View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8609_low_1 (Length: 438)
Name: NF8609_low_1
Description: NF8609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8609_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 40047999 - 40048409
Alignment:
| Q |
19 |
agcagcaggtgccttagtcccaaagaaatcaagaggaagcaaaaccttatccaaacgatatatagcaagcttgttatcttgatagactacaccagtaaca |
118 |
Q |
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| T |
40047999 |
agcagcaggtgccttagtcccaaagaaatcaagaggaagcaaaaccttatccaaacgatatatagcaagcttgttatcttgatagactacaccagtaaca |
40048098 |
T |
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| Q |
119 |
ctagcattaaccacaccagttgaaagactaacactggtaccaaacgattcgatgttcaatggaagctttaaagggtctttaccagccactgtctcaacag |
218 |
Q |
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| T |
40048099 |
ctagcattaaccacaccagttgaaagactaacactggtaccaaacgattcgatgttcaatggaagctttaaagggtctttaccagccactgtctcaacag |
40048198 |
T |
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| Q |
219 |
ggttactaagagaatcaaagttattgctatcaacaaactgtggaagaatgtggaattgtaatagttcgannnnnnngttttcgtttagtgagttgaagaa |
318 |
Q |
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| T |
40048199 |
ggttactaagagaatcaaagttattgctatcaacaaactgtggaagaatgtggaattgtaatagttcgatttttttgttttcgtttagcgagttgaagaa |
40048298 |
T |
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| Q |
319 |
ccccgctttgagatgcgagaaagctgagtcatccggtgccaagattgttaatccgccgctttttggtgatatgagttgtgagtttaggttgtccacgatt |
418 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40048299 |
ccctgctttgagatgcgagaaagctgagtcatccggtgccaagattgttaatccgccgctttttgctgatatgagttgtgagtttaggttgtccacgatt |
40048398 |
T |
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| Q |
419 |
tgtgttcttct |
429 |
Q |
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| T |
40048399 |
tgtgttgttct |
40048409 |
T |
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