View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8608_high_1 (Length: 812)

Name: NF8608_high_1
Description: NF8608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8608_high_1
NF8608_high_1
[»] chr3 (29 HSPs)
chr3 (158-458)||(27864832-27865132)
chr3 (158-458)||(24107184-24107485)
chr3 (160-458)||(19860493-19860790)
chr3 (197-458)||(3171491-3171753)
chr3 (158-458)||(38758610-38758910)
chr3 (179-459)||(54446021-54446297)
chr3 (192-437)||(18025918-18026163)
chr3 (163-343)||(14812465-14812646)
chr3 (384-458)||(24107153-24107228)
chr3 (384-458)||(27864801-27864876)
chr3 (158-213)||(27865046-27865101)
chr3 (385-458)||(31596747-31596821)
chr3 (160-213)||(19860526-19860579)
chr3 (384-458)||(38758866-38758941)
chr3 (384-449)||(21792228-21792294)
chr3 (349-458)||(46684100-46684209)
chr3 (391-458)||(16907932-16908000)
chr3 (158-206)||(24107406-24107454)
chr3 (159-206)||(21792251-21792298)
chr3 (158-215)||(3171522-3171580)
chr3 (158-215)||(38758641-38758699)
chr3 (384-440)||(21792376-21792432)
chr3 (295-458)||(46685437-46685599)
chr3 (384-457)||(54446274-54446349)
chr3 (385-438)||(14812450-14812503)
chr3 (158-206)||(18026106-18026154)
chr3 (400-458)||(18025882-18025941)
chr3 (414-458)||(11422381-11422426)
chr3 (158-234)||(21792343-21792420)
[»] chr5 (25 HSPs)
chr5 (158-457)||(5840880-5841180)
chr5 (158-458)||(23322100-23322401)
chr5 (192-458)||(15933358-15933625)
chr5 (258-457)||(25088924-25089123)
chr5 (258-457)||(25146893-25147092)
chr5 (158-255)||(25088437-25088534)
chr5 (158-255)||(25146406-25146503)
chr5 (384-458)||(23322357-23322432)
chr5 (215-377)||(42793592-42793752)
chr5 (377-458)||(34634070-34634152)
chr5 (158-238)||(34634101-34634181)
chr5 (384-458)||(5841136-5841211)
chr5 (390-458)||(9379932-9380001)
chr5 (375-458)||(43183232-43183316)
chr5 (384-458)||(42792950-42793025)
chr5 (158-206)||(15933389-15933437)
chr5 (158-206)||(23322131-23322179)
chr5 (158-239)||(9379963-9380044)
chr5 (158-239)||(9380675-9380756)
chr5 (384-437)||(25088428-25088481)
chr5 (384-437)||(25146397-25146450)
chr5 (158-218)||(42792981-42793041)
chr5 (160-239)||(1501053-1501132)
chr5 (400-458)||(15933602-15933661)
chr5 (390-440)||(9380718-9380768)
[»] chr4 (42 HSPs)
chr4 (158-458)||(10468482-10468783)
chr4 (158-458)||(12585160-12585461)
chr4 (158-456)||(52677585-52677884)
chr4 (158-438)||(16067357-16067637)
chr4 (160-456)||(49028267-49028564)
chr4 (179-457)||(21038168-21038445)
chr4 (158-399)||(3990738-3990978)
chr4 (160-406)||(9268058-9268304)
chr4 (178-458)||(622110-622391)
chr4 (259-458)||(10286412-10286611)
chr4 (288-459)||(36098746-36098917)
chr4 (384-456)||(21038119-21038191)
chr4 (158-244)||(45667264-45667350)
chr4 (382-458)||(45667233-45667310)
chr4 (377-458)||(52677554-52677636)
chr4 (158-206)||(16067579-16067627)
chr4 (384-458)||(3990934-3991009)
chr4 (384-458)||(9268025-9268100)
chr4 (384-458)||(10468739-10468814)
chr4 (384-439)||(16067346-16067401)
chr4 (390-458)||(9450923-9450992)
chr4 (385-457)||(25225793-25225866)
chr4 (158-238)||(4437713-4437793)
chr4 (384-459)||(12585417-12585493)
chr4 (380-458)||(9449717-9449796)
chr4 (384-458)||(49028522-49028597)
chr4 (158-215)||(52677797-52677855)
chr4 (158-238)||(4438996-4439076)
chr4 (382-457)||(10202681-10202757)
chr4 (388-458)||(17931290-17931361)
chr4 (158-217)||(25225823-25225882)
chr4 (390-458)||(4437682-4437751)
chr4 (390-458)||(4439038-4439107)
chr4 (390-458)||(21325695-21325764)
chr4 (390-458)||(28450752-28450821)
chr4 (158-239)||(28451498-28451579)
chr4 (158-202)||(10286443-10286487)
chr4 (158-202)||(12585191-12585235)
chr4 (158-206)||(49028296-49028344)
chr4 (388-458)||(17932138-17932209)
chr4 (384-442)||(622077-622134)
chr4 (390-458)||(28451541-28451610)
[»] chr6 (9 HSPs)
chr6 (158-458)||(3658954-3659254)
chr6 (158-422)||(5367454-5367718)
chr6 (179-440)||(28944266-28944531)
chr6 (384-458)||(5367674-5367748)
chr6 (295-458)||(8286790-8286952)
chr6 (384-458)||(3659211-3659285)
chr6 (349-458)||(8287390-8287499)
chr6 (161-213)||(5367451-5367504)
chr6 (158-209)||(28944278-28944329)
[»] chr7 (11 HSPs)
chr7 (158-459)||(8905673-8905974)
chr7 (162-458)||(4264978-4265275)
chr7 (380-458)||(8905642-8905721)
chr7 (377-458)||(4265228-4265310)
chr7 (390-458)||(8329046-8329114)
chr7 (157-237)||(18471730-18471810)
chr7 (391-458)||(25749396-25749464)
chr7 (384-458)||(25749314-25749388)
chr7 (160-205)||(4265011-4265056)
chr7 (158-239)||(18470172-18470253)
chr7 (158-195)||(25749396-25749433)
[»] chr2 (18 HSPs)
chr2 (158-458)||(42962801-42963102)
chr2 (160-456)||(38694892-38695189)
chr2 (214-458)||(18171165-18171414)
chr2 (384-458)||(38695147-38695222)
chr2 (158-216)||(18166666-18166724)
chr2 (158-204)||(42963025-42963071)
chr2 (390-458)||(14159208-14159277)
chr2 (390-458)||(14160421-14160490)
chr2 (384-458)||(18166635-18166710)
chr2 (384-458)||(4410634-4410709)
chr2 (158-209)||(18171332-18171383)
chr2 (158-239)||(4409193-4409274)
chr2 (390-458)||(4733306-4733375)
chr2 (390-458)||(4734217-4734286)
chr2 (158-206)||(38694921-38694969)
chr2 (158-237)||(4410599-4410678)
chr2 (158-239)||(4733337-4733418)
chr2 (158-239)||(4734174-4734255)
[»] scaffold0069 (2 HSPs)
scaffold0069 (158-458)||(19928-20232)
scaffold0069 (384-460)||(19895-19972)
[»] scaffold0006 (3 HSPs)
scaffold0006 (158-438)||(93664-93944)
scaffold0006 (385-458)||(93634-93707)
scaffold0006 (158-209)||(93883-93934)
[»] chr8 (12 HSPs)
chr8 (215-458)||(18202775-18203019)
chr8 (256-459)||(30905858-30906061)
chr8 (385-458)||(18203316-18203390)
chr8 (158-206)||(30905981-30906029)
chr8 (384-458)||(30905398-30905473)
chr8 (389-458)||(32539449-32539519)
chr8 (390-458)||(10536002-10536071)
chr8 (158-239)||(10536033-10536114)
chr8 (390-458)||(10536792-10536861)
chr8 (158-209)||(18202806-18202857)
chr8 (158-237)||(32539409-32539488)
chr8 (344-441)||(29275265-29275362)
[»] scaffold0008 (2 HSPs)
scaffold0008 (158-449)||(266632-266923)
scaffold0008 (384-457)||(266879-266953)
[»] chr1 (12 HSPs)
chr1 (158-459)||(37499177-37499475)
chr1 (382-458)||(30335229-30335305)
chr1 (390-458)||(9114821-9114890)
chr1 (390-458)||(14903808-14903877)
chr1 (319-378)||(30335123-30335181)
chr1 (158-239)||(9114852-9114933)
chr1 (390-458)||(14904596-14904665)
chr1 (390-458)||(17690936-17691005)
chr1 (389-459)||(17689737-17689807)
chr1 (392-438)||(9116064-9116110)
chr1 (164-202)||(30335231-30335269)
chr1 (385-439)||(37499432-37499486)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 158 - 458
Target Start/End: Original strand, 27864832 - 27865132
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg-c 256  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||| | | |||||||| |    
T  27864832 tgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttagtatttgttagccaaataaatcctcactgtcagtcttttgcc 27864931  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||| |||| ||||||||    
T  27864932 aaaacgttaactaggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagtcattgggttaacggttttgacgg-tggggatttattt 27865030  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  27865031 ggttgacggaagatgacttaaa-ggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaatt 27865129  T
Q  456 aag 458  Q
    |||    
T  27865130 aag 27865132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 158 - 458
Target Start/End: Original strand, 24107184 - 24107485
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||||  |||||||||| | |||||| ||||||||||||||||| | |||||||||     
T  24107184 tgttggttacattttggtcccataagttattaacgttacaatttggtcacttaagttagtttctgttagccaaataaatcctcaccgtcagtcttttgcc 24107283  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | | || ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||    
T  24107284 aaaacgttaaataggcacatgtgaacggcgaagtgacaacttgcaatgtgtatcctccttagacattggcttaacggttttgacggt-gggaatttattt 24107382  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    |||| | ||||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||    
T  24107383 ggttaacggaagatgacttaacgggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaattaacttaatggaccacatcattaatt 24107482  T
Q  456 aag 458  Q
    |||    
T  24107483 aag 24107485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 160 - 458
Target Start/End: Complemental strand, 19860790 - 19860493
Alignment:
Q  160 ttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aa 258  Q
    ||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||  || | |||| ||||||||||||||||| | ||||||||| ||    
T  19860790 ttggttacattttggtctca-aagttattaacattacaatttggtcctttaagttaaaatctattagccaaataaatcctcaccgtcagtcttttgccaa 19860692  T
Q  259 aacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttgg 358  Q
    |||||||||||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||| | ||| ||||||||    
T  19860691 aacgttaaataggcacatgtgaacggtgacgtgacaacttgcgatgtgtatccaatttagacattggcttaacggttttgacggtggagaa-ttatttgg 19860593  T
Q  359 ttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaa 457  Q
    |||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||  ||||||||||||||||||    
T  19860592 ttgacggaagatcacttaaa-ggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaataaataacttaatagaccacatcattaattaa 19860494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 197 - 458
Target Start/End: Complemental strand, 3171753 - 3171491
Alignment:
Q  197 aatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aaaacgttaaataggcacatgtgatctgtgacgtgacaa 295  Q
    |||||||||| |||||||||||| |||| | ||||||||||||||||| |  |||||||| ||||||||||||| |||||||||| |  |||||||||||    
T  3171753 aatttggtcccttaagttagtatctgttggccaaataaatcctcaccgtcattcttttgccaaaacgttaaataagcacatgtgaacaatgacgtgacaa 3171654  T
Q  296 cttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaattgtaacg 395  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||| | ||||||||||| ||||||| ||||||| ||| |||||||||||     
T  3171653 cttgcagtgtgtatccaccttagacattggattaacggttttgacggtgggga-tgtatttggttgacggaagataacttaaagggaccaaattgtaaca 3171555  T
Q  396 ttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  3171554 ttaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaag 3171491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 158 - 458
Target Start/End: Complemental strand, 38758910 - 38758610
