View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606_low_3 (Length: 400)

Name: NF8606_low_3
Description: NF8606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606_low_3
NF8606_low_3
[»] chr4 (1 HSPs)
chr4 (103-400)||(40660153-40660450)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 103 - 400
Target Start/End: Complemental strand, 40660450 - 40660153
Alignment:
Q  103 aaggtttatggtgcaccgcaccgcatctagttctaacatgggtggagctatggtttcattgttctccagcttcttcgaccctccataatgataagtttcc 202  Q
    ||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||     
T  40660450 aaggtttatggtgtaccgcactgcaactagttctaacatggatggagctatggtttcatcgttctccagcttcttcgaccctccattatgataagtttct 40660351  T
Q  203 aatctagctttgacgcttgcaattgtgtgttgtttgatctccggagcatgacaattggcttatgccaatgatcaatcaaattgtgtttgatactaattgg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40660350 aatctagctttgacgcttgcaattgtgtgttgtttgatctccggagcatgacaattggcttatgccaatgatcaatcaaattgtgtttgatactaattgg 40660251  T
Q  303 ttactttttggtttaataaatgggattctatagaggatactaaaatcataagattatatggaccctactccaagtacatcactgctgcaggatttaaa 400  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40660250 ttactttttggtttaataaatgggattctatggaggatactaaaatcataagattatatggaccctactccaagtacatcactgctgcaggatttaaa 40660153  T

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