View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8610_high_5 (Length: 252)

Name: NF8610_high_5
Description: NF8610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8610_high_5
NF8610_high_5
[»] chr8 (19 HSPs)
chr8 (1-252)||(33961574-33961825)
chr8 (1-252)||(33976871-33977122)
chr8 (13-214)||(11221374-11221575)
chr8 (1-214)||(45133515-45133728)
chr8 (1-214)||(24091823-24092021)
chr8 (59-214)||(27925576-27925731)
chr8 (1-214)||(25240256-25240469)
chr8 (1-214)||(23541506-23541720)
chr8 (1-110)||(9996454-9996563)
chr8 (37-118)||(22485090-22485171)
chr8 (57-214)||(22472633-22472792)
chr8 (3-114)||(20254980-20255091)
chr8 (1-76)||(1562462-1562537)
chr8 (1-75)||(12240228-12240302)
chr8 (1-54)||(12814687-12814740)
chr8 (1-48)||(8726861-8726908)
chr8 (1-48)||(39080982-39081029)
chr8 (1-54)||(22476241-22476294)
chr8 (1-54)||(24384572-24384625)
[»] chr3 (33 HSPs)
chr3 (1-214)||(295311-295524)
chr3 (1-190)||(28051011-28051200)
chr3 (1-214)||(44452331-44452544)
chr3 (1-214)||(20748259-20748470)
chr3 (1-214)||(18034990-18035204)
chr3 (1-214)||(13790530-13790743)
chr3 (1-214)||(15635968-15636181)
chr3 (1-214)||(18064300-18064516)
chr3 (1-214)||(19633738-19633950)
chr3 (3-211)||(19531980-19532188)
chr3 (1-131)||(17702340-17702470)
chr3 (1-143)||(13524776-13524917)
chr3 (1-130)||(24195459-24195587)
chr3 (8-214)||(1919338-1919543)
chr3 (5-143)||(23954656-23954795)
chr3 (1-118)||(18547595-18547712)
chr3 (1-77)||(6580961-6581037)
chr3 (1-77)||(17042848-17042924)
chr3 (1-78)||(15686252-15686329)
chr3 (1-79)||(9031476-9031553)
chr3 (2-119)||(13913738-13913853)
chr3 (2-78)||(11558414-11558489)
chr3 (2-78)||(11567683-11567758)
chr3 (1-111)||(21094796-21094902)
chr3 (5-113)||(286991-287103)
chr3 (1-66)||(31649690-31649754)
chr3 (1-53)||(3445100-3445151)
chr3 (1-119)||(18476877-18476993)
chr3 (1-48)||(11656038-11656085)
chr3 (9-76)||(14406732-14406799)
chr3 (41-131)||(17140440-17140531)
chr3 (1-54)||(21719020-21719072)
chr3 (1-45)||(8749059-8749103)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-214)||(26255-26468)
[»] chr7 (36 HSPs)
chr7 (1-214)||(16436625-16436838)
chr7 (1-214)||(4458590-4458803)
chr7 (1-214)||(29546232-29546437)
chr7 (1-215)||(16207976-16208190)
chr7 (1-214)||(11998730-11998943)
chr7 (1-146)||(20991460-20991606)
chr7 (1-218)||(11588311-11588528)
chr7 (1-214)||(11521505-11521717)
chr7 (1-214)||(13455207-13455419)
chr7 (1-213)||(644985-645197)
chr7 (1-159)||(10279721-10279878)
chr7 (42-214)||(12325676-12325848)
chr7 (1-110)||(26133009-26133118)
chr7 (87-180)||(10279620-10279712)
chr7 (44-214)||(14165017-14165186)
chr7 (1-114)||(7586625-7586737)
chr7 (1-110)||(10658338-10658447)
chr7 (1-111)||(23956831-23956941)
chr7 (1-114)||(24902059-24902170)
chr7 (1-54)||(9894161-9894214)
chr7 (41-114)||(20925232-20925305)
chr7 (1-117)||(21260462-21260579)
chr7 (1-77)||(42636235-42636311)
chr7 (1-80)||(7620066-7620144)
chr7 (1-75)||(23057196-23057270)
chr7 (1-74)||(10251431-10251504)
chr7 (1-116)||(14926596-14926711)
chr7 (1-116)||(15350062-15350177)
chr7 (1-76)||(31269149-31269224)
chr7 (1-75)||(20596919-20596993)
chr7 (1-74)||(7508426-7508499)
chr7 (1-74)||(14687358-14687431)
chr7 (1-74)||(23082868-23082941)
chr7 (1-48)||(48797713-48797760)
chr7 (57-119)||(9566852-9566914)
chr7 (1-33)||(30226117-30226149)
[»] chr5 (21 HSPs)
chr5 (1-214)||(13735069-13735282)
chr5 (3-198)||(26036677-26036872)
chr5 (4-214)||(30605789-30605996)
chr5 (3-214)||(9422565-9422776)
chr5 (1-214)||(26329309-26329522)
chr5 (1-214)||(25105516-25105730)
chr5 (1-214)||(25164609-25164823)
chr5 (5-214)||(22404861-22405070)
chr5 (2-114)||(13338543-13338654)
chr5 (1-118)||(24189809-24189926)
chr5 (1-214)||(18220976-18221174)
chr5 (1-131)||(23420657-23420787)
chr5 (1-115)||(13942093-13942207)
chr5 (1-111)||(20714832-20714942)
chr5 (1-111)||(23623831-23623941)
chr5 (1-130)||(20845890-20846018)
chr5 (1-95)||(7898010-7898103)
chr5 (2-119)||(22130931-22131046)
chr5 (1-74)||(24117586-24117659)
chr5 (1-85)||(20498249-20498332)
chr5 (3-78)||(17661508-17661583)
[»] chr1 (22 HSPs)
chr1 (1-214)||(11667957-11668169)
chr1 (1-213)||(1973166-1973377)
chr1 (1-219)||(4245882-4246099)
chr1 (1-214)||(26972495-26972707)
chr1 (5-143)||(20859641-20859779)
chr1 (1-131)||(14745877-14746007)
chr1 (1-111)||(17851467-17851577)
chr1 (1-161)||(23478029-23478189)
chr1 (88-214)||(9451992-9452117)
chr1 (1-214)||(13165248-13165458)
chr1 (1-142)||(20841359-20841500)
chr1 (1-114)||(10340251-10340364)
chr1 (1-74)||(17379717-17379790)
chr1 (2-114)||(41330897-41331009)
chr1 (1-110)||(12753016-12753125)
chr1 (2-75)||(18390200-18390273)
chr1 (1-110)||(15804205-15804314)
chr1 (1-110)||(17038203-17038310)
chr1 (1-74)||(17355925-17355998)
chr1 (1-48)||(17012019-17012066)
chr1 (1-74)||(8281911-8281984)
chr1 (1-119)||(47941434-47941551)
[»] chr4 (29 HSPs)
chr4 (1-214)||(10724110-10724323)
chr4 (1-214)||(10937879-10938092)
chr4 (1-214)||(10190737-10190950)
chr4 (1-214)||(21477959-21478171)
chr4 (57-214)||(8163633-8163790)
chr4 (1-214)||(16383740-16383954)
chr4 (1-214)||(25116674-25116889)
chr4 (1-214)||(15700406-15700605)
chr4 (1-214)||(15162583-15162796)
chr4 (1-110)||(33899084-33899193)
chr4 (1-110)||(18618212-18618321)
chr4 (1-118)||(28019250-28019368)
chr4 (1-77)||(9068933-9069009)
chr4 (1-114)||(13399399-13399512)
chr4 (1-214)||(23400290-23400497)
chr4 (1-75)||(33737973-33738047)
chr4 (1-114)||(41785385-41785498)
chr4 (1-75)||(32861637-32861711)
chr4 (1-80)||(23541229-23541307)
chr4 (1-76)||(50907840-50907915)
chr4 (1-95)||(25354731-25354824)
chr4 (1-110)||(33745918-33746027)
chr4 (1-85)||(22554950-22555033)
chr4 (1-48)||(24143151-24143198)
chr4 (1-75)||(2679839-2679913)
chr4 (1-48)||(11325241-11325288)
chr4 (1-71)||(19659432-19659502)
chr4 (1-74)||(10198346-10198418)
chr4 (171-215)||(33899448-33899492)
[»] chr6 (37 HSPs)
chr6 (37-213)||(8465799-8465975)
chr6 (1-214)||(20558153-20558365)
chr6 (1-214)||(12039777-12039990)
chr6 (1-214)||(25805304-25805517)
chr6 (2-146)||(20470299-20470443)
chr6 (1-214)||(25782661-25782875)
chr6 (1-214)||(15897769-15897982)
chr6 (1-214)||(20989860-20990073)
chr6 (1-214)||(33665644-33665857)
chr6 (1-143)||(13195245-13195387)
chr6 (1-214)||(14258761-14258974)
chr6 (1-146)||(29255011-29255155)
chr6 (1-162)||(23882789-23882949)
chr6 (37-143)||(25948450-25948556)
chr6 (1-214)||(9281804-9282017)
chr6 (1-214)||(17234442-17234655)
chr6 (1-131)||(17855128-17855258)
chr6 (1-114)||(26965666-26965779)
chr6 (1-214)||(17864520-17864720)
chr6 (1-128)||(17527980-17528107)
chr6 (39-114)||(17869951-17870026)
chr6 (39-114)||(17879703-17879778)
chr6 (63-214)||(21717702-21717853)
chr6 (63-214)||(21725538-21725689)
chr6 (42-114)||(12385261-12385333)
chr6 (42-145)||(21706486-21706589)
chr6 (1-77)||(24501812-24501888)
chr6 (1-78)||(12444815-12444891)
chr6 (1-94)||(15038319-15038411)
chr6 (1-74)||(18152801-18152874)
chr6 (2-106)||(30424894-30424998)
chr6 (1-80)||(9384599-9384677)
chr6 (1-96)||(34657247-34657341)
chr6 (171-214)||(13870561-13870604)
chr6 (155-214)||(29255152-29255211)
chr6 (168-213)||(19894775-19894820)
chr6 (137-214)||(34991214-34991291)
[»] scaffold0226 (3 HSPs)
scaffold0226 (1-214)||(18221-18433)
scaffold0226 (1-214)||(27615-27827)