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||| | ||||||||||||||||| |||||||||| ||||     | |||||||     
T  38758910 tgttggttacattttggtcccataagttatcaacgttataatttggtccct-aagttagtatatgttagccaaataaatcttcacttttagccttttgcc 38758812  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    ||||||||||||||| |||||||| | | || ||||||||||||||||||||||||| ||||||||||| ||||||||||| || || || |||||||||    
T  38758811 aaaacgttaaataggaacatgtgaacggcgatgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttgacagt-ggaaatttattt 38758713  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    ||| || ||||||| ||||||| |||  ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||| |||||    
T  38758712 ggtagagggaagataacttaaagggactaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggacaacatcactaatt 38758613  T
Q  456 aag 458  Q
    |||    
T  38758612 aag 38758610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 179 - 459
Target Start/End: Complemental strand, 54446297 - 54446021
Alignment:
Q  179 ataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aaaacgttaaataggcacatg 277  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||  | |  |||||||| ||||||||||||| |||  ||    
T  54446297 ataagttattaacattacaatttggtcttttaagttagtatatgttagccaaataaatcctcattgtcattcttttgccaaaacgttaaatatgcatgtg 54446198  T
Q  278 tgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaa 377  Q
    ||| | |||||||||||||     |||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| |||| ||||||||||||||    
T  54446197 tgaacggtgacgtgacaac-----atgtgtatccaccttagacattggcttaacggttttgacggt-gagaatttatttgtttgacggaagatgacttaa 54446104  T
Q  378 atggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaagt 459  Q
    | ||| |||||||||||||||||||||||| | | |||||||||||||||||||||||| || ||||||||||||||||||||    
T  54446103 agggaccaaattgtaacgttaataacttataggattaaaatgtaatcaacaaataactttagagaccacatcattaattaagt 54446021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 192 - 437
Target Start/End: Original strand, 18025918 - 18026163
Alignment:
Q  192 gttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aaaacgttaaataggcacatgtgatctgtgacgt 290  Q
    |||||| ||||||||  ||||||||||| |||||   |||||||||||||||| |  | |||||| ||||||||||||| | |||||||| | |||||||    
T  18025918 gttacattttggtcccataagttagtatttgttaactaaataaatcctcaccgtcaatattttgccaaaacgttaaataagaacatgtgaacggtgacgt 18026017  T
Q  291 gacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaattg 390  Q
    |||| |||||||||||||||||| ||||||||||| ||||||||||| |||| |||  ||||||||| ||||  ||||||| |||||| |||  |||| |    
T  18026018 gacagcttgcaatgtgtatccaccttagacattggattaacggttttgacgg-tggagatttatttgattgacagaagatggcttaaagggactaaatgg 18026116  T
Q  391 taacgttaataacttatggaactaaaatgtaatcaacaaataactta 437  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  18026117 taacgttaataacttatgggactaaaatgtaaccaacaaataactta 18026163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 14812465 - 14812646
Alignment:
Q  163 gttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aaaac 261  Q
    |||||||||| ||| |||||||||| |||||||||||||  ||| ||| |||||||| ||| || || |||||||||||| |   ||||||||| ||||     
T  14812465 gttacattttggtcccataagttattaacgttacaattttctcccttaggttagtatttgtgagccatataaatcctcacggttagtcttttgccaaaat 14812564  T
Q  262 gttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggt 343  Q
    | |||| |||||| ||||| | ||||||||||||||| ||||||||||| || |||||||||||| |||||||||| |||||    
T  14812565 gataaaaaggcacgtgtgaacggtgacgtgacaacttacaatgtgtatctaccttagacattggcctaacggttttgacggt 14812646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 24107228 - 24107153
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||| || |||||| |||||||||||||    
T  24107228 caaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataactcaagggaccaaatcattaattaag 24107153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 27864876 - 27864801
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactta-aggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||||||||||  |||||| |||||||||||||    
T  27864876 caaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttacgggaccaaatcattaattaag 27864801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 27865101 - 27865046
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagt 213  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  27865101 tgttggttacattttagtcccataagttattaacgttacaatttggtcctttaagt 27865046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 31596747 - 31596821
Alignment:
Q  385 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  31596747 aaatggtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 31596821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 19860526 - 19860579
Alignment:
Q  160 ttggttacattttagtctcataagttataaacgttacaatttggtcctttaagt 213  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  19860526 ttggttacattttagtcccataagttattaacgttacaatttggtcctttaagt 19860579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 38758866 - 38758941
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||| ||||||| ||||||||||| || ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  38758866 caaattataacgttgataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 38758941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 384 - 449
Target Start/End: Complemental strand, 21792294 - 21792228
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatca 449  Q
    |||||||||||||||||||||||||| |||||||||||| |||| ||||| |||| |||||||||||    
T  21792294 caaattgtaacgttaataacttatgggactaaaatgtaaccaaccaataaattaagggaccacatca 21792228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 458
Target Start/End: Complemental strand, 46684209 - 46684100
Alignment:
Q  349 atttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacat 447  Q
    |||||||||| ||| ||||||| ||||||  ||| ||||  |||| ||||||||||||||| |  ||||||||| |||||||||||||||| ||||| ||    
T  46684209 atttatttggctgacggaagataacttaag-ggaccaaaacgtaatgttaataacttatgggatcaaaatgtaaccaacaaataacttaagcgaccaaat 46684111  T
Q  448 cattaattaag 458  Q
    |||||||||||    
T  46684110 cattaattaag 46684100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 391 - 458
Target Start/End: Complemental strand, 16908000 - 16907932
Alignment:
Q  391 taacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  16908000 taacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaag 16907932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 24107454 - 24107406
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  24107454 tgttggttacattttagtcccataagttattaacgttacaatttggtcc 24107406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 21792251 - 21792298
Alignment:
Q  159 gttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  21792251 gttggttacattttagtcccataagttattaacgttacaatttggtcc 21792298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 3171522 - 3171580
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggt-cctttaagtta 215  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||| |||||||||||    
T  3171522 tgttggttacattttagtcccataagttattaatgttacaatttggtccctttaagtta 3171580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 38758641 - 38758699
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggt-cctttaagtta 215  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| || |||||||||||    
T  38758641 tgttggttacattttagtcccataagttattaacgttacaatttagtccctttaagtta 38758699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 21792376 - 21792432
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg 440  Q
    |||||||||||||||||||||||  | || ||||||||| |||||||||||||||||    
T  21792376 caaattgtaacgttaataacttagaggaccaaaatgtaaacaacaaataacttaagg 21792432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 458
Target Start/End: Original strand, 46685437 - 46685599
Alignment:
Q  295 acttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaattgtaac 394  Q
    ||||| || ||| |||||| ||||||||||  ||||||||||  |||||  ||| ||||||||||||| ||||||| ||||||  |||  | |  ||||     
T  46685437 acttgtaaagtgcatccaccttagacattgtgttaacggtttcgacggtgtgga-tttatttggttgacggaagataacttaag-ggactataacgtaat 46685534  T
Q  395 gttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    | ||||||||||||| || ||||||||| ||| |||||| |||| |||||| |||||||||||||    
T  46685535 gataataacttatgggaccaaaatgtaaccaataaataatttaagggaccaaatcattaattaag 46685599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 54446274 - 54446349
Alignment:
Q  384 caaattgtaacgttaataacttat-ggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaa 457  Q
    |||||||||| ||||||||||||| ||| | |||||||||  |||||||||||||| |||||| ||||||||||||    
T  54446274 caaattgtaatgttaataacttataggaccaaaaatgtaactaacaaataacttaagggaccaaatcattaattaa 54446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 14812503 - 14812450
Alignment:
Q  385 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa 438  Q
    ||||||||||||||||||||||||| || |||||||||  || |||||||||||    
T  14812503 aaattgtaacgttaataacttatgggaccaaaatgtaactaaaaaataacttaa 14812450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 18026154 - 18026106
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    ||||||||||||||||||| |||||||||| |||||||| |||| ||||    
T  18026154 tgttggttacattttagtcccataagttattaacgttaccatttagtcc 18026106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 18025941 - 18025882
Alignment:
Q  400 taacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||| || ||||||||| ||||||||||||||| |||||| | |||||||||||    
T  18025941 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaagcattaattaag 18025882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 11422426 - 11422381
Alignment:
Q  414 aaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  11422426 aaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 11422381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 21792420 - 21792343
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtc-ctttaagttagtatatgttagtcaaataa 234  Q
    ||||| ||||||||| |||   |||||||| ||||||||||||||||| | |||||||||||| ||| || |||||||    
T  21792420 tgttgtttacattttggtcctctaagttattaacgttacaatttggtctccttaagttagtatttgtaagccaaataa 21792343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 6e-98; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 158 - 457
