View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8607_low_7 (Length: 242)
Name: NF8607_low_7
Description: NF8607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8607_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 48535833 - 48536067
Alignment:
| Q |
1 |
cagaaccagtgtgtagatctccatgtattagtgcctgagccctctcacagaacctgaatgaacataaattttcatcaacaaaaacccaaacaacaaaact |
100 |
Q |
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| T |
48535833 |
cagaaccagtgtgtagatctccatgtattagtgcctgagccctctcacagaacctgaatgaacataaattttcatcaacaaaaacccaaacaacaaaact |
48535932 |
T |
|
| Q |
101 |
actgcattaaaagaag-aagaaagtgagagtgtgagacatatataatactttgattttagctcagcaacttcaagcttcagtagattgtcttcccgaaca |
199 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48535933 |
actgcattaaaagaagaaaaaaagtgagagtgtgagacatatataatactttgattttagctcagcaacttcaagctttagtagattgtcttcccgaaca |
48536032 |
T |
|
| Q |
200 |
gcctcagcatcacggtcaagattaggtgatgtcca |
234 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
48536033 |
gcctcagcatcacggtcaagattaggtgaagtcca |
48536067 |
T |
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