scaffold0226 (1-214)||(7635-7848)
[»] chr2 (18 HSPs)
chr2 (1-214)||(12910340-12910553)
chr2 (1-214)||(23758476-23758689)
chr2 (1-214)||(24790254-24790467)
chr2 (1-130)||(36398890-36399019)
chr2 (42-214)||(22610743-22610915)
chr2 (1-115)||(21250292-21250407)
chr2 (1-75)||(12952462-12952536)
chr2 (1-110)||(19466618-19466727)
chr2 (1-74)||(31587467-31587539)
chr2 (1-76)||(20649652-20649727)
chr2 (1-119)||(21530330-21530449)
chr2 (1-114)||(22582363-22582477)
chr2 (1-65)||(24283624-24283688)
chr2 (1-80)||(18765661-18765739)
chr2 (1-74)||(27111071-27111143)
chr2 (1-76)||(24317905-24317981)
chr2 (1-54)||(19198374-19198426)
chr2 (1-54)||(25347204-25347257)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-215)||(17373-17587)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-214)||(16720-16933)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-214)||(25769-25982)
[»] scaffold0059 (2 HSPs)
scaffold0059 (1-214)||(50187-50401)
scaffold0059 (1-214)||(61569-61782)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-214)||(110352-110566)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-213)||(87588-87799)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-214)||(36856-37069)
[»] scaffold0338 (1 HSPs)
scaffold0338 (1-214)||(16309-16522)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-113)||(40287-40398)
[»] scaffold0185 (1 HSPs)
scaffold0185 (1-131)||(2454-2584)
[»] scaffold0333 (1 HSPs)
scaffold0333 (1-214)||(5495-5709)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-77)||(3111-3186)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-114)||(202346-202459)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-54)||(36603-36656)
[»] scaffold0505 (1 HSPs)
scaffold0505 (1-74)||(10131-10204)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-74)||(37357-37429)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 33961825 - 33961574
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33961825 ctacactagttgatttccttcctgacgtggtagcccccagagtaggtgagtttgttaccgaactgggtcaacaaactcacagtgttctttactttcttgt 33961726  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || || ||||| |||||| ||||||||||||||| |||||  ||||||||||    
T  33961725 catttattttcttgttttgatttctgtttatttcgtgatgttggaacatttaagggaacgttataaacgttgaaacatcttacagaactaattaaaacaa 33961626  T
Q  201 gtgcgctagaattttcaaatatctccattaacaaacttcactttgttctttg 252  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||||||||    
T  33961625 gtgcgctttaattttcaaatatctccattaacaaacttcacattgttctttg 33961574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 33977122 - 33976871
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||| ||||| |||||| | |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  33977122 ctacactagtggatttcctttctgacttggtagcccccagagtaggtgcgtttgttaccgaactgggtcaacaaactcacagtattctttactttcttgt 33977023  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||| ||   ||||||||||||| | |||||||||||||||    
T  33977022 catttattttcttgttttgatttctgtttatttcgtgatgttggaacattgaacggaacattacaaatattgaaacatcttacaaaacatattaaaacaa 33976923  T
Q  201 gtgcgctagaattttcaaatatctccattaacaaacttcactttgttctttg 252  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33976922 gtgtgctagaattttcaaatatctccattaacaaacttcactttgttctttg 33976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 11221374 - 11221575
Alignment:
Q  13 atttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttct 112  Q
    ||||||||||||   |||||| | ||||||||||||||||||  |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  11221374 atttccttcctggtttggtagcccccagagtaggtgtgtttgtcaccgaactaggtcaacaaactcactgtgttctttactttcctgtcatttattttct 11221473  T
Q  113 tgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaat 212  Q
    |||||| ||||||||||||||| |||||||||||  || |||||||||||  || |||| ||||||| || | |||| ||||||||||||||||||||||    
T  11221474 tgtttttatttctgtttatttcatgatgttggaacattgaacggaacattgaaaacgtttaaacatcgtacaaaacaaattaaaacaagtgcgctagaat 11221573  T
Q  213 tt 214  Q
    ||    
T  11221574 tt 11221575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45133728 - 45133515
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | || ||| | ||||||||||||||||||  |||||||||||||||||||||||  |||| ||||||||||||||    
T  45133728 ctacactagtggatttccttcctggcttgatagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcaatgtgtcctttactttcttgt 45133629  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | |||||||||||||||| ||||||||||||  | ||||||| |||  || ||| |||||||  ||  ||| ||||||| || |||||||||||||||||    
T  45133628 cgtttattttcttgtttttatttctgtttatcgcatgatgttagaacattgaacagaacattgcaaatgttaaaacatcgtagagaacatattaaaacaa 45133529  T
Q  201 gtgcgctagaattt 214  Q
    |||| |||||||||    
T  45133528 gtgcactagaattt 45133515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 24092021 - 24091823
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | | ||||||||||||||||  |||||||| ||||||||||||||| |||||||||||||||||||    
T  24092021 ctacactagtggatttccttcctggcttggtagcccctagagtaggtgtgtttgtcaccgaactaggtcaacaaactcactgtgttctttactttcttgt 24091922  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
                   ||| |||||||||||||||||||||||||||  || ||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  24091921 ---------------ttttatttctgtttatttcgtgatgttggaacattgaacagaacattataaacgttgaaacatcttacagaacatattaaaacaa 24091837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 214
Target Start/End: Original strand, 27925576 - 27925731
Alignment:
Q  59 cgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaa 158  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||  || |||| ||    
T  27925576 cgaactgggtcaacaaactcactgtgttctttactttcctgtcatttattttcttgtttttatttctgtttatttcgtgatgttgaaacattgaacgaaa 27925675  T
Q  159 cattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
    ||||  |  |||| |||||||| | | ||||||||||||||| |||||||||||||    
T  27925676 cattgcatacgttaaaacatctgacataacatattaaaacaaatgcgctagaattt 27925731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25240469 - 25240256
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||| ||||||||||||||||   |||||| | ||   |||||||||||||  |||||||||||| ||||||||||  ||    |||||||||||||    
T  25240469 ctacactggtggatttccttcctggtttggtagcccccttggtaggtgtgtttgtcaccgaactgggtaaacaaactcaatgtaccttttactttcttgt 25240370  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    ||||||||| |||||||| |||| |||||| |||||||| ||||||  || ||||||||||||||| ||||||||||||  | | |||||||||||||||    
T  25240369 catttatttccttgtttttatttttgtttacttcgtgatattggaacattgaacggaacattataaccgttgaaacatcgcacataacatattaaaacaa 25240270  T
Q  201 gtgcgctagaattt 214  Q
    || |||||||||||    
T  25240269 gtacgctagaattt 25240256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 23541506 - 23541720
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||| |   |||||| | ||||||||||||||||||  |||||||| ||||||||||||||  ||||||||||| ||| |||    
T  23541506 ctacactagtggatttccttcccggtttggtagcccccagagtaggtgtgtttgtcaccgaactaggtcaacaaactcattgtgttctttacattcctgt 23541605  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacg-gaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    |||||||||||||||||| ||||||| ||||  |||||||||||||  || | ||  ||||||  || |||| ||||||| || | |||||||||||| |    