Target Start/End: Complemental strand, 5841180 - 5840880
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg-c 256  Q
    ||||||||||||||| ||| ||||| |||| |||||||||||||||| |||||||||||||| |||||| |||||||||||| || | | |||||||| |    
T  5841180 tgttggttacattttggtcccataaattattaacgttacaatttggttctttaagttagtatttgttagccaaataaatccttactgtcagtcttttgtc 5841081  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||| |||||||    
T  5841080 aaaacgttaaataggaacatgtgaacggtgacgtgacaacttgcaatgcatatccaccttagacattggcttaacggttttgacggtgggga-tttattt 5840982  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||||||    
T  5840981 ggttgacggaagatgacttaaagggatcaaattgtaacgttaataacttatggcactaaaatataaccaacaaataacttaagggaccacatcattaatt 5840882  T
Q  456 aa 457  Q
    ||    
T  5840881 aa 5840880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 158 - 458
Target Start/End: Complemental strand, 23322401 - 23322100
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg-c 256  Q
    ||||||||||||||| ||  |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |  ||||||| |    
T  23322401 tgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatatgttagccaaataaatcctcaccgtcaatcttttgtc 23322302  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | |||||||||||||||||||  ||||||||| ||||||||||||||||||||||| |||| |||  ||||||||    
T  23322301 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaacatgtatccaccttagacattggcttaacggttttgacgg-tggagatttattt 23322203  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    | |||| ||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||  ||| ||||||||||||    
T  23322202 gcttgacggaagatgacttaaagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaatagactacatcattaatt 23322103  T
Q  456 aag 458  Q
    |||    
T  23322102 aag 23322100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 192 - 458
Target Start/End: Complemental strand, 15933625 - 15933358
Alignment:
Q  192 gttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aaaacgttaaataggcacatgtgatctgtgacgt 290  Q
    |||||| ||| |||| |||||||||||| |||||| ||||||||||||| | |   ||||||||| ||||||||||||| || ||||||| | |||||||    
T  15933625 gttacattttagtcccttaagttagtatctgttagccaaataaatcctctctgttagtcttttgccaaaacgttaaatatgcgcatgtgaacggtgacgt 15933526  T
Q  291 gacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaattg 390  Q
    ||||||||||||||| ||||||| ||| ||||||| ||||||||||| |||| |||| |||||||||||||| |||||||  |||||| |||  ||||||    
T  15933525 gacaacttgcaatgtttatccaccttaaacattgggttaacggttttgacgg-tggggatttatttggttgacggaagatagcttaaagggactaaattg 15933427  T
Q  391 taacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||||||||||  |||||||| ||| ||||||||||  ||| ||||||||||||| ||||||    
T  15933426 taacgttaataacttatgagactaaaatataaccaacaaataatataagggaccacatcattgattaag 15933358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 258 - 457
Target Start/End: Original strand, 25088924 - 25089123
Alignment:
Q  258 aaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttg 357  Q
    |||| ||||||| |||||||||| | ||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| ||||| || ||||||||||    
T  25088924 aaacattaaatacgcacatgtgaacggtgacgtgacaacttgcaacgtgtattcaccttagacattggcttaaccgttttgacggt-ggaaatttatttg 25089022  T
Q  358 gttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg-accacatcattaatta 456  Q
    |||||| |||||||||||||| ||||||||||||| | |||||||||||||  |||||||| ||| ||| ||||||||||||| ||||| ||||||||||    
T  25089023 gttgatagaagatgacttaaagggatcaaattgtagcattaataacttatgacactaaaatataaccaataaataacttaaggaaccacgtcattaatta 25089122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 258 - 457
Target Start/End: Original strand, 25146893 - 25147092
Alignment:
Q  258 aaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttg 357  Q
    |||| ||||||| |||||||||| | ||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| ||||| || ||||||||||    
T  25146893 aaacattaaatacgcacatgtgaacggtgacgtgacaacttgcaacgtgtattcaccttagacattggcttaaccgttttgacggt-ggaaatttatttg 25146991  T
Q  358 gttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg-accacatcattaatta 456  Q
    |||||| |||||||||||||| ||||||||||||| | |||||||||||||  |||||||| ||| ||| ||||||||||||| ||||| ||||||||||    
T  25146992 gttgatagaagatgacttaaagggatcaaattgtagcattaataacttatgacactaaaatataaccaataaataacttaaggaaccacgtcattaatta 25147091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 25088437 - 25088534
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg 255  Q
    ||||||||||||||| ||| ||||| |||| |||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||  |||||||||    
T  25088437 tgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcctcaccgttggtcttttg 25088534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 25146406 - 25146503
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg 255  Q
    ||||||||||||||| ||| ||||| |||| |||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||  |||||||||    
T  25146406 tgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcctcaccgttggtcttttg 25146503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 23322357 - 23322432
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  23322357 caaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 23322432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 215 - 377
Target Start/End: Original strand, 42793592 - 42793752
Alignment:
Q  215 agtatatgttagtcaaataaatcctcaccgccggtcttttgcaaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacg 314  Q
    |||||||||||| ||||||||||||||||| |  ||||   ||||| ||||||| || |||||||| | |||| ||||||||||||||||||||||||      
T  42793592 agtatatgttagccaaataaatcctcaccgtcaatcttgc-caaaatgttaaattggaacatgtgaacggtgatgtgacaacttgcaatgtgtatccatc 42793690  T
Q  315 ttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaa 377  Q
    ||||||||||| |||||| |||| || | ||  |||||||||||||||  |||||| ||||||    
T  42793691 ttagacattggattaacgattttgactg-tgaaaatttatttggttgacagaagataacttaa 42793752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 377 - 458
Target Start/End: Complemental strand, 34634152 - 34634070
Alignment:
Q  377 aatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactt-aaggaccacatcattaattaag 458  Q
    |||||| |||| ||||||||||||||||||||| || ||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  34634152 aatggaccaaaatgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaaaggaccacatcattaattaag 34634070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 34634101 - 34634181
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcc 238  Q
    ||||||||||| ||| ||| |||||||||| ||||||||| |||||||| |||||||||  | ||||||||||||||||||    
T  34634101 tgttggttacaatttggtcccataagttattaacgttacattttggtccattaagttagactctgttagtcaaataaatcc 34634181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 5841136 - 5841211
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaag 458  Q
    ||||||||||||||||||| |||||| || ||||||||| |||||||||| ||||| ||||| |||||||||||||    
T  5841136 caaattgtaacgttaataatttatgggaccaaaatgtaaccaacaaataagttaagagaccaaatcattaattaag 5841211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 9380001 - 9379932
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||  ||||||||||||    
T  9380001 gtaacgttaataacttgtggaaccaaaatgtaaccaacaaataacttaagggaccaattcattaattaag 9379932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 375 - 458
Target Start/End: Complemental strand, 43183316 - 43183232
Alignment:
Q  375 taaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||| ||| |||||||||| |||||||| |||||| || ||||||||| ||||||||||||||| |||||| || ||||||||||    
T  43183316 taaagggaccaaattgtaatgttaataatttatgggaccaaaatgtaaccaacaaataacttaagggaccaaattattaattaag 43183232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 42793025 - 42792950
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaag 458  Q
    ||||||||||| ||||||| |||||| || |||||| || |||||||||||||||| ||||| |||||||||||||    
T  42793025 caaattgtaacattaataatttatgggaccaaaatgaaaccaacaaataacttaagcgaccaaatcattaattaag 42792950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 15933389 - 15933437
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  15933389 tgttggttatattttagtctcataagttattaacgttacaatttagtcc 15933437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 23322131 - 23322179
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||    
T  23322131 tgttggttacattttagtcccataagttattaatgttacaatttggtcc 23322179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 9379963 - 9380044
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    ||||||||||||||| ||  || ||||||| ||||||||  |||||||| |||| |||  ||||||||| ||||||||||||    
T  9379963 tgttggttacattttggttccacaagttattaacgttacgttttggtcccttaacttataatatgttagccaaataaatcct 9380044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 9380756 - 9380675
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    |||||||||||||||  || |||||||||| || |||||  |||||||| || | |||  ||||||||||||||||||||||    
T  9380756 tgttggttacattttgatcccataagttattaatgttacgttttggtcccttcacttataatatgttagtcaaataaatcct 9380675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 25088481 - 25088428
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactta 437  Q
    ||||||||||||||||||| |||||  || ||||||||| ||||||||||||||    
T  25088481 caaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataactta 25088428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 25146450 - 25146397
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactta 437  Q
    ||||||||||||||||||| |||||  || ||||||||| ||||||||||||||    
T  25146450 caaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataactta 25146397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 42792981 - 42793041
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagta 218  Q
    |||||||| |||||| ||| ||||| |||| || ||||||||||||||| |||||||||||    
T  42792981 tgttggtttcattttggtcccataaattattaatgttacaatttggtcccttaagttagta 42793041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 1501132 - 1501053
Alignment:
Q  160 ttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    |||||| |||||| ||| ||||| |||| ||||||||| |||||||| ||||||||   |  ||||||||||||||||||    
