View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8607_low_1 (Length: 552)
Name: NF8607_low_1
Description: NF8607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8607_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Complemental strand, 2904747 - 2904220
Alignment:
| Q |
13 |
gataattctagctcattgttaccaaaaacagccgccaaatccaacgccccactgaaagttaatctaatatagactgtcccagctccacaaggatccagcc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2904747 |
gataattctagctcattgttaccaaaaacagccgccaaatccaacgccccactgaaagttaatctaatatagactgtcccagctccacaaggatccagcc |
2904648 |
T |
|
| Q |
113 |
gtaatcaaacatcttcaccactacgttacagagatatacaaaaacagttagtcgctaactagatgaatcaatctccaaaacaatcatcccaaccatgcta |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2904647 |
gtaatcaaacatcttcaccactacgttacagagatatacaaaaccagttagtcgctaactagatgaatcaatctccaaaacaatcatcccaaccatgcta |
2904548 |
T |
|
| Q |
213 |
aaatattagaaattgaaaatgttattttatgcgcaacaagaatccaaatgtatacaaaaaatagatacatac----atacctactatccaagtgaggagt |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2904547 |
aaatattagaaattgaaaatgttattttatgcgcaacaagaatccaaatgtatacaaaaaatagatacatacatacatacctactatccaagtgaggagt |
2904448 |
T |
|
| Q |
309 |
gtaagtaacacaatcgacaacctatatccagatttgttaaccaaaataaatgaatctctacacagatactgcacaattctaaaccattgaaaccagtctg |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2904447 |
gtaagtaacacaatcgacaacctatatccagatttgttaaccaaaataaaggaatctctacacagatactgcacaattctaaaccattgaaaccagtctg |
2904348 |
T |
|
| Q |
409 |
aataaatctgaaacatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgt-nnnnnnnnnnnnnncagaaaaggcagtcctaa |
507 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2904347 |
aataaatctgaaccatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgtaaaaaaaaaaaaaaacagaaaaggcagtcctaa |
2904248 |
T |
|
| Q |
508 |
cttctagctagaccgattcattcaataa |
535 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
2904247 |
cttctagctagaccgattcattcaataa |
2904220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Complemental strand, 2852715 - 2852188
Alignment:
| Q |
13 |
gataattctagctcattgttaccaaaaacagccgccaaatccaacgccccactgaaagttaatctaatatagactgtcccagctccacaaggatccagcc |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2852715 |
gataattctagcacattgttaccaaaaacagccgccaaatccaacgccccactgaaaattaatctaatatagactgtcccagctccacaaggatccagcc |
2852616 |
T |
|
| Q |
113 |
gtaatcaaacatcttcaccactacgttacagagatatacaaaaacagttagtcgctaactagatgaatcaatctccaaaacaatcatcccaaccatgcta |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2852615 |
gtaatcaaacatcttcaccactacattacagaaatatacaaaaccagttagtcgctaaatagatgaatcaatctccaaaacaatcatcccaaccatgcta |
2852516 |
T |
|
| Q |
213 |
aaatattagaaattgaaaatgttattttatgcgcaacaagaatccaaatgtatacaaaaaatagatacatac----atacctactatccaagtgaggagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2852515 |
aaatattagaaattgaaaatgttattttatgcgcaacaagaatccaaatgtatacaaaaaatagatacatacatacatacctactatccaagtgaggagt |
2852416 |
T |
|
| Q |
309 |
gtaagtaacacaatcgacaacctatatccagatttgttaaccaaaataaatgaatctctacacagatactgcacaattctaaaccattgaaaccagtctg |
408 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2852415 |
gtaagtaacacaatagacaacctatatccagatttgttaaccaaaataaaggaatctctacacagatactgcacaattctaaaccattgaaaccagtctg |
2852316 |
T |
|
| Q |
409 |
aataaatctgaaacatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgt-nnnnnnnnnnnnnncagaaaaggcagtcctaa |
507 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2852315 |
aataaatctgaaccatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgtaaaaaaaaaaaaaaacagaaaaggcagtcctaa |
2852216 |
T |
|
| Q |
508 |
cttctagctagaccgattcattcaataa |
535 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
2852215 |
cttctagctagaccgattcattcaataa |
2852188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 188 - 475
Target Start/End: Complemental strand, 42950939 - 42950642
Alignment:
| Q |
188 |
caaaacaatcatcccaaccatgctaaaatattagaaattgaaaatgttattttatgcgcaacaagaatccaaatgtatacaaaaaatagatacatacata |
287 |
Q |
| |
|
||||||||| |||| | |||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42950939 |
caaaacaattatcctagccatactaaaatattagaaatggaaaaagttattttatgcgcaacaaaaatccaaatgtatacaaaaaatagatacatacata |
42950840 |
T |
|
| Q |
288 |
cctactatccaagtgaggagtgtaagtaacacaatcgacaacctatatccagatttgttaaccaaaataaatgaatctctacacagatactgcacaattc |
387 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42950839 |
cctactatccaagtgaggggtgtaagtaacacaaacgacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattc |
42950740 |
T |
|
| Q |
388 |
taaaccattgaa-----------accagtctgaataaatctgaaacatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgt |
475 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
42950739 |
taaaccattgaaaaatcattgacaccagtctgaataaatctgaaccattggcgaaaggcttcttctaagttataac-aagtctgaaaccatgaacttgt |
42950642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 42951082 - 42951034
Alignment:
| Q |
29 |
tgttaccaaaaacagccgccaaatccaacgccccactgaaagttaatct |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
42951082 |
tgttaccaaaaacagccgccaaatccaacgctccactgaaatttaatct |
42951034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 1179555 - 1179521
Alignment:
| Q |
206 |
catgctaaaatattagaaattgaaaatgttatttt |
240 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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|
| T |
1179555 |
catgctaaaatattagaaatggaaaatgttatttt |
1179521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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