T  23541606 catttattttcttgtttttatttctgcttatcgcgtgatgttggaacattgatcgtaaacattgcaaacgttaaaacatcatacataacatattaaaata 23541705  T
Q  200 agtgcgctagaattt 214  Q
    |||||| ||||||||    
T  23541706 agtgcggtagaattt 23541720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 9996563 - 9996454
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||  |||||||||||| ||||||||  | ||||  |||||||||||||    
T  9996563 ctacaatagtggatttcattcctgacttggtagtctccagagtaggtgtgtttgtcaccgaactgggttaacaaacttgctgtgtcttttactttcttgt 9996464  T
Q  101 catttatttt 110  Q
    | ||||||||    
T  9996463 cttttatttt 9996454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 22485171 - 22485090
Alignment:
Q  37 ccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgtttt 118  Q
    ||||||||| ||||||||  |||||||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||    
T  22485171 ccagagtagttgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctgtcttttattttcttgtttt 22485090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 22472792 - 22472633
Alignment:
Q  57 accgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttg--ttttgatttctgtttatttcgtgatgttggaattttcaac 154  Q
    ||||||||||||||||| |||||  ||||||||||||||| |||| ||||||||||||  |||| | ||||||||||   ||||||||| ||  || | |    
T  22472792 accgaactgggtcaacatactcattgtgttctttactttcatgtcttttattttcttgtttttttaattctgtttatcgtgtgatgttgaaacattaatc 22472693  T
Q  155 ggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
    | |||||   || |||| ||||||| || ||||| ||||||||||||||  |||||||||    
T  22472692 gtaacatcgcaaacgttaaaacatcatacagaacgtattaaaacaagtgtcctagaattt 22472633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 20254980 - 20255091
Alignment:
Q  3 acactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtca 102  Q
    |||||||||||||||||||||  | |||||| | ||| ||||  ||||||||  |||||||||||||||||||||  |  ||   |||||||||||||||    
T  20254980 acactagtggatttccttcctagcttggtagcccccatagtacatgtgtttgtcaccgaactgggtcaacaaactgtcgctgccttttactttcttgtca 20255079  T
Q  103 tttattttcttg 114  Q
    ||||||||||||    
T  20255080 tttattttcttg 20255091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1562462 - 1562537
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaac 76  Q
    |||||||||||||||||||||||| | |||||| | ||| ||||||||||||||   ||||||||||| |||||||    
T  1562462 ctacactagtggatttccttcctggcttggtagcccccaaagtaggtgtgtttgtcgccgaactgggttaacaaac 1562537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12240302 - 12240228
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaa 75  Q
    ||||||||| ||||||||||||||   |||||| |||| |||||||||||||||  |||||||||||| ||||||    
T  12240302 ctacactagcggatttccttcctggtttggtagcctccggagtaggtgtgtttgtcaccgaactgggttaacaaa 12240228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12814687 - 12814740
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttg 54  Q
    ||||||||||| |||||||||||| | |||||| | ||||||||||||||||||    
T  12814687 ctacactagtgaatttccttcctggcttggtagcccccagagtaggtgtgtttg 12814740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8726908 - 8726861
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtg 48  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||    
T  8726908 ctacactagtggatttccttcctggcttggtagcccccagagtaggtg 8726861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39081029 - 39080982
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtg 48  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||    
T  39081029 ctacactagtggatttccttcctggcttggtagcccccagagtaggtg 39080982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22476294 - 22476241
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttg 54  Q
    |||||||||||||||||||||||| | |||||| |  || ||||||||||||||    
T  22476294 ctacactagtggatttccttcctggcttggtagccctcaaagtaggtgtgtttg 22476241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24384625 - 24384572
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttg 54  Q
    |||||||||||||||| ||||||| | |||||| | |||||||| |||||||||    
T  24384625 ctacactagtggattttcttcctggcttggtagcccccagagtacgtgtgtttg 24384572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 295524 - 295311
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||    
T  295524 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcactgtgttctttactttcttgt 295425  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    || ||||||||||||||| ||| |||||||||||| |||||| |||  || ||||||||||||||| | ||||||||||||| ||||||||||| |||||    
T  295424 caattattttcttgtttttattcctgtttatttcgagatgttagaacattgaacggaacattataaacattgaaacatcttacagaacatattagaacaa 295325  T
Q  201 gtgcgctagaattt 214  Q
    ||||| ||||||||    
T  295324 gtgcgttagaattt 295311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 28051200 - 28051011
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||| ||||||||||||||| | |||||| | ||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||    
T  28051200 ctacactattggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccaaactgggtcaacaaactcaccgtgttctttactttcttgt 28051101  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacat 190  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||  || ||||||||||||||| |||||||| |||||| |||||||    
T  28051100 catttactttcttgtttttatttctgtttaattcgtgatgttggaacattgaacggaacattataaacgttgaaatatcttacagaacat 28051011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 44452544 - 44452331
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccaga-gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    |||||||||||||||||||||||| | ||| || | | ||| |||||||||||||  |||||||||||||||||||||||  ||||||||||||||| ||    
T  44452544 ctacactagtggatttccttcctggcttgg-agcccctagacgtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctg 44452446  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    || |||||||||||||||| |||||| |||||  |||||||||||||  || |||| ||||||  || |||| |||||||| | ||||||||||||||||    
T  44452445 tcgtttattttcttgtttttatttctttttatcacgtgatgttggaacattaaacgaaacattgcaaacgttaaaacatctgacagaacatattaaaaca 44452346  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  44452345 agtgcgctagaattt 44452331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20748259 - 20748470
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtg-tgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    |||||||||||||||||||||||| | |||||| | ||| |||||||| ||||  | |||||||||||| ||||||||||   |||||||||||||||||    
T  20748259 ctacactagtggatttccttcctggcttggtagcc-ccaaagtaggtgatgtt--gcaccgaactgggttaacaaactcattatgttctttactttcttg 20748355  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||  || |||| |||||   || |||| ||||||| || | ||||||||||||||    
T  20748356 tcatttattttcttgtttttatttctgtttatcgcgtgatgttggaacattgaacgtaacatcgcaaacgttaaaacatcatacaaaacatattaaaaca 20748455  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  20748456 agtgcgctagaattt 20748470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18034990 - 18035204
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||||||||||||  |||||||||||| ||||||||||  ||||  ||||||||| | |    
T  18034990 ctacactagtggatttccttcctggcttggtagcctcaagagtaggtgtgtttgtcaccgaactgggttaacaaactcattgtgtcttttactttcctct 18035089  T