T  1501132 ttggtttcattttggtcccataaattattaacgttacattttggtcccttaagttatattccgttagtcaaataaatcct 1501053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 458
Target Start/End: Original strand, 15933602 - 15933661
Alignment:
Q  400 taacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||| || |||||||||||| ||||||||||||||| |||||| ||||| |||||||    
T  15933602 taacttaagggactaaaatgtaaccaacaaataacttaagggaccaaatcatgaattaag 15933661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 440
Target Start/End: Original strand, 9380718 - 9380768
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg 440  Q
    ||||| |||||||||||||| |  ||||||||| |||||||||||||||||    
T  9380718 gtaacattaataacttatgggatcaaaatgtaaccaacaaataacttaagg 9380768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 9e-94; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 158 - 458
Target Start/End: Complemental strand, 10468783 - 10468482
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg-c 256  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| || ||| ||||||||||||||||| | ||| |||| |    
T  10468783 tgttggttacattttggtctcataagttattaacgttacaatttggtccgttaagttagtatctgctagccaaataaatcctcaccgtcagtcgtttgcc 10468684  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||| |||||||||||||    
T  10468683 aaaacattaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagatattgggttaacggttttgacgg-tgggaatttattt 10468585  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    |||||| ||||||||||||||| ||| |||||||||||||||| ||||||    |||||||||||| ||||||||||||||| ||||||||||| |||||    
T  10468584 ggttgacggaagatgacttaaagggaccaaattgtaacgttaaaaacttagatgactaaaatgtaaccaacaaataacttaagggaccacatcagtaatt 10468485  T
Q  456 aag 458  Q
    |||    
T  10468484 aag 10468482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 158 - 458
Target Start/End: Complemental strand, 12585461 - 12585160
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    |||||||||||||||  ||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||   | |||||||||     
T  12585461 tgttggttacattttgatctcataagttattaacattacaatttggtcccttaagttagtatatgttagccaaataaatcttcactatcagtcttttgcc 12585362  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||  ||| |||||||    
T  12585361 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattggtttaacagttttgacagtgagga-tttattt 12585263  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
     ||||| | ||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||    
T  12585262 tgttgacgaaagatgacttaaagggatcaaattgtaatgttaataacttatgagactaaaatgtaatcaacaaataacttaagggaccacgtcattaatt 12585163  T
Q  456 aag 458  Q
    |||    
T  12585162 aag 12585160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 158 - 456
Target Start/End: Original strand, 52677585 - 52677884
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||| ||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| || |  ||| ||||     
T  52677585 tgttggttacaatttggtcccataagttattaacgttacaatttggtccattaagttagtatatgttagccaaataaatcctcaacgtcaatctcttgcc 52677684  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| || ||||||||||    
T  52677685 aaaatgttaaataggcacatgtgaactgttacgtgacaacttgcaatgtgtatccaccttagacattggattaacggttttgacgg-tgagaatttattt 52677783  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    |||||| | ||||| ||||||| ||| |||||| |||| |||||||||||||  |||||||||||| ||||||||||| ||| |||||||||||||||||    
T  52677784 ggttgacgtaagataacttaaagggaccaaattataacattaataacttatgagactaaaatgtaaccaacaaataacctaagggaccacatcattaatt 52677883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 158 - 438
Target Start/End: Original strand, 16067357 - 16067637
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||||||||||   |||| |||| ||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||| |  ||||||||     
T  16067357 tgttggttacattttagttctataaattattaacgttacaatttggtcttttaagttagtatttgctagccaaataaatcctcaccgtcaatcttttgcc 16067456  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||||||||| || | || ||||||||||    
T  16067457 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcgatgtgtatccatcttagacattggcttaacggttttgacag-tgagaatttattt 16067555  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa 438  Q
    ||||   ||||||||||||||  ||| |||||||||||||||||||||||||  |||||||||||| |||||||||| ||||    
T  16067556 ggttagcggaagatgacttaaggggaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataatttaa 16067637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 160 - 456
Target Start/End: Complemental strand, 49028564 - 49028267
Alignment:
Q  160 ttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aa 258  Q
    ||||||||||||| ||| ||||| |||| || ||||||||||||||| |||||||||||| |||||| |||||||||| ||| || | ||||||||| ||    
T  49028564 ttggttacattttggtcccataaattattaatgttacaatttggtcccttaagttagtatttgttagccaaataaatcttcagcgtcagtcttttgccaa 49028465  T
Q  259 aacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttgg 358  Q
    ||| ||||||||  |||||||| | |||| |||||||||| |||||||||||||| ||||||||||  ||||||||||| ||||| |||| |||||||||    
T  49028464 aacattaaatagatacatgtgaacagtgatgtgacaacttacaatgtgtatccactttagacattgagttaacggttttgacggtgggga-tttatttgg 49028366  T
Q  359 ttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatta 456  Q
    |||| |||||||  |||||| ||| ||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  49028365 ttgacggaagatagcttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaatta 49028267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 179 - 457
Target Start/End: Original strand, 21038168 - 21038445
Alignment:
Q  179 ataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg-caaaacgttaaataggcacatg 277  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||  |  ||||||| ||||| |||||||| |||||||    
T  21038168 ataagttattaacgttacaatttggtcctttaagttagtatatgttagccaaataaatcatcaccatcaatcttttgccaaaatgttaaatatgcacatg 21038267  T
Q  278 tgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaa 377  Q
     || | |||||| ||||||||||||||| |||||||  |||||||||||||||||||||| |||| |||  |||||||||||||| ||||||||||||||    
T  21038268 agaacagtgacgcgacaacttgcaatgtatatccaccatagacattggcttaacggttttgacgg-tggagatttatttggttgacggaagatgacttaa 21038366  T
Q  378 atggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaa 457  Q
    |||||  ||||| ||||||||||||||||  | |||||||||||| || |||||||||||| ||| |||||||||||||||    
T  21038367 atggactaaattataacgttaataactta--ggactaaaatgtaaccagcaaataacttaagggatcacatcattaattaa 21038445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 158 - 399
Target Start/End: Complemental strand, 3990978 - 3990738
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||| ||| | |||| ||||||||||||||||| | |||||||||     
T  3990978 tgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttaatatctattagccaaataaatcctcaccgtcagtcttttgcc 3990879  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||| || || | |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  3990878 aaaacgttaaataggcacgtgcgaaccgtgatgtgacaacttgcaatgtgtatccaccttagacattggcttaacggttttgacgg-tgggaatttattt 3990780  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaa 399  Q
    |||||| |||||||||||||||  ||  |||||||||||||||    
T  3990779 ggttgacggaagatgacttaaa-agactaaattgtaacgttaa 3990738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 160 - 406
Target Start/End: Original strand, 9268058 - 9268304
Alignment:
Q  160 ttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aa 258  Q
    ||||||||||||| ||| |||||||||| || ||||||||||||||| |||||||||||| |||||| ||||||||||||||||| | ||||||||| ||    
T  9268058 ttggttacattttggtcccataagttattaaagttacaatttggtcccttaagttagtatttgttagccaaataaatcctcaccgtcagtcttttgcgaa 9268157  T
Q  259 aacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttgg 358  Q
    |||| |||||| | |||||||| | ||| |||||||||||||||| | ||||||| |||||| |||||||||||||||| | || |||| ||||||| ||    
T  9268158 aacgctaaataaggacatgtgaacggtggcgtgacaacttgcaatatatatccaccttagacgttggcttaacggttttgatgg-tggggatttattcgg 9268256  T
Q  359 ttgatggaagatgacttaaatggatcaaattgtaacgttaataactta 406  Q
    ||| |||||||| || |||| | || ||||||||||||||||||||||    
T  9268257 ttgctggaagataacctaaaggaattaaattgtaacgttaataactta 9268304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 178 - 458
Target Start/End: Original strand, 622110 - 622391
Alignment:
Q  178 cataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg-caaaacgttaaataggcacat 276  Q
    |||| ||||| ||||||| |||||||||| |||| ||||||| |||||| |||||||||||||| |  | |||||||| ||||||||||||||| |||||    
T  622110 catacgttattaacgttataatttggtcccttaaattagtatttgttagccaaataaatcctcatcatcagtcttttgtcaaaacgttaaatagacacat 622209  T
Q  277 gtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgactta 376  Q
    |||| | ||||||||||||||||||||  | |||||  |||||||||||||||||||| || || |  |||| ||||||||||||||| || ||||||||    
T  622210 gtgaacggtgacgtgacaacttgcaattagaatccatcttagacattggcttaacggtgttgacagagggga-tttatttggttgatgaaaaatgactta 622308  T
Q  377 aatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||  |||||||| ||||| |||||||| ||| |  ||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  622309 aaaagatcaaatcgtaacattaataacatataggtctaaaatgtaaccaacaaataacttaagggatcacatcattaattaag 622391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 259 - 458
Target Start/End: Complemental strand, 10286611 - 10286412
Alignment:
Q  259 aacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttgg 358  Q
    |||| |||||||||| |||||| | |||||||||||||||||||||| ||| ||| ||||||||||  ||||||||||| ||||| || || ||||||||    
T  10286611 aacgctaaataggcagatgtgaacagtgacgtgacaacttgcaatgtttattcaccttagacattgatttaacggttttgacggt-ggaaaattatttgg 10286513  T
Q  359 ttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaa 457  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  10286512 ttgaaggaagatgacttaaagggatcaaattgtaacgttaataactaatgggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 10286413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 288 - 459
Target Start/End: Complemental strand, 36098917 - 36098746
Alignment:
Q  288 cgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaa 387  Q
    ||||||| |||||||||||||||||| ||||| ||||| ||||||||||| ||||| | || ||||||| ||||| |||||||  |||||| ||| ||||    
T  36098917 cgtgacagcttgcaatgtgtatccaccttagatattggattaacggttttgacggtggaga-tttatttagttgacggaagatagcttaaagggaccaaa 36098819  T
