttctctacaacttgtggcctatcaaacacaatacatttcaacttaggaaaagt |
4177467 |
T |
|
| Q |
113 |
ctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatta |
212 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||| |||||| || |
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| T |
4177468 |
ctcacaaataattttaccagtggttccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatctctcaatgccaagttt |
4177567 |
T |
|
| Q |
213 |
atcatttttgaatcaatagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactccca |
286 |
Q |
| |
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|||| ||| |||||| |||||| |||||||| || || ||||||| ||||| ||||| | |||||| ||||| |
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| T |
4177568 |
atcaatttagaatcactagccattgcatcattaaatgatctattatattcaggatttttatcaagaaaatccca |
4177641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 34343695 - 34343525
Alignment:
| Q |
64 |
ctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
163 |
Q |
| |
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||||||||| |||| ||||| ||||||||||||||||||||| ||| | |||||| ||||| || | || |||||| |||||||||||||||||||||| |
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| T |
34343695 |
ctacaacctgtggaagatcataaacaacacatttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaat |
34343596 |
T |
|
| Q |
164 |
tgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcaatagcca |
234 |
Q |
| |
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|| || | ||| ||||||||| | |||||| ||||| |||||||| | ||||| |||||| |||||| |
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| T |
34343595 |
agaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccatttgagaatcactagcca |
34343525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 34331071 - 34330971
Alignment:
| Q |
81 |
tcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaa |
180 |
Q |
| |
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|||||||||| |||||| | ||||| ||| | |||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
34331071 |
tcaaaaacaagacatttgaccttaggaaaagcctcacatataattttagccgtcgttccatttccaccaccaacatccacaatagattctatcccctcaa |
34330972 |
T |
|
| Q |
181 |
a |
181 |
Q |
| |
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| |
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| T |
34330971 |
a |
34330971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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