Q  101 catttattttcttgttttgatttctgtt-tatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    |||||||||||||||||| |||| |||| ||  ||||||||||| ||  || || |||||| || || |||| ||||||| || | ||||||||||||||    
T  18035090 catttattttcttgtttttatttttgttataactcgtgatgttgaaaacttaaatggaacactacaaacgtttaaacatcgtacaaaacatattaaaaca 18035189  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  18035190 agtgcgctagaattt 18035204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 13790743 - 13790530
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||  ||||||||| || | |||||| | ||| ||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||    
T  13790743 ctacactagtatatttccttcttggcttggtagcccccatagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcatgt 13790644  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | |||||||||||||||| ||||||||||||  |||||||||| ||  || | || ||||||  || ||  | |||||| || |||||||||||||||||    
T  13790643 cttttattttcttgtttttatttctgtttatcgcgtgatgttgaaacattaatcgtaacattgcaaacgccgtaacatcatacagaacatattaaaacaa 13790544  T
Q  201 gtgcgctagaattt 214  Q
    ||| ||||||||||    
T  13790543 gtgtgctagaattt 13790530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 15635968 - 15636181
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||| |||||||||||| | |||||| | ||||||||||||||||||  |||||||||||||| ||||||||  ||||||||||||||| |||    
T  15635968 ctacactagtgaatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcatcaaactcattgtgttctttactttcatgt 15636067  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
     ||||||||||||||||| ||||||||||||  |||||||||| ||  || | || | ||||  || || | |||||||  | ||||| |||||||||||    
T  15636068 tatttattttcttgtttttatttctgtttatcgcgtgatgttgaaacattaatcgtagcattgaaaacgctaaaacatcaaacagaacgtattaaaacaa 15636167  T
Q  201 gtgcgctagaattt 214  Q
    ||| ||||||||||    
T  15636168 gtgtgctagaattt 15636181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18064300 - 18064516
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||||||||||||  |||||||||||| ||||||||||  ||||  ||||||||| |||    
T  18064300 ctacactagtggatttccttcctgccttggtagcctctagagtaggtgtgtttgtcaccgaactgggttaacaaactcattgtgtcttttactttcctgt 18064399  T
Q  101 catttattttcttgttttgatttctgtt-tatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaac--atattaaaa 197  Q
    ||||||||||||| |||| ||||||||| ||  ||||||||||| ||| || ||| ||||| || || |||| ||||||| || | |||  |||||||||    
T  18064400 catttattttcttatttttatttctgttataactcgtgatgttgaaatattaaacagaacactacaaacgtttaaacatcgtacataacatatattaaaa 18064499  T
Q  198 caagtgcgctagaattt 214  Q
    |||||||||| ||||||    
T  18064500 caagtgcgcttgaattt 18064516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 19633950 - 19633738
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | | ||||||| ||||||||   | ||||| ||||||||||||||| ||||| |||||||||||||    
T  19633950 ctacactagtggatttccttcctggcttggtagcc-ctagagtagatgtgtttgtcgctgaactaggtcaacaaactcactgtgttatttactttcttgt 19633852  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    || ||||||||||||||| ||||||||||||  | |||||||||||  || |||| ||||||  || |||| ||||||| |  | |||||||||||||||    
T  19633851 caattattttcttgtttttatttctgtttatcgcatgatgttggaacattgaacgtaacattgcaaacgttaaaacatcatgcaaaacatattaaaacaa 19633752  T
Q  201 gtgcgctagaattt 214  Q
    || |||||||||||    
T  19633751 gtacgctagaattt 19633738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 19531980 - 19532188
Alignment:
Q  3 acactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtca 102  Q
    |||||||||||||||||||||| | |||||| | ||| ||||||||||||||  |||||| ||| ||||||||||||  ||||||||||||||| | ||     
T  19531980 acactagtggatttccttcctggcttggtagcccccaaagtaggtgtgtttgtcaccgaattggatcaacaaactcattgtgttctttactttcctttct 19532079  T
Q  103 tttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagt 202  Q
    | |||||||||||||| ||||||||||||  |||||||||| ||  || | || ||||||  || || || |||||| ||||||||||||||||||||||    
T  19532080 tgtattttcttgtttttatttctgtttatcgcgtgatgttgaaacattgatcgtaacattgaaaacgctgtaacatcatatagaacatattaaaacaagt 19532179  T
Q  203 gcgctagaa 211  Q
    | |||||||    
T  19532180 gtgctagaa 19532188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 17702470 - 17702340
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||| ||||||||  |||||||||||||||||||||||  ||||||||||||||   ||    
T  17702470 ctacactagtggatttccttcctggcttggtagcccccagagtagttgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttacttttcagt 17702371  T
Q  101 catttattttcttgttttgatttctgtttat 131  Q
    | |||||||||||||||| ||||||||||||    
T  17702370 cttttattttcttgtttttatttctgtttat 17702340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 13524776 - 13524917
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||| |||||||||||||| |||| |||||| | ||||||||||||| ||||  |||||||||||||||||||||||   ||||||||||||||||||    
T  13524776 ctacaccagtggatttccttcttgacttggtagcccccagagtaggtgt-tttgtgaccgaactgggtcaacaaactcattttgttctttactttcttgt 13524874  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttg 143  Q
      |||||||||||||||||| || |||||||  ||||||||||    
T  13524875 tgtttattttcttgttttgacttatgtttatcgcgtgatgttg 13524917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24195587 - 24195459
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| || | |||||| | |||||||||||||||||   |||||||||||||||||||||||  ||||||||||| ||| |||    
T  24195587 ctacactagtggatttccttcttggcttggtagcc-ccagagtaggtgtgtttttcaccgaactgggtcaacaaactcattgtgttctttacattcctgt 24195489  T
Q  101 catttattttcttgttttgatttctgttta 130  Q
    | |||||||||||||||| |||||||||||    
T  24195488 cttttattttcttgtttttatttctgttta 24195459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 1919338 - 1919543
Alignment:
Q  8 agtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttat 107  Q
    |||||||||||||| || | |||||| | ||| ||||||||||||||  |  ||||||||||||||||||||  ||||| ||||||||| |||||||||     
T  1919338 agtggatttccttcttggcttggtagcc-ccatagtaggtgtgtttgtcatggaactgggtcaacaaactcattgtgttatttactttcctgtcatttac 1919436  T
Q  108 tttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgct 207  Q
    ||||||||||| ||||||||||||  |||||||||| ||  || |  | ||||||  || ||  |||||| | || ||||| ||||||||||||||||||    
T  1919437 tttcttgtttttatttctgtttatcgcgtgatgttgaaacattaattgtaacattgcaaacgcggaaacaacatacagaacgtattaaaacaagtgcgct 1919536  T
Q  208 agaattt 214  Q
    |||||||    
T  1919537 agaattt 1919543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 23954656 - 23954795
Alignment:
Q  5 actagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatt 104  Q
    |||| ||||||||||||||| | |||||| ||||||||||||||||||||  |||||||||| ||||||||||||  || |||||||||| | |||| ||    
T  23954656 actaatggatttccttcctggcttggtagcctccagagtaggtgtgtttgccaccgaactggatcaacaaactcattgtattctttacttacatgtcttt 23954755  T
Q  105 tattttcttg-ttttgatttctgtttatttcgtgatgttg 143  Q
    |||||||||| |||| |||| |||||||| | ||||||||    
T  23954756 tattttcttgttttttatttatgtttattgcatgatgttg 23954795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 18547712 - 18547595
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||| ||||||||||||||| | |||||| | ||||||||||||||||||  |||||| ||||||||||||||||  || |||| ||||||| |||    