Q  388 ttgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaagt 459  Q
    || |||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  36098818 ttataacgttaataatttatggaactaaaatataaccaacaaataacttaagagaccacatcattaattaagt 36098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 384 - 456
Target Start/End: Complemental strand, 21038191 - 21038119
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaatta 456  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||| |||||||||||    
T  21038191 caaattgtaacgttaataacttattgaaccaaaatataatcaacaaacaacttaaggaccaaatcattaatta 21038119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 45667264 - 45667350
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccg 244  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| |  ||||| ||| ||| |||||| |||||||||||||||||    
T  45667264 tgttggttacattttggtctcataagttattaacgttacaatttgattttttaatttaatatctgttagccaaataaatcctcaccg 45667350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 45667310 - 45667233
Alignment:
Q  382 atcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  45667310 atcaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 45667233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 377 - 458
Target Start/End: Complemental strand, 52677636 - 52677554
Alignment:
Q  377 aatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||| |||||||||||||||||||||||||| || ||| ||||| ||||||||||||||| |||||| || ||||||||||    
T  52677636 aatggaccaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaagggaccaaataattaattaag 52677554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 16067627 - 16067579
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16067627 tgttggttacattttagtctcataagttattaacgttacaatttggtcc 16067579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 3990934 - 3991009
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||| || ||||||||| |||||| |||||||| |||||| |||| ||||||||    
T  3990934 caaattgtaacgttaataacttatgggaccaaaatgtaaccaacaattaacttaagggaccaaatcaataattaag 3991009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 9268100 - 9268025
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||| |||||||||||||| || ||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  9268100 caaattgtaactttaataacttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaag 9268025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 10468739 - 10468814
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||||| || ||||||||||    
T  10468739 caaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatgattaattaag 10468814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Complemental strand, 16067401 - 16067346
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag 439  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  16067401 caaattgtaacgttaataatttatagaactaaaatgtaaccaacaaataacttaag 16067346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 9450923 - 9450992
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||| || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  9450923 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaag 9450992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 25225866 - 25225793
Alignment:
Q  385 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaa 457  Q
    ||||||||||||||||||||||||  || ||||| ||| ||||||||||||||| |||||| ||||||||||||    
T  25225866 aaattgtaacgttaataacttatgagaccaaaatataaccaacaaataacttaagggaccaaatcattaattaa 25225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 4437713 - 4437793
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcc 238  Q
    ||||||||||| ||| ||| |||||||||| ||||||||  ||||||||||||||||||  | |||||| |||||||||||    
T  4437713 tgttggttacaatttggtcccataagttattaacgttacgttttggtcctttaagttagactctgttagccaaataaatcc 4437793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 384 - 459
Target Start/End: Original strand, 12585417 - 12585493
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaagt 459  Q
    |||||||||| ||||||||||||||  |  ||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  12585417 caaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagt 12585493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 9449796 - 9449717
Alignment:
Q  380 ggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||  |||||||||||||||||||  || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  9449796 ggatcaaaacgtaacgttaataacttatgagaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaag 9449717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 49028522 - 49028597
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||| ||||||| |||||| || ||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  49028522 caaattgtaacattaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaag 49028597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 52677855 - 52677797
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggt-cctttaagtta 215  Q
    |||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||    
T  52677855 tgttggttacattttagtctcataagttattaatgttataatttggtccctttaagtta 52677797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 4439076 - 4438996
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcc 238  Q
    ||||||||||| ||| |||||||||||||| ||||||||  |||||||  |||||||||  | ||||||| ||||||||||    
T  4439076 tgttggttacaatttggtctcataagttattaacgttacgttttggtctcttaagttagactctgttagttaaataaatcc 4438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 457
Target Start/End: Complemental strand, 10202757 - 10202681
Alignment:
Q  382 atcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactt-aaggaccacatcattaattaa 457  Q
    ||||||||||||||||||||| |||||| || ||||||||| || ||||||| || ||||| || ||||||||||||    
T  10202757 atcaaattgtaacgttaataatttatgggaccaaaatgtaaccagcaaataatttaaaggatcaaatcattaattaa 10202681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 458
Target Start/End: Complemental strand, 17931361 - 17931290
Alignment:
Q  388 ttgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||||| || ||| ||||| ||| ||||||||||| ||||||  ||||||||||||    
T  17931361 ttgtaacgttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaag 17931290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 25225823 - 25225882
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagt 217  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||| |||  ||||||||||    
T  25225823 tgttggttatattttggtctcataagttattaacgttacaattttgtcgcttaagttagt 25225882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 4437751 - 4437682
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||| || ||| ||||| |||||||||| |||| |||||| | |||||||||||    
T  4437751 gtaacgttaataacttatgggaccaaattgtaaccaacaaataatttaatggaccaaaccattaattaag 4437682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 4439038 - 4439107
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataac-ttaaggaccacatcattaattaag 458  Q
    |||||||||||||||||||  || ||| ||||| ||||||||||| ||| ||||||| ||||||||||||    
T  4439038 gtaacgttaataacttatgagaccaaattgtaaccaacaaataactttagggaccacgtcattaattaag 4439107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 21325695 - 21325764
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaag 458  Q
    ||||||||||||||| |||  |||||||||||| |||||||||| ||||| || || |||||||||||||    
T  21325695 gtaacgttaataactaatgtgactaaaatgtaaccaacaaataatttaagagatcaaatcattaattaag 21325764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 28450821 - 28450752
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||| |||||||||||||| |  ||||||||| |||||||||| |||| |||||| |||||||||||||    
T  28450821 gtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaag 28450752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 28451579 - 28451498
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    ||||||||||||||| |||||||||| ||| ||| ||||  |||||||| |||| ||   || |||||||||||||||||||    
T  28451579 tgttggttacattttggtctcataagatattaacattacgttttggtcccttaacttgtaatctgttagtcaaataaatcct 28451498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 10286443 - 10286487
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttg 202  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||    
T  10286443 tgttggttacattttagtcccattagttattaacgttacaatttg 10286487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 12585191 - 12585235
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttg 202  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||    
T  12585191 tgttgattacattttagtctcataagttattaacattacaatttg 12585235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 49028296 - 49028344
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    ||||||||||||||||||| ||||| |||| |||||||| |||||||||    
T  49028296 tgttggttacattttagtcccataaattattaacgttaccatttggtcc 49028344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 17932138 - 17932209
Alignment:
Q  388 ttgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||| |||||||||||||| || ||| ||||| ||| ||||||||||| ||||||  ||||||||||||    
T  17932138 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaag 17932209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 622134 - 622077
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggac 442  Q
    |||||| ||||||||||||| |||||| | ||||| |||||||||||||||||| ||||    
T  622134 caaattataacgttaataacgtatggatc-aaaatataatcaacaaataacttatggac 622077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 28451541 - 28451610
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||| ||||||| ||||||  || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  28451541 gtaatgttaatatcttatgagaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaag 28451610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 158 - 458
Target Start/End: Complemental strand, 3659254 - 3658954
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    |||| |||||||||| ||| |||||||||| ||| |||||||||||||| |||||||||||| |||||| |||||||||||||||||   |||||||||     
T  3659254 tgttagttacattttggtcccataagttattaac-ttacaatttggtcccttaagttagtatttgttagccaaataaatcctcaccgtgagtcttttgcc 3659156  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||  |||||| |    
