View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_89 (Length: 314)
Name: NF8606A_low_89
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 23915429 - 23915210
Alignment:
| Q |
6 |
agaaatgaaaacgatatgcatgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggt |
105 |
Q |
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| T |
23915429 |
agaaatgaaaacgatatgcatg----agtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggt |
23915334 |
T |
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| Q |
106 |
gaatgaatttctttctgactacattcattgacttattttgactgagtgaagtccttnnnnnnnnggtactgcatcataatgcctataaattaagaaccct |
205 |
Q |
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| T |
23915333 |
gaatgaatttctttctgactacattcattgacttattttgactgagtgaagtccttaaaaaaaaggtactgcattataatgcctataaattaagaaccc- |
23915235 |
T |
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| Q |
206 |
aagtaacgtctcttcttcattctcctca |
233 |
Q |
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|||||||| |||| ||||||||||| |
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| T |
23915234 |
---taacgtctattctccattctcctca |
23915210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 23915185 - 23915125
Alignment:
| Q |
235 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
295 |
Q |
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| T |
23915185 |
aagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttat |
23915125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 23922834 - 23922776
Alignment:
| Q |
235 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatcttt |
293 |
Q |
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| T |
23922834 |
aagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatcttt |
23922776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 23922935 - 23922872
Alignment:
| Q |
170 |
ggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttcattctcctca |
233 |
Q |
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| T |
23922935 |
ggtactacattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctca |
23922872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 23923022 - 23922954
Alignment:
| Q |
83 |
aaaaaaccaagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgag |
151 |
Q |
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||||||||||||||||||||||||| | |||| |||||||||||||||||| ||| ||||||| |||| |
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| T |
23923022 |
aaaaaaccaagaatattaatggtgactttatttgtttctgactacattcattaactcattttgattgag |
23922954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 25803278 - 25803226
Alignment:
| Q |
243 |
atggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
295 |
Q |
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| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttat |
25803226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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