T  18547712 ctacactattggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaattgggtcaacaaactcattgtattctctactttcctgt 18547613  T
Q  101 catttattttcttgtttt 118  Q
    |||||||||| |||||||    
T  18547612 catttattttgttgtttt 18547595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6580961 - 6581037
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaact 77  Q
    |||||||||||||||||||| ||| | |||||| || |||||||||||||||||  |||||||||||| ||||||||    
T  6580961 ctacactagtggatttccttgctggcttggtagccttcagagtaggtgtgtttgtcaccgaactgggttaacaaact 6581037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17042848 - 17042924
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaact 77  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||||||||  ||| |||||| | ||||||||    
T  17042848 ctacactagtggatttccttcctgccttggtagcctccagagtaggtgtgtttgtcaccaaactggtttaacaaact 17042924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15686252 - 15686329
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactc 78  Q
    |||||||| ||||||||||||||| | |||||| | | ||||||||||||||||  | ||||||||||||||||||||    
T  15686252 ctacactaatggatttccttcctggcttggtagcccctagagtaggtgtgtttgtcatcgaactgggtcaacaaactc 15686329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9031476 - 9031553
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactca 79  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||   || | |||||||||||| ||||||||||    
T  9031476 ctacactagtggatttccttcctgacttggtagcccccagagtaggtgacgtt-gcaccgaactgggttaacaaactca 9031553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 13913853 - 13913738
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtc 101  Q
    |||||||| ||||||||| |||| | |||||| | ||||||||||||   |||  ||||||| |||| ||||||||| | ||||| ||||||||||||||    
T  13913853 tacactagcggatttcct-cctggcttggtagcccccagagtaggtgacgttgc-accgaaccgggttaacaaactctctgtgttttttactttcttgtc 13913756  T
Q  102 atttattttcttgttttg 119  Q
     |||||||| ||||||||    
T  13913755 ttttattttgttgttttg 13913738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 11558414 - 11558489
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactc 78  Q
    ||||||||||||||||||||||| | |||||| ||||| |||||||||| |||  |||||||| ||| |||||||||    
T  11558414 tacactagtggatttccttcctggcttggtagcctccatagtaggtgtg-ttgtcaccgaacttggttaacaaactc 11558489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 11567683 - 11567758
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactc 78  Q
    ||||||||||||||||||||||| | |||||| ||||| |||||||||| |||  |||||||| ||| |||||||||    
T  11567683 tacactagtggatttccttcctggcttggtagcctccatagtaggtgtg-ttgtcaccgaacttggttaacaaactc 11567758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 21094796 - 21094902
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||||||||||    |||||| |||||||||| || |  || | ||||||||||| |    
T  21094796 ctacactagtgaatttccttcctgacttggtag-ccccagagtaggtgtgtttg---tcgaactaggtcaacaaattctctctgctatttactttcttat 21094891  T
Q  101 catttattttc 111  Q
    | |||||||||    
T  21094892 cttttattttc 21094902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 286991 - 287103
Alignment:
Q  5 actagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacag----tgttctttactttcttgt 100  Q
    ||||||||||||||||||||   |||||||| ||| |||| |||||||||  | |||||| ||| ||||||||||| |    | || |||||| ||||||    
T  286991 actagtggatttccttcctggtttggtagtccccatagtaagtgtgtttgtcatcgaactaggttaacaaactcactgttttttttttttactctcttgt 287090  T
Q  101 catttattttctt 113  Q
    |||||||||||||    
T  287091 catttattttctt 287103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31649754 - 31649690
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgg 66  Q
    |||||| ||||||||||||||||| | |||||| | ||||||||||||||||||  ||||||||||    
T  31649754 ctacacgagtggatttccttcctggcttggtagac-ccagagtaggtgtgtttgtcaccgaactgg 31649690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3445100 - 3445151
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgttt 53  Q
    |||||||||||||||||||||||||| || ||| || ||||||||||||||||    
T  3445100 ctacactagtggatttccttcctgacttgatagcct-cagagtaggtgtgttt 3445151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18476993 - 18476877
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccaga-gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    |||||||||||||||||||||||| | |||||| | ||||| ||||||| |||  || ||||||||||| |||||||||   |||   ||||||||||||    
T  18476993 ctacactagtggatttccttcctggcttggtag-ccccagatgtaggtgagtt--gtgccgaactgggttaacaaactctttgtgccttttactttcttg 18476897  T
Q  100 tcatttattttcttgttttg 119  Q
    || ||||||||  |||||||    
T  18476896 tcttttatttttctgttttg 18476877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11656085 - 11656038
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtg 48  Q
    ||||||||||| ||||| |||||||| |||||| ||||||||||||||    
T  11656085 ctacactagtgaatttctttcctgacttggtagcctccagagtaggtg 11656038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 14406732 - 14406799
Alignment:
Q  9 gtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaac 76  Q
    |||||||||||||||| | |||||| |  || ||||||||||||||  |||||||||||| |||||||    
T  14406732 gtggatttccttcctggcttggtagcccacaaagtaggtgtgtttgtcaccgaactgggttaacaaac 14406799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 17140440 - 17140531
Alignment:
Q  41 agtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcattta-ttttcttgttttgatttctgtttat 131  Q
    |||||||| |||||   ||||| |||||||||||| |||   |||||||||||||| || | |||| ||||||||||||||||| |||||||    
T  17140440 agtaggtgagtttgacgccgaattgggtcaacaaattcattatgttctttactttcctggcttttatttttcttgttttgatttatgtttat 17140531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21719020 - 21719072
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttg 54  Q
    |||||||||||||||||||||||| | |||||| ||  ||||||||||||||||    
T  21719020 ctacactagtggatttccttcctggcttggtagcct-tagagtaggtgtgtttg 21719072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8749103 - 8749059
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtag 45  Q
    |||||||||||||||||||||||  | |||||||| |||||||||    
T  8749103 ctacactagtggatttccttcctagcttggtagtccccagagtag 8749059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 26468 - 26255
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| | ||| ||||||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||    
T  26468 ctacactagtggatttccttccttgcttggtagcccccatagtaggtgtgtttgtcaccgaattgggtcaacaaactcactgtgttctttactttcttgt 26369  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||| |||| |||||| ||||||||||| |||||||||||||||   | ||||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  26368 catttactttcatgtttttatttctgtttaattcgtgatgttggaaaaatgaacggaacattataaacgttgaaacatcttacagaacattttaaaacaa 26269  T
Q  201 gtgcgctagaattt 214  Q
     | |||||||||||    
T  26268 ttacgctagaattt 26255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 16436838 - 16436625
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| | ||| ||||||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||    