T  3659155 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttaacgg-tggagatttatct 3659057  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||| ||| ||||||||||| ||||||||||| |||||    
T  3659056 ggttgacggaagatgacttaaagggatcaaattgtaactttaataacttatgggactaaactgtaaccaataaataacttaagggaccacatcagtaatt 3658957  T
Q  456 aag 458  Q
    |||    
T  3658956 aag 3658954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 158 - 422
Target Start/End: Complemental strand, 5367718 - 5367454
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||||||| ||  |||||||||| |||||||||||||||||| |||||||||||| |||||| |||||||||||||||||   |||||||||     
T  5367718 tgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatttgttagccaaataaatcctcaccgttagtcttttgcc 5367619  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||  ||||||||    
T  5367618 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgggttaacggttttgacgg-tggagatttattt 5367520  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaa 422  Q
    ||||||  ||||||||||||||  || |||||||||| ||||||||||||||  ||||||||||||    
T  5367519 ggttgacagaagatgacttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtaa 5367454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 179 - 440
Target Start/End: Complemental strand, 28944531 - 28944266
Alignment:
Q  179 ataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaat----cctcaccgccggtcttttgc-aaaacgttaaataggca 273  Q
    |||| |||| || ||||||||||||| |||||||||||||||||||||||||||||||    | |||| |   ||||||||| |||||||||||||| ||    
T  28944531 ataaattattaatgttacaatttggttctttaagttagtatatgttagtcaaataaataaatcttcactgtgagtcttttgccaaaacgttaaatagaca 28944432  T
Q  274 catgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgac 373  Q
    ||||||| | ||||||| |||||||||||||||||| ||| ||||||||| | ||||||||||| |||| |||  |||||||||||||| | ||||| ||    
T  28944431 catgtgaacagtgacgttacaacttgcaatgtgtattcaccttagacattagattaacggttttgacgg-tggagatttatttggttgacgaaagataac 28944333  T
Q  374 ttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg 440  Q
    | ||| | | ||||||||||| ||||||||||| |  | |||||||||| |||||||| ||||||||    
T  28944332 tgaaaagaaccaaattgtaacattaataacttacgagattaaaatgtaaccaacaaatgacttaagg 28944266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 5367674 - 5367748
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaattaag 458  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  5367674 caaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaaggaccaaatcattaattaag 5367748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 295 - 458
Target Start/End: Complemental strand, 8286952 - 8286790
Alignment:
Q  295 acttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatc-aaattgtaa 393  Q
    ||||||||||||||||||| |||||||||   ||||||||| ||||||| |||| |||||||||||||  |||||| ||||||  ||| | ||| |||||    
T  8286952 acttgcaatgtgtatccaccttagacattttgttaacggttctaacggtgggga-tttatttggttgacagaagataacttaa--ggaactaaaatgtaa 8286856  T
Q  394 cgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||| ||||| || || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  8286855 cgttaattacttaagggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaag 8286790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 3659211 - 3659285
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||| ||||||||||||||| || |||||||||  |||||||||||||| |||||| |||||||||||||    
T  3659211 caaattgtaa-gttaataacttatgggaccaaaatgtaactaacaaataacttaagggaccaaatcattaattaag 3659285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 458
Target Start/End: Original strand, 8287390 - 8287499
Alignment:
Q  349 atttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacat 447  Q
    |||||||||||||| ||||||| ||||||  ||| |||| ||||||||| |  | |||  | |||||||||||| ||||||||||||||| |||||| ||    
T  8287390 atttatttggttgacggaagataacttaag-ggaccaaaatgtaacgttgaatagttaaaggactaaaatgtaaccaacaaataacttaagggaccaaat 8287488  T
Q  448 cattaattaag 458  Q
    |||||||||||    
T  8287489 cattaattaag 8287499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 5367451 - 5367504
Alignment:
Q  161 tggttacattttagtctcataagttataaacgttacaatttggtc-ctttaagt 213  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  5367451 tggttacattttagtctcataagttattaacattacaatttggtctctttaagt 5367504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 28944278 - 28944329
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtccttt 209  Q
    |||||||||||||||| |||| |||||||| || ||||||||||||| ||||    
T  28944278 tgttggttacattttaatctcgtaagttattaatgttacaatttggttcttt 28944329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 1e-89; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 158 - 459
Target Start/End: Original strand, 8905673 - 8905974
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||||||| |||||||||||||| || ||||||||||| |||   |||||||||| |||||| ||||||||||||||||| |||||||||||     
T  8905673 tgttggttacattttggtctcataagttattaatgttacaatttgatccca-aagttagtatttgttagccaaataaatcctcaccgtcggtcttttgcc 8905771  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| | |||||||||||    
T  8905772 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacattgacttaacggttttgacgg-taggaatttattt 8905870  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    |||||| |||||||||||||||  | |||||||||||| ||||||| ||||| || |||||| ||| ||||||||||||||| ||| |||||||||||||    
T  8905871 ggttgacggaagatgacttaaagtggtcaaattgtaaccttaataatttatgaaagtaaaatataaccaacaaataacttaagggatcacatcattaatt 8905970  T
Q  456 aagt 459  Q
    ||||    
T  8905971 aagt 8905974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 162 - 458
Target Start/End: Complemental strand, 4265275 - 4264978
Alignment:
Q  162 ggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aaaa 260  Q
    |||||||||||  || |||||||||| |||||||||||||||||| |||||||||||| |||| | ||||||||||||||| | | ||||||||| ||||    
T  4265275 ggttacattttgatcccataagttattaacgttacaatttggtccattaagttagtatctgtttgccaaataaatcctcactgtcagtcttttgccaaaa 4265176  T
Q  261 cgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttggtt 360  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| ||||||||||||    
T  4265175 cgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccactttagacattgggttaacggttttgacgg-tggggatttatttggtt 4265077  T
Q  361 gatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactt-aaggaccacatcattaattaag 458  Q
    || |||| ||  ||||||  || |||||||||| ||||||||||||||  |||||||||| | ||| ||||||||| || |||||||||||||||||||    
T  4265076 gacggaaaatagcttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtcaccaaaaaataacttaaaagaccacatcattaattaag 4264978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 8905721 - 8905642
Alignment:
Q  380 ggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaattaag 458  Q
    ||||||||||||||| |||||||||||||  || ||||||||| |||||||||||||||| ||||| |||||| ||||||    
T  8905721 ggatcaaattgtaacattaataacttatgagaccaaaatgtaaccaacaaataacttaagagaccaaatcattgattaag 8905642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 377 - 458
Target Start/End: Original strand, 4265228 - 4265310
Alignment:
Q  377 aatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||| |||||||||||||||||||||||||| |  ||||||||| | |||| |||||||| |||||| |||||||||||||    
T  4265228 aatggaccaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaactaacttaagggaccaaatcattaattaag 4265310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 8329046 - 8329114
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaattaag 458  Q
    |||||||||||||||| ||  || ||||||||| ||||||||||||||| |||||  ||||||||||||    
T  8329046 gtaacgttaataacttttgagaccaaaatgtaaccaacaaataacttaaagaccaattcattaattaag 8329114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 18471810 - 18471730
Alignment:
Q  157 ctgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatc 237  Q
    |||||||||||||||| |||||||||||||| ||| ||| | |||||||| |||| |||  || |||||| ||||||||||    
T  18471810 ctgttggttacattttggtctcataagttattaacattatattttggtcccttaacttataatctgttagccaaataaatc 18471730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 458
Target Start/End: Original strand, 25749396 - 25749464
Alignment:
Q  391 taacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||||||||||  |||||| ||||| ||||||||||||||| ||| ||||| ||||||||||    
T  25749396 taacgttaataacttatgagactaaattgtaaccaacaaataacttaagggaacacataattaattaag 25749464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 25749388 - 25749314
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||||||||||||||||||||||||||| ||  |||| ||||||| || |||||  |||||||||||||    
T  25749388 caaattgtaacgttaataacttatggaactaaaatatagccaac-aataactaaagggaccgaatcattaattaag 25749314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 4265011 - 4265056
Alignment:
Q  160 ttggttacattttagtctcataagttataaacgttacaatttggtc 205  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||||    
T  4265011 ttggtgacattttagtctcataagttattaacattacaatttggtc 4265056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 18470172 - 18470253
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    ||||||||||||||| | | |||||||||| || ||||   |||||||| |||| |||  || |||||||||||||||||||    
T  18470172 tgttggttacattttggccacataagttattaatgttaggttttggtcccttaacttataatctgttagtcaaataaatcct 18470253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 25749433 - 25749396
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgtta 195  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  25749433 tgttggttacaatttagtctcataagttattaacgtta 25749396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 5e-89; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 158 - 458
Target Start/End: Original strand, 42962801 - 42963102
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    |||||||| ||||||  |||||||||| |  |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||| |     
T  42962801 tgttggttgcattttgatctcataagtgactaacgttacaatttggtcccttaagttagtatatgttagccaaataaatcctcaccgtcagtctttttcc 42962900  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||| |||| ||||  ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||    
T  42962901 aaaacgttaaatagacacacgtgaattgtgacgtgacaacttgcaatgtgtgtccaccttagacattggtttaacggttttgacggt-gggaatttattt 42962999  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
