View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8609_low_5 (Length: 213)
Name: NF8609_low_5
Description: NF8609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8609_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 19084975 - 19085113
Alignment:
| Q |
59 |
ggagtgtctaagcatattgaaaatataaatgttgagaatttttaatcttattaagcatgcctttttgaatattgaattttagaatacggatcatgctacg |
158 |
Q |
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| T |
19084975 |
ggagtggctaagcatattgaaaatataaatgttgagaatttttaatcttattaagcatgcctttttgaatattgaattttagaatacgaatcatgctacg |
19085074 |
T |
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| Q |
159 |
tactataaggctgaaaaagggagagtaacagaagaaatt |
197 |
Q |
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| T |
19085075 |
tactataaggctgaaaaagagagagtaacagaagaaatt |
19085113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 7280496 - 7280634
Alignment:
| Q |
59 |
ggagtgtctaagcatattgaaaatataaatgttgagaatttttaatcttattaagcatgcctttttgaatattgaattttagaatacggatcatgctacg |
158 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |
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| T |
7280496 |
ggagtgtctaagcatattgaaaatataaaggttgagaatttttaatcttattaagcatgcctttttcaatattgaattttagaatatgaatcatgctacg |
7280595 |
T |
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| Q |
159 |
tactataaggctgaaaaagggagagtaacagaagaaatt |
197 |
Q |
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| T |
7280596 |
tactataaggttgaaaaagagagagtaacagaagaaatt |
7280634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 12988511 - 12988642
Alignment:
| Q |
64 |
gtctaagcatattgaaaatataaatgttgagaatttttaatcttattaagcatgcctttttgaatattgaattttagaatacggatcatgctacgtacta |
163 |
Q |
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| T |
12988511 |
gtctaagcatatttaaaatataaaggttaagaatttttaatcttattaagcaggccttttccaatattgaattttagaatatgaatcatactatgttcta |
12988610 |
T |
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| Q |
164 |
taaggctgaaaaagggagagtaacagaagaaatt |
197 |
Q |
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| T |
12988611 |
taaggctgaagaa--gagagtaacagaagaaatt |
12988642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 22746980 - 22747035
Alignment:
| Q |
59 |
ggagtgtctaagcatattgaaaatataaatgttgagaatttttaatcttattaagc |
114 |
Q |
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| T |
22746980 |
ggagtgtataagcatattgaaaatataaaggttgagaatttttaatcttattaagc |
22747035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 22747038 - 22747078
Alignment:
| Q |
157 |
cgtactataaggctgaaaaagggagagtaacagaagaaatt |
197 |
Q |
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| T |
22747038 |
cgtactataaggctgaaaaagagagagtaacagaagaaatt |
22747078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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