View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8607_high_1 (Length: 527)
Name: NF8607_high_1
Description: NF8607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8607_high_1 |
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| [»] scaffold0338 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 13123336 - 13123513
Alignment:
| Q |
339 |
gagtctagttaggctctgatttgggagtgtcggaacttttgttttatgtcatttatttgtttatggatttatctgctgagactattattatgtatgtgat |
438 |
Q |
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| T |
13123336 |
gagtctagttaggctctgatatgggagtgtcgggacttttgttttatgtcgtttatttgtttatggatttatctgctgagactattattatgtatgtg-- |
13123433 |
T |
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| Q |
439 |
cagacctaattatgtatgatgattattctgctgcaagttttatgaaaaccaacttatgcataatttgagaatatgatgatg |
519 |
Q |
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| T |
13123434 |
-agacctaattatgtatgatgatttttccgctgcaagtataatgaaaaccaatttatgcatgttttgagaatatgatgatg |
13123513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 13115497 - 13115604
Alignment:
| Q |
139 |
tagatacgaataattcaatcatgtccttaggagccatcaagtagttcaaccaatttataggcatggaaggatatattgcaaagccacatattctatctca |
238 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
13115497 |
tagatacgaataattcaatcttgtccttgggagccatcaagtagttcaaccaatttataggcatggaaggatatattgcaaagccacatat--tttctca |
13115594 |
T |
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| Q |
239 |
aatgtggatg |
248 |
Q |
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|||||||||| |
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| T |
13115595 |
aatgtggatg |
13115604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 13123295 - 13123339
Alignment:
| Q |
278 |
attgatttcttattgcttgtgagggcttgaggattaacttggagt |
322 |
Q |
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| T |
13123295 |
attgatttcttattgcttgtgagtgcttgaggattaacttggagt |
13123339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 20891733 - 20891677
Alignment:
| Q |
277 |
gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctcttatc |
333 |
Q |
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| T |
20891733 |
gattgatttcttattgcttgtgagtactcgaggactagcttggagctacctcttatc |
20891677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 388095 - 387995
Alignment:
| Q |
1 |
gaagatggctacggcttctttgatgtagctgacaggacgagaggggtccacgggggagctataatcagctgtaggggtcaccggtataggttgatgatcc |
100 |
Q |
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||||||||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||||| ||| ||| |
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| T |
388095 |
gaagatggctacggcttctttgacggagctgaaaggacgagaggtgtccacggtggagctataatcagcggtaggggtcaccgacataggttcatgttcc |
387996 |
T |
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| Q |
101 |
a |
101 |
Q |
| |
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| |
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| T |
387995 |
a |
387995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 16592321 - 16592382
Alignment:
| Q |
276 |
ggattgatttcttattgcttgtgagggcttgaggattaacttggagttacct-cttatcttt |
336 |
Q |
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||||||| ||||||||||| ||||| |||||||| |||| |||||| ||||| ||||||||| |
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| T |
16592321 |
ggattgagttcttattgctagtgagtgcttgagggttaatttggagctacctccttatcttt |
16592382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0338
Description:
Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 18667 - 18720
Alignment:
| Q |
277 |
gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctctt |
330 |
Q |
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|||||| |||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
18667 |
gattgagttcttatttcttgtgagtgcttgaggattagcttggagttacctctt |
18720 |
T |
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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 71415 - 71468
Alignment:
| Q |
284 |
ttcttattgcttgtgagggcttgaggattaacttggagttacct-cttatcttt |
336 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||| |
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| T |
71415 |
ttcttattgcttgtgagtgcttgaggattagcttggagctacctccttatcttt |
71468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 15062000 - 15061947
Alignment:
| Q |
277 |
gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctctt |
330 |
Q |
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|||||| ||| ||||||||||||| |||||||||||| ||||||| |||||||| |
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| T |
15062000 |
gattgagttcctattgcttgtgagtgcttgaggattagcttggagctacctctt |
15061947 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 520
Target Start/End: Original strand, 24474409 - 24474453
Alignment:
| Q |
476 |
ttttatgaaaaccaacttatgcataatttgagaatatgatgatgt |
520 |
Q |
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||||||||||||||| |||||||||||||||||| |||| ||||| |
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| T |
24474409 |
ttttatgaaaaccaatttatgcataatttgagaaaatgaagatgt |
24474453 |
T |
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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 2770 - 2732
Alignment:
| Q |
339 |
gagtctagttaggctctgatttgggagtgtcggaacttt |
377 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |
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| T |
2770 |
gagtctagttaggctctgatttaggagtgtcgggacttt |
2732 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 433
Target Start/End: Complemental strand, 2278379 - 2278284
Alignment:
| Q |
339 |
gagtctagttaggctctgatttgggagtgtcggaact---tttgttttatgtcatttatttgtttatggatttatctgctgagactattattatgtat |
433 |
Q |
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|
|||||||||||||||||||||| |||||||| | ||| ||| |||| |||| ||||| || | ||||||||| |||||||||||| | ||||||| |
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|
| T |
2278379 |
gagtctagttaggctctgatttaggagtgtcaggactttgtttcttttgtgtcttttatctgatgatggattta--tgctgagactatgactatgtat |
2278284 |
T |
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