     ||||| |||||||||||| || | | |||||||||||||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||||    
T  42963000 agttgacggaagatgacttgaaggcaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataacttaagggaccacatcattaatt 42963099  T
Q  456 aag 458  Q
    |||    
T  42963100 aag 42963102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 160 - 456
Target Start/End: Complemental strand, 38695189 - 38694892
Alignment:
Q  160 ttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttg-caa 258  Q
    ||||||||||||| ||| ||||| |||| |||||||||||||||||| |||||||||||| |||||| |||||||||||||| || | |||||||| |||    
T  38695189 ttggttacattttggtcccataaattattaacgttacaatttggtcccttaagttagtatttgttagccaaataaatcctcaacgtcagtcttttgccaa 38695090  T
Q  259 aacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatttgg 358  Q
    ||| |||||||||||||||||| | |||| |||||||||| |||||||||||||| ||||||||||  ||||||||||| |||| |||| ||||||||||    
T  38695089 aacattaaataggcacatgtgaacggtgatgtgacaacttacaatgtgtatccactttagacattgagttaacggttttgacgg-tggggatttatttgg 38694991  T
Q  359 ttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatta 456  Q
    |||| |||| ||  |||||| ||| ||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  38694990 ttgacggaaaatagcttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaatta 38694892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 214 - 458
Target Start/End: Original strand, 18171165 - 18171414
Alignment:
Q  214 tagtatatgttagtcaaataaatcctcaccgccggtcttttgc-aaaacgttaaataggc----acatgtgatctgtgacgtgacaacttgcaatgtgta 308  Q
    ||||||||||||| |||||||||||| |||| |  |||||| | ||||||||||||||||    ||| |||| | ||||| ||||||||||||||||||     
T  18171165 tagtatatgttagccaaataaatccttaccgtcaatctttttccaaaacgttaaataggctggcacacgtgaacggtgacatgacaacttgcaatgtgtg 18171264  T
Q  309 tccacgttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatg 408  Q
    ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||| || ||| ||||||||||  |||||||||||||    
T  18171265 tccaccttagacattggtttaacggttttgacggt-gggaatttatttggttgacggaagatgacttgaaaggaccaaattgtaattttaataacttatg 18171363  T
Q  409 gaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    | |||||||||||| |||||||||| |||| |||||| |||||||||||||    
T  18171364 ggactaaaatgtaaccaacaaataatttaagggaccatatcattaattaag 18171414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 38695147 - 38695222
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||| |||||||||||||    
T  38695147 caaattgtaacgttaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaag 38695222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 18166666 - 18166724
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttag 216  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||| |||||||||    
T  18166666 tgttggttacattttgatctcataagttattaacgttacaatttggtcccttaagttag 18166724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 42963071 - 42963025
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggt 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  42963071 tgttggttacattttagtctcataagttattaacgttacaatttggt 42963025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 14159277 - 14159208
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||| || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  14159277 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaag 14159208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 14160421 - 14160490
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||| || |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  14160421 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaag 14160490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 18166710 - 18166635
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||  |  ||||||||| |||||||||| |||| |||||| |||||||||||||    
T  18166710 caaattgtaacgttaataacttatgagatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaag 18166635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 4410634 - 4410709
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||| |||| ||||||||||||| || || ||| ||||| ||||||||||||||| |||||| |||||||||||||    
T  4410634 caaaatgtagcgttaataacttacgggaccaaattgtaaccaacaaataacttaagggaccaaatcattaattaag 4410709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 18171383 - 18171332
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtccttt 209  Q
    ||||||||||||||||||| |||||||||| ||  |||||||||||||||||    
T  18171383 tgttggttacattttagtcccataagttattaaaattacaatttggtccttt 18171332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 4409193 - 4409274
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    |||| |||||| ||| |||||||||||||| ||||||||  |||||||| ||||||||   |||||||| ||| ||||||||    
T  4409193 tgttagttacaatttggtctcataagttattaacgttacgttttggtcccttaagttaaattatgttagccaagtaaatcct 4409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 4733375 - 4733306
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||| ||||||||||||||| || ||||||||| |||||||||| |||| ||| || |||||||||||||    
T  4733375 gtaatgttaataacttatgggaccaaaatgtaaccaacaaataatttaagggatcaaatcattaattaag 4733306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 4734217 - 4734286
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||| | |  ||||||||| ||||||||||||||| ||||||  ||||||||||||    
T  4734217 gtaacgttaataacttataggatcaaaatgtaaccaacaaataacttaagggaccaattcattaattaag 4734286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 38694921 - 38694969
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    ||||||||||||||||||| ||||| |||| |||||||| |||||||||    
T  38694921 tgttggttacattttagtcccataaattattaacgttaccatttggtcc 38694969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 4410678 - 4410599
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatc 237  Q
    ||||||||||| ||| ||| | |||||||| |||| |||| |||||||| |||||||||  | |||||| ||||||||||    
T  4410678 tgttggttacaatttggtcccgtaagttattaacgctacattttggtcccttaagttagactctgttagccaaataaatc 4410599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 4733337 - 4733418
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    ||||||||||||||| ||| |||||||||| ||| ||||  |||||||| |||| |||  ||  ||||| ||||||||||||    
T  4733337 tgttggttacattttggtcccataagttattaacattacgttttggtcccttaatttataatccgttagccaaataaatcct 4733418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 4734255 - 4734174
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    |||||||||||||||  ||  ||||||||| ||||||||  |||||||| |||| |||  || |||||| ||||||||||||    
T  4734255 tgttggttacattttgatcctataagttattaacgttacgttttggtcccttaacttataatctgttagccaaataaatcct 4734174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 161; Significance: 2e-85; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 158 - 458
Target Start/End: Original strand, 19928 - 20232
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtctttt-gc 256  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| | ||||||| |     
T  19928 tgttggttacattttggtcgcataagttattaacgttacaatttggtcccttaagttagtatctgttagccaaataaatcctcaccgtcagtcttttggt 20027  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttt----taacggttgggaattt 352  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| ||||||| || ||||||||| | ||||||||||    | |||| |||| ||||    
T  20028 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaacgtgtatctaccttagacattaggttaacggttttgagtgacgg-tggggattt 20126  T
Q  353 atttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcatta 452  Q
    |||| |||||||||||||   ||||| ||| ||||||||||||||||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  20127 atttagttgatggaagatagtttaaagggaccaaattgtaacgttaataaattatggaattaaaatataaccaacaaataacttaaggaccacatcatta 20226  T
Q  453 attaag 458  Q
    ||||||    
T  20227 attaag 20232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 384 - 460
Target Start/End: Complemental strand, 19972 - 19895
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaagtt 460  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  19972 caaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagtt 19895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 134; Significance: 3e-69; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 158 - 438
Target Start/End: Original strand, 93664 - 93944
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    |||| |||||||||| ||| ||||| |||| ||||||||||||| |||| |||||||| ||| |||||| |||||||||| ||||||   |||||||||     
T  93664 tgttagttacattttggtcccataaattattaacgttacaatttagtcccttaagttactatttgttagccaaataaatcttcaccgtgagtcttttgcc 93763  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||| || |||| || ||||||||||| ||||||||||| ||||| |||| |||||||    
T  93764 aaaacgttaaataggcacatgtgaacggtgacgtaacaacttgcaacgtatatctaccttagacattggattaacggttttgacggtgggga-tttattt 93862  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa 438  Q
    |||| | |||||||  |||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||    
T  93863 ggttaacggaagatagcttaaaaggatcaaattgtaacgttaataatttatgggactaaaatgtaaccaacaaataaattaa 93944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 93707 - 93634
Alignment:
Q  385 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaattaag 458  Q
    |||||||||||||||||| |||||| || |||||||||  ||||||||||||||||| || |||||||||||||    
T  93707 aaattgtaacgttaataatttatgggaccaaaatgtaactaacaaataacttaaggatcaaatcattaattaag 93634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 93934 - 93883
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtccttt 209  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||| ||||||    
T  93934 tgttggttacattttagtcccataaattattaacgttacaatttgatccttt 93883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 6e-67; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 215 - 458
Target Start/End: Complemental strand, 18203019 - 18202775
Alignment:
Q  215 agtatatgttagtcaaataaatcctcaccgccggtcttttgc-aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccac 313  Q
    |||||||||||| ||||||||||||||||| |  |||||||| |||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||||    
T  18203019 agtatatgttagccaaataaatcctcaccgtcaatcttttgccaaaacgttaaatagacacatgtgaacggtgacgtgacaacttgcaacgtgtatccac 18202920  T
