View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8610_high_3 (Length: 369)
Name: NF8610_high_3
Description: NF8610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8610_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 41846611 - 41846271
Alignment:
| Q |
11 |
atcatcaaatgtgatacttgacaagaatggggttgcttgcataggtgactttggtttgtcactattattaaaccctgctcacgcagttgcaaggctgggt |
110 |
Q |
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| T |
41846611 |
atcatcaaatgtgatacttgacaagaatggggttgcttgcataggtgactttggtttgtcactgttattaaaccctgctcacgcagttgcaaggctgggt |
41846512 |
T |
|
| Q |
111 |
gggtacagggctccagaacaggcggaagctaagaagctttcacaagaggcagacgtgtatgcttttggagtattggtgttggaaattttgacaggaagag |
210 |
Q |
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| T |
41846511 |
gggtacagggctccagaacaggcggaagctaagaagctttcacaagaggcagacgtgtatgcttttggagtattggtgttggaagttttgacaggaagag |
41846412 |
T |
|
| Q |
211 |
ctccttcctctcagtattcttctcccgtaggagttcgctcttgcgtggaatttgaagaacaagaagctgatcttccaaaatgggttcggtctgttgtgaa |
310 |
Q |
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| T |
41846411 |
ctccttcctctcagtattcttctccagtaggagttcgctcttgcgtggaatttgaagaacaagaagctgatcttccaaaatgggttcggtctgttgtgaa |
41846312 |
T |
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| Q |
311 |
ggatgagtggacatcagaggtgtttgatcaagaacttttga |
351 |
Q |
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| T |
41846311 |
ggatgagtggacatcagaggtgtttgatcaagaacttttga |
41846271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 26890387 - 26890507
Alignment:
| Q |
11 |
atcatcaaatgtgatacttgacaagaatggggttgcttgcataggtgactttggtttgtcactattattaaaccctgctcacgcagttgcaaggctgggt |
110 |
Q |
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|||||| ||||| ||||||||||||| || |||||||||||| ||||||||| ||||||||| | |||||||||| ||| ||| |||| | ||||| |
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| T |
26890387 |
atcatccaatgtactacttgacaagaacggtgttgcttgcatatctgactttgggttgtcactactgttaaaccctgttcatgcaactgcacgattgggt |
26890486 |
T |
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| Q |
111 |
gggtacagggctccagaacag |
131 |
Q |
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|||||||| || || |||||| |
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| T |
26890487 |
gggtacagagcacctgaacag |
26890507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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