View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606_low_5 (Length: 293)
Name: NF8606_low_5
Description: NF8606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 81 - 278
Target Start/End: Complemental strand, 45521467 - 45521270
Alignment:
| Q |
81 |
taactattaaggtattttgggtttgatgatgaaacattaatgacatctccttccccatttctccgataataacatttatggttgcatccacttccccact |
180 |
Q |
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| T |
45521467 |
taactattaaggtattttgggtttgatgatgaaacattaacgacatctccttccccatttctccaataatagcatctatggttgcatccacttccccaat |
45521368 |
T |
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| Q |
181 |
actcttgcacgnnnnnnncctgacagaactcaatactctcttctttttcggacaataaagtttaannnnnnnngtggcttttaatttttgtgattaat |
278 |
Q |
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| T |
45521367 |
actcttgcacgtttttttcctgacagatctcaatactctcttctttttcggacaataaagtttaattttttttgttgcttttaatttctgtgattaat |
45521270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 10567007 - 10566829
Alignment:
| Q |
68 |
cttcttcctatattaactattaaggtattttgggtttgatgatgaaacattaatgacatctccttccccatttctccgataataacatttatggttgcat |
167 |
Q |
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| T |
10567007 |
cttcttcatatattaactattagggtattttgggtttgatgatgaaacattaacgacatctccttccccatttctccaataatagcatctatggttgcat |
10566908 |
T |
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| Q |
168 |
ccacttccccactactcttgcacg-nnnnnnncctgacagaactcaatactctcttctttttcggacaataaagtttaa |
245 |
Q |
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| T |
10566907 |
ccacttccccaatactcttgcacgttttttttcatgacagatctcaatactctcttctttttcggacaataaagtttaa |
10566829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 52727735 - 52727820
Alignment:
| Q |
97 |
ttgggtttgatgatgaaacattaatgacatctccttccccatttctccgataataacatttatggttgcatccacttccccactact |
183 |
Q |
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| T |
52727735 |
ttgggtttaatggtgaaacgttaatgacatctccttttccatttctcc-agcatagcatctatggttgcatccacttccccaatact |
52727820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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