Q  314 gttagacattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaact 413  Q
     |||||||||| |||||||||||| ||||| | || |||||||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||  ||     
T  18202919 cttagacattgacttaacggttttgacggtggaga-tttatttgcttgatggaagattacttaaaaggatcaaattgtaacattaataacttatgagacg 18202821  T
Q  414 aaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||  ||| |||| ||||||||||    
T  18202820 aaaatgtaatcaacaaataacttaatagactacattattaattaag 18202775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 256 - 459
Target Start/End: Original strand, 30905858 - 30906061
Alignment:
Q  256 caaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttatt 355  Q
    |||||| ||||||||||| |||||| | ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||   || ||||||    
T  30905858 caaaacattaaataggcatatgtgaacggtgacatgacaacttgcaatgtgtacccaccttagacattggcttaacggttttgacggtgatga-tttatt 30905956  T
Q  356 tggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag-gaccacatcattaat 454  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  30905957 tggttgacggaagatgacttaaagggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagagaccacatcattaat 30906056  T
Q  455 taagt 459  Q
    |||||    
T  30906057 taagt 30906061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 18203316 - 18203390
Alignment:
Q  385 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||||| |||||||||||||    
T  18203316 aaattgtaacgttaataacttatggaaccaaaatataaccaataaataacttaagggaccaaatcattaattaag 18203390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 30906029 - 30905981
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcc 206  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  30906029 tgttggttacattttagtcccataagttattaacgttacaatttggtcc 30905981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 30905473 - 30905398
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||||||||||||||||| |||| ||| |||||| ||| |||||||||| |||| |||||| |||||||||||||    
T  30905473 caaattgtaacgttaataagttatagaattaaaatataaccaacaaataatttaagggaccaaatcattaattaag 30905398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 32539449 - 32539519
Alignment:
Q  389 tgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||| ||||||||||||||  | |||||||||| ||||||||||||||| |||||| |||||||||||||    
T  32539449 tgtaatgttaataacttatgagattaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 32539519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 10536071 - 10536002
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||| ||||||| ||||||| || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  10536071 gtaatgttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaag 10536002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 10536033 - 10536114
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    ||||||||||||||| ||| |||||| ||| ||| ||||  |||||||| |||| ||   ||||||||||||||||||||||    
T  10536033 tgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatatgttagtcaaataaatcct 10536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 10536792 - 10536861
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    ||||| |||||||||||||| |  ||||||||| |||||||||| |||| |||||| |||||||||||||    
T  10536792 gtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaag 10536861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 18202806 - 18202857
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtccttt 209  Q
    ||||| ||||||||| |||||||||||||| || ||||||||||| ||||||    
T  18202806 tgttgattacattttcgtctcataagttattaatgttacaatttgatccttt 18202857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 32539488 - 32539409
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatc 237  Q
    |||||||||||||||| ||||||||||||| ||| ||||| ||| |||| |||| |||  ||  ||||| ||||||||||    
T  32539488 tgttggttacattttaatctcataagttattaacattacatttttgtcccttaacttataatccgttagccaaataaatc 32539409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 441
Target Start/End: Complemental strand, 29275362 - 29275265
Alignment:
Q  344 tgggaatttatttggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagga 441  Q
    |||||||||||||  |||| |||| || | ||||| |||  ||||| |||| ||||||| |||||  |||| ||| ||| ||||||||||||||||||    
T  29275362 tgggaatttatttaattgacggaaaataatttaaagggactaaattataaccttaataaattatgagactagaatataaccaacaaataacttaagga 29275265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 158 - 449
Target Start/End: Complemental strand, 266923 - 266632
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||||||| ||| |||||||||| ||| ||| |||||||||| |||||||||||| |||||| |||||||||| ||||||     ||||| |     
T  266923 tgttggttacattttggtcacataagttattaaccttataatttggtcccttaagttagtatctgttagccaaataaatcttcaccgttaaccttttccc 266824  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    ||||||||||||||| ||||||||   |||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||| |||  |||||||||||||    
T  266823 aaaacgttaaataggaacatgtgaatggtgacgtgacaacttgtaatgtgtattcaccttagacattgggttaacggttttgacg--tgggaatttattt 266726  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaagg-accacatca 449  Q
    |||||| | ||||| | ||||| ||| |||||| |||| |||||||||||| | |||||||||||| ||||||||||||||||| |||||||||    
T  266725 ggttgacgtaagataatttaaagggaccaaattataacattaataacttatcggactaaaatgtaaccaacaaataacttaaggaaccacatca 266632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 266879 - 266953
Alignment:
Q  384 caaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataactt-aaggaccacatcattaattaa 457  Q
    |||||| ||| ||||||||||||||  || ||||||||| ||||||||||||| |||||||| ||||||||||||    
T  266879 caaattataaggttaataacttatgtgaccaaaatgtaaccaacaaataacttaaaggaccaaatcattaattaa 266953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 9e-63; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 158 - 459
Target Start/End: Complemental strand, 37499475 - 37499177
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcctcaccgccggtcttttgc- 256  Q
    ||||||||||||||| |||||||||||||| || |||| ||||| |||  |||||||||||| |||||| |||||||||| | |||| | |||||||||     
T  37499475 tgttggttacattttggtctcataagttattaatgttataatttcgtctcttaagttagtatctgttagccaaataaatcattaccgtcagtcttttgcc 37499376  T
Q  257 aaaacgttaaataggcacatgtgatctgtgacgtgacaacttgcaatgtgtatccacgttagacattggcttaacggttttaacggttgggaatttattt 356  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||| ||  |||||||||    
T  37499375 aaaacgttaaataggcacatgtgaacggtgacgtgacaacttgcaatgtgtatccaccttagacactgacttaacggttttgacgg-tgaaaatttattt 37499277  T
Q  357 ggttgatggaagatgacttaaatggatcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaatt 455  Q
    |||| |  |||||||||||||| |||  ||||||||||    ||   |||||  | |||||||||| ||||||||||||||| |||||| ||||||||||    
T  37499276 ggttaacagaagatgacttaaagggactaaattgtaac----attggttatgagattaaaatgtaagcaacaaataacttaagggaccaaatcattaatt 37499181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 30335229 - 30335305
Alignment:
Q  382 atcaaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaaggaccacatcattaattaag 458  Q
    |||||||||||||||||||||||||||  |||||| |||||  ||||||||||||||||||||||||||||||||||    
T  30335229 atcaaattgtaacgttaataacttatgagactaaagtgtaagtaacaaataacttaaggaccacatcattaattaag 30335305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 9114890 - 9114821
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  9114890 gtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggacaaaatcattaattaag 9114821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 14903877 - 14903808
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  14903877 gtaacgttaataacttatgggatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 14903808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 30335123 - 30335181
Alignment:
Q  319 acattggcttaacggttttaacggttgggaatttatttggttgatggaagatgacttaaa 378  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||  |||||||||||||    
T  30335123 acattggcttaacggttttgacggt-ggaaatttatttggttgatcaaagatgacttaaa 30335181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 9114852 - 9114933
Alignment:
Q  158 tgttggttacattttagtctcataagttataaacgttacaatttggtcctttaagttagtatatgttagtcaaataaatcct 239  Q
    ||||||||||||||| ||| |||||||||| ||||||||  |||||||| |||| |||  ||  ||||| ||||||||||||    
T  9114852 tgttggttacattttggtcccataagttattaacgttacgttttggtcccttaatttataattcgttagccaaataaatcct 9114933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 14904596 - 14904665
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||| ||||||| ||||||| || ||||||||| ||||||||||||||| |||| | |||||||||||||    
T  14904596 gtaatgttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaag 14904665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 17690936 - 17691005
Alignment:
Q  390 gtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaag 458  Q
    |||||||||||||||||||| || | ||  ||| ||||||||||||||| |||||| |||||||||||||    
T  17690936 gtaacgttaataacttatgggaccagaacataaccaacaaataacttaagggaccaaatcattaattaag 17691005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 17689807 - 17689737
Alignment:
Q  389 tgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaa-ggaccacatcattaattaagt 459  Q
    ||||||||| ||||||||||  || |||  |||||||||||||||||||| |||||| ||||||||||||||    
T  17689807 tgtaacgtttataacttatgagaccaaac-gtaatcaacaaataacttaagggaccaaatcattaattaagt 17689737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 9116064 - 9116110
Alignment:
Q  392 aacgttaataacttatggaactaaaatgtaatcaacaaataacttaa 438  Q
    |||||||||||||||||  || ||||||||| |||||||||||||||    
T  9116064 aacgttaataacttatgagaccaaaatgtaaccaacaaataacttaa 9116110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 30335269 - 30335231
Alignment:
Q  164 ttacattttagtctcataagttataaacgttacaatttg 202  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  30335269 ttacactttagtctcataagttattaacgttacaatttg 30335231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 37499432 - 37499486
Alignment:
Q  385 aaattgtaacgttaataacttatggaactaaaatgtaatcaacaaataacttaag 439  Q
    ||||| |||| |||||||||||||  || ||||||||| ||||||||||||||||    
T  37499432 aaattataacattaataacttatgagaccaaaatgtaaccaacaaataacttaag 37499486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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