T  16436838 ctacactagtggatttccttccttgcttggtagcccccatagtaggtgtgtttgtcaccgaattgggtcaacaaactcactgtgttctttactttcttgt 16436739  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||| |||| |||||| ||||||||||| |||||||||||||||   | ||||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  16436738 catttactttcatgtttttatttctgtttaattcgtgatgttggaaaaatgaacggaacattataaacgttgaaacatcttacagaacattttaaaacaa 16436639  T
Q  201 gtgcgctagaattt 214  Q
     | |||||||||||    
T  16436638 ttacgctagaattt 16436625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 4458803 - 4458590
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||| ||||||||||||| | |||||| | ||||||||||||||||||  |||||||| |||||||||| |||| ||||||||||||||| |||    
T  4458803 ctacactagtagatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaactcggtcaacaaattcactgtgttctttactttcctgt 4458704  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| |||||||||| || || ||||||||||  || |||||||||||  || |||| |||||||| | |||||||||||||||||    
T  4458703 catttattttcttgtttttatttctgtttgttacgcgatgttggaacattaaacggaacattgcaaacgttaaaacatctgacagaacatattaaaacaa 4458604  T
Q  201 gtgcgctagaattt 214  Q
    ||||||| ||||||    
T  4458603 gtgcgctcgaattt 4458590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 29546232 - 29546437
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||| |||||||||||||||||| | |||||| | | |||||||||||       || ||| ||||||||||||||||| |||||||||||||||||||    
T  29546232 ctacagtagtggatttccttcctggcttggtagccccgagagtaggtgt-------actgaattgggtcaacaaactcactgtgttctttactttcttgt 29546324  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||  || ||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  29546325 catttatttttttgtttttatttctgtttattttgtgatgttggaacattgaacggaacattataaacgttgaaacatcttaca-aacatattaaaacaa 29546423  T
Q  201 gtgcgctagaattt 214  Q
     || ||||||||||    
T  29546424 atgtgctagaattt 29546437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 16207976 - 16208190
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||||||||   ||||| ||||||||||||||||  || |||||||||||| | |    
T  16207976 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcgccgaaatgggtcaacaaactcattgtcttctttactttcctat 16208075  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||| ||||||| |||| |||||||| |||||||||||||  || |||| ||||||| ||  ||| ||||||| || | |||||||||||||||    
T  16208076 catttattttattgtttttatttatgtttattgcgtgatgttggaacattgaacgaaacattacaaatgttaaaacatcatacataacatattaaaacaa 16208175  T
Q  201 gtgcgctagaatttt 215  Q
    ||| |||||||||||    
T  16208176 gtgtgctagaatttt 16208190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 11998943 - 11998730
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccaga-gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    |||||||||||||||||||||||| | ||| || | || || |||||||||||||  | |||||||||||||||||||||  ||||||||||||||| ||    
T  11998943 ctacactagtggatttccttcctggcttgg-agcccccggacgtaggtgtgtttgtcatcgaactgggtcaacaaactcattgtgttctttactttcctg 11998845  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    || ||||||||||||||||  |||||||||||  |||||||||||||  || |||||||||||  || |||| |||||||| | | ||||||||||||||    
T  11998844 tcgtttattttcttgtttttgtttctgtttatcacgtgatgttggaacattaaacggaacattgcaaacgttaaaacatctgacataacatattaaaaca 11998745  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  11998744 agtgcgctagaattt 11998730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 20991606 - 20991460
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||    
T  20991606 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctgt 20991507  T
Q  101 catttattttcttg-ttttgatttctgtttatttcgtgatgttggaa 146  Q
    |||||||||||||| |||| |||| |||||| |||||||||||||||    
T  20991506 catttattttcttgttttttatttatgtttacttcgtgatgttggaa 20991460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11588528 - 11588311
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | | ||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||| |||    
T  11588528 ctacactagtggatttccttcctggcttggtagccgctagagtaggtgtgtttgtcaccgagctgggtcaacaaactcactgtgttctttactttc-tgt 11588430  T
Q  101 cattta-ttttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    | |||| ||||||| |||| |||||||||| || | |||||||| ||  || | || ||||||  || ||| | |||||| || | ||||||||||||||    
T  11588429 cttttatttttcttatttttatttctgtttgttgcatgatgttgaaacattaatcgtaacattgcaaacgtcgtaacatcatacataacatattaaaaca 11588330  T
Q  200 agtgcgctagaattttcaa 218  Q
    |||||||||||||||||||    
T  11588329 agtgcgctagaattttcaa 11588311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 11521505 - 11521717
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||| ||||||||||||| | |||||| | | ||||||||||||||||  ||| |||||||||||||||||||  ||||| ||||||||| |||    
T  11521505 ctacactagtagatttccttcctggcttggtagcccctagagtaggtgtgtttgtcaccaaactgggtcaacaaactcattgtgttatttactttcctgt 11521604  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||| ||||||||||| ||||| ||||||  |||||||||| ||  || | || ||||||  || || || |||||| |||| ||| |||||||||||    
T  11521605 catttactttcttgtttt-atttcagtttatcacgtgatgttgaaacattaatcgtaacattgcaaacgctgtaacatcatatataacttattaaaacaa 11521703  T
Q  201 gtgcgctagaattt 214  Q
    ||||||||||||||    
T  11521704 gtgcgctagaattt 11521717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 13455207 - 13455419
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| | ||||||||||||   |||  |||||||| ||| ||||||||||  |||||||||||||||||||    
T  13455207 ctacactagtggatttccttccttgcttggtagcccccagagtaggtgacgttgc-accgaactaggttaacaaactcattgtgttctttactttcttgt 13455305  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||| ||||||||| | ||||||||||  |||||||||||||  || |||| |||||   || |||| ||||||| || |||||||||||||||||    
T  13455306 catttattctcttgtttttagttctgtttataacgtgatgttggaacatttaacgtaacatcgaaaacgttaaaacatcatacagaacatattaaaacaa 13455405  T
Q  201 gtgcgctagaattt 214  Q
     |  ||||||||||    
T  13455406 atttgctagaattt 13455419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 645197 - 644985
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||| |||||||||||||||| | | |||| | ||| ||||||||||||||  || ||||||||| |||||| |||  ||||| ||||||||| |||    
T  645197 ctacactggtggatttccttcctggcttcgtagcccccatagtaggtgtgtttgtcactgaactgggttaacaaattcattgtgttatttactttcctgt 645098  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||||||||  |||||||||| ||  ||    | ||||||  || || | ||||||| || ||||| |||||||||||    
T  645097 catttattttcttgtttttatttctgtttatcgcgtgatgttgaaacattagttgtaacattgcaaacgattaaacatcatacagaacgtattaaaacaa 644998  T
Q  201 gtgcgctagaatt 213  Q
    |||||||||||||    
T  644997 gtgcgctagaatt 644985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 10279878 - 10279721
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttc-tttactttcttg 99  Q
    ||||||| ||| |||||||||||| | |||||| | ||||||||||||||||||   ||||||| ||||||||||||||  |||||| ||||||||||||    
T  10279878 ctacactggtgaatttccttcctggcttggtagcc-ccagagtaggtgtgtttgtcgccgaactaggtcaacaaactcattgtgttcctttactttcttg 10279780  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaac 159  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||||  || ||||||||    
T  10279779 tcatttactttcttgtttt-atttctgtttaattcgtgatgttggaagattgaacggaac 10279721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 12325848 - 12325676
Alignment:
Q  42 gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgt 141  Q
    |||||||||||||  ||||||||  |||||||||||||   ||||||||||||||  |||||||| ||||||||||| ||||||||||| ||| ||||||    
T  12325848 gtaggtgtgtttgtcaccgaactaagtcaacaaactcattttgttctttactttccagtcatttactttcttgtttttatttctgtttacttcatgatgt 12325749  T
Q  142 tggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
    |||||  || |||||||||||  ||  ||| ||||||| || ||||||| |||||||||||||  ||||||||    
T  12325748 tggaacattgaacggaacattgcaaatgttaaaacatcatacagaacatcttaaaacaagtgcattagaattt 12325676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26133009 - 26133118
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | || ||| | ||||||||||||| ||||  |||||||||||| ||||||||||  ||||  |||||||||||||    
T  26133009 ctacactagtggatttccttcctggcttgatagcccccagagtaggtgtctttgtcaccgaactgggttaacaaactcattgtgtcttttactttcttgt 26133108  T
Q  101 catttatttt 110  Q
    ||||||||||    
T  26133109 catttatttt 26133118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 10279712 - 10279620
Alignment:
Q  87 ctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatct 180  Q
    |||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||  || |||||||| |||||| |||||||||||||    
T  10279712 ctttactttcttgtcatttactttcttgttttg-tttctatttaattcgtgatgttggaagattgaacggaactttataaacgttgaaacatct 10279620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 14165186 - 14165017
Alignment:
Q  44 aggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgttg 143  Q
    |||||||||||  |||||||||| ||||||||||||  ||||| ||||||||| ||||||||| ||||||||||| ||||||||||||  | ||||||||    
T  14165186 aggtgtgtttgtcaccgaactggatcaacaaactcattgtgttatttactttcctgtcatttactttcttgtttt-atttctgtttatcgcatgatgttg 14165088  T
Q  144 gaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
     ||  || | |  ||||||| || ||| | |||||| ||  ||||  ||||||||||||| ||||||||||    
T  14165087 aaacattaatcacaacattacaaacgtcgtaacatcatacggaactaattaaaacaagtgtgctagaattt 14165017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 7586625 - 7586737
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||| ||||||  ||||||||||||||||||| |  | |||   |||||||||||||    
T  7586625 ctacactagtggatttccttcctggcttggtagcc-ccagagtaggtatgtttgtcaccgaactgggtcaacaaattgtctgtgccttttactttcttgt 7586723  T
Q  101 catttattttcttg 114  Q
    || |||||||||||    
T  7586724 caattattttcttg 7586737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10658447 - 10658338
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||||||||  || ||||||||| ||||||||  | |||   ||||||||||| |    
T  10658447 ctacactagtggatttccttcctggcttggtagcctccagagtaggtgtgtttgtcacggaactgggttaacaaacttgctgtgccttttactttcttct 10658348  T
Q  101 catttatttt 110  Q
    | ||||||||    
T  10658347 cttttatttt 10658338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 23956941 - 23956831
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||| ||||||| | |||||| ||| | ||||| ||||||||  |||||||| ||||||||||||| | |||   |||||||||||||    
T  23956941 ctacactagtggattttcttcctggcttggtagcctctaaagtagatgtgtttgtcaccgaactaggtcaacaaactctctgtgccttttactttcttgt 23956842  T
Q  101 catttattttc 111  Q
    | |||||||||    
T  23956841 cttttattttc 23956831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 24902170 - 24902059
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | | | | ||||||||||||  || ||||||||||||||||||  | |||   |||||||||||||    
T  24902170 ctacactagtggatttccttcctggcttggtagcccctataataggtgtgtttgtcactgaactgggtcaacaaact--ctgtgccttttactttcttgt 24902073  T
Q  101 catttattttcttg 114  Q
    |||||| |||||||    
T  24902072 catttactttcttg 24902059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9894161 - 9894214
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttg 54  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  9894161 ctacactagtggatttccttactgacttggtagtccccagagtaggtgtgtttg 9894214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 20925232 - 20925305
Alignment:
Q  41 agtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttg 114  Q
    |||||||||||||   |||||||||||||||||||||||  |||||||||||||| ||||  ||||||||||||    
T  20925232 agtaggtgtgtttatcaccgaactgggtcaacaaactcattgtgttctttacttttttgttttttattttcttg 20925305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 21260579 - 21260462
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtg-ttctttactttcttg 99  Q
    |||||||| ||||||| |||||| |  |||||| | ||||||||||||||||||  |||||||||| ||||||||||  | |||    ||||| ||||||    
T  21260579 ctacactaatggattttcttcctaagttggtagcccccagagtaggtgtgtttgtcaccgaactggatcaacaaactgtctgtgccattttaccttcttg 21260480  T
Q  100 tcatttattttcttgttt 117  Q
    ||||||||||||||||||    
T  21260479 tcatttattttcttgttt 21260462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42636311 - 42636235
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaact 77  Q
    |||||||||||||||||||||||  | |||||| ||||||||||||| ||||||  |||||||| ||| ||||||||    
T  42636311 ctacactagtggatttccttccttgcttggtagcctccagagtaggtatgtttgtcaccgaacttggttaacaaact 42636235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 7620144 - 7620066
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcac 80  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||   || | |||||||||||| |||||||||||    
T  7620144 ctacactagtggatttccttcctgacttggtagcctccaaagtaggtgacgtt-gcaccgaactgggttaacaaactcac 7620066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23057270 - 23057196
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaa 75  Q
    ||||||||||| |||||||||||| | |||||| |  |||||||||||||||||  |||||||||||| ||||||    
T  23057270 ctacactagtgaatttccttcctggcttggtagccctcagagtaggtgtgtttgtcaccgaactgggttaacaaa 23057196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10251504 - 10251431
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    |||||||||  ||||||||||||| | |||||| |||||||||||||||||||   |||||||||||| |||||    
T  10251504 ctacactagaagatttccttcctggcttggtagcctccagagtaggtgtgtttatcaccgaactgggttaacaa 10251431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14926711 - 14926596
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||| |||||||||| || | |||||| | ||||||||||||||| ||  ||| |||||||| ||||||||    |||   |||| ||||||||    
T  14926711 ctacactagtagatttccttcttggcttggtagcccccagagtaggtgtgtctgtcaccaaactgggttaacaaacttgttgtgccatttaatttcttgt 14926612  T
Q  101 catttattttcttgtt 116  Q
    |||||| |||||||||    
T  14926611 catttactttcttgtt 14926596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 15350177 - 15350062
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||| |||||||||| || | |||||| | ||||||||||||||| ||  ||| |||||||| ||||||||    |||   |||| ||||||||    
T  15350177 ctacactagtagatttccttcttggcttggtagcccccagagtaggtgtgtctgtcaccaaactgggttaacaaacttgttgtgccatttaatttcttgt 15350078  T
Q  101 catttattttcttgtt 116  Q
    |||||| |||||||||    
T  15350077 catttactttcttgtt 15350062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31269149 - 31269224
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaac 76  Q
    ||||||||||||||||||||| || | |||||| | || ||||||||| |||||  |||||||||||| |||||||    
T  31269149 ctacactagtggatttccttcatggcttggtagcccccggagtaggtgagtttgtcaccgaactgggttaacaaac 31269224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 20596919 - 20596993
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaa 75  Q
    |||||||||| |||||||||| || | |||||| | ||||||||||||||||||  |||||||| ||| ||||||    
T  20596919 ctacactagtcgatttccttcttggcttggtagcccccagagtaggtgtgtttgtcaccgaactcggttaacaaa 20596993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7508499 - 7508426
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    |||||||||||||||||||||||| | |||||| | | | ||||||||||||||  | |||||||||| |||||    
T  7508499 ctacactagtggatttccttcctggcttggtagccccaaaagtaggtgtgtttgtcatcgaactgggttaacaa 7508426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14687431 - 14687358
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    ||||||||||| |||||||||||  | |||||| ||||| ||||||||||||||  |||||||| ||| |||||    
T  14687431 ctacactagtgaatttccttcctagcttggtagcctccatagtaggtgtgtttgtcaccgaactaggttaacaa 14687358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 23082868 - 23082941
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    |||||||||||||||||||||||||| |||||| |   |||||||||||||||   ||| |||||||| |||||    
T  23082868 ctacactagtggatttccttcctgacttggtagcccgtagagtaggtgtgtttctcaccaaactgggttaacaa 23082941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 48797713 - 48797760
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtg 48  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||    
T  48797713 ctacactagtggatttccttcctggcttggtagcccccagagtaggtg 48797760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 9566914 - 9566852
Alignment:
Q  57 accgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttg 119  Q
    |||||||||||| ||||||||| | ||| | |||||||||||||| ||||||||  |||||||    
T  9566914 accgaactgggttaacaaactctctgtgctttttactttcttgtcttttatttttctgttttg 9566852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30226149 - 30226117
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtag 33  Q
    |||||||||||||||||||||||||| ||||||    
T  30226149 ctacactagtggatttccttcctgacttggtag 30226117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 13735069 - 13735282
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||| ||||||||||||||||| |||||  | ||||||||||||||||||  |||||| ||||||||||||||||| ||||  ||||||||| |||    
T  13735069 ctacactaatggatttccttcctgacttggtaacccccagagtaggtgtgtttgtcaccgaagtgggtcaacaaactcactgtgtcttttactttcctgt 13735168  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||  || ||||||||||||||| |||||||||||||   |||||||||||||||||    
T  13735169 catttattttcttgtttttatttctgtttacttcgtgatgttggaacattgaacggaacattataaacgttgaaacatctcgcagaacatattaaaacaa 13735268  T
Q  201 gtgcgctagaattt 214  Q
    || | |||||||||    
T  13735269 gttcactagaattt 13735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 26036872 - 26036677
Alignment:
Q  3 acactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtca 102  Q
    |||||||||||||||||||||| | |||||| | |||||||||||||||||   ||||||||||||||||||||||||  |||| |||||||||||||||    
T  26036872 acactagtggatttccttcctggcttggtagcccccagagtaggtgtgttttccaccgaactgggtcaacaaactcactttgttgtttactttcttgtca 26036773  T
Q  103 tttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaac 198  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||  |  |||| |||||||||| ||||||||||||||| |||||||||||||||    
T  26036772 tttattttcttatttttatttttgtttatttcgtgatgttggaacatcgaacgaaacattataaacgttgaaacatcttacagaacatattaaaac 26036677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 30605789 - 30605996
Alignment:
Q  4 cactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcat 103  Q
    |||||||||||||||||||||   |||||| | ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| |    
T  30605789 cactagtggatttccttcctggattggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcactgtgttctttactttcttgtctt 30605888  T
Q  104 ttattttcttg-ttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagt 202  Q
    ||| ||||||| |||| || |||||||||||||| |||||||||  || |||||||||||   | ||||||||||||||| |||||||||||||||||||    
T  30605889 tta-tttcttgttttttatctctgtttatttcgtaatgttggaacattgaacggaacatt---aacgttgaaacatcttacagaacatattaaaacaagt 30605984  T
Q  203 gcgctagaattt 214  Q
    ||| ||||||||    
T  30605985 gcgttagaattt 30605996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 9422565 - 9422776
Alignment:
Q  3 acactagtggatttccttcctgacgtggtagtctccaga-gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtc 101  Q
    |||||||||||||||||||||||| ||| |||| ||||| |||||||||||||  |||||||| ||||||||||||||  ||||||||||||||  ||||    
T  9422565 acactagtggatttccttcctgacttgg-agtccccagatgtaggtgtgtttgtcaccgaactaggtcaacaaactcattgtgttctttacttttctgtc 9422663  T
Q  102 atttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaag 201  Q
     |||||||||||||||| ||||||||||||   ||||||||||||   | |||||||||||  ||  ||| |||||||| | ||||||||||||||||||    
T  9422664 gtttattttcttgtttttatttctgtttatcatgtgatgttggaacactaaacggaacattgcaaatgttaaaacatctgacagaacatattaaaacaag 9422763  T
Q  202 tgcgctagaattt 214  Q
    ||| |||||||||    
T  9422764 tgcactagaattt 9422776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 26329309 - 26329522
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctc-cagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    |||||| ||||||||||||||||| | |||||| ||| ||||||||||||||||   |||||||||||||||||||||||| ||||| ||||| ||||||    
T  26329309 ctacaccagtggatttccttcctggcttggtag-ctcacagagtaggtgtgtttatcaccgaactgggtcaacaaactcactgtgtt-tttaccttcttg 26329406  T
Q  100 tcatttatttt-cttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaac 198  Q
    ||||||||||| |||||||| ||||||||||| ||| |||||||||||  || | |  |||||||||| ||| ||| ||||| || ||||||||||||||    
T  26329407 tcatttatttttcttgtttttatttctgtttacttcatgatgttggaacattgagcataacattataaacgtcgaaccatctcatggaacatattaaaac 26329506  T
Q  199 aagtgcgctagaattt 214  Q
    |||| |||||||||||    
T  26329507 aagtacgctagaattt 26329522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 25105516 - 25105730
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||||| |||||| | | || ||||||| | |||  |||||||||||||||||| ||||| |||||||||| |||| | |    
T  25105516 ctacactagtggatttccttcctgacttggtagcccctagtgtaggtgcgcttgtcaccgaactgggtcaacaagctcactgtgttctttagtttcctat 25105615  T
Q  101 cattta-ttttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    | |||| |||||||||||| ||||||||||||   ||||||||| ||  || | || ||||||  || ||  | |||||| || ||||||||||||||||    
T  25105616 cttttatttttcttgtttttatttctgtttatcgtgtgatgttgaaacattaatcgtaacattgcaaacgccgtaacatcatacagaacatattaaaaca 25105715  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  25105716 agtgcgctagaattt 25105730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 25164609 - 25164823
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||||| |||||| | | || ||||||| | |||  |||||||||||||||||| ||||| |||||||||| |||| | |    
T  25164609 ctacactagtggatttccttcctgacttggtagcccctagtgtaggtgcgcttgtcaccgaactgggtcaacaagctcactgtgttctttagtttcctat 25164708  T
Q  101 cattta-ttttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    | |||| |||||||||||| ||||||||||||   ||||||||| ||  || | || ||||||  || ||  | |||||| || ||||||||||||||||    
T  25164709 cttttatttttcttgtttttatttctgtttatcgtgtgatgttgaaacattaatcgtaacattgcaaacgccgtaacatcatacagaacatattaaaaