View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_low_9 (Length: 462)
Name: NF8606A_low_9
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Complemental strand, 46953624 - 46953167
Alignment:
| Q |
12 |
aagaattgtttgtcgaatcctgtttcacgaatacgacatctacgtgtagtccccatccaaatccaaactataaacatgaaacttccaaaacgtaccaaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46953624 |
aagaattgtttgtcgaatcctgtttcacaaatacgacatctatgtgtagtccccatccaaatccaaactataaacatgaaacttccaaaacgtaccaaag |
46953525 |
T |
|
| Q |
112 |
aaagtatcaaactcttcttaccaaataactccctataaatacattcatttctctatcatattctatcaatacgcctaaactcctagaacc-------gac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46953524 |
aaagtatcaaactcttcttaccaaataactccctataaatacattcatttctctatcatattctatcaatacgcctaaactcctagaacctagaaccgac |
46953425 |
T |
|
| Q |
205 |
attatagtatttcatatcttcnnnnnnnngtatttcattcaattatttgtgacataaggtaaaagaaaatcaagaaggaatgggcaatcccctgcaactc |
304 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46953424 |
attatagtatttcatatcttcaaaaaaaagtatttcattcaattatttgtgacataaggtaaaagaaaatcaagaaggaatgggcaatcccctgcaactc |
46953325 |
T |
|
| Q |
305 |
aaatcattgaatcacatctcattggtgtgtagatcattagacaagcctgttgatttttacgtcaatgttcttggcttctttcctattaagaggcctacct |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46953324 |
aaatcattgaatcacatctcattggtgtgtagatcattagacaagtcagttgatttttacgtcaatgttcttggcttctttcctattaagaggcctacct |
46953225 |
T |
|
| Q |
405 |
ccttagccttcaatggtgcatggtacgtatatttcatcattttatgatacacttttga |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46953224 |
ccttagccttcaatggtgcatggtacgtatatttaatcattttatgatacacttttga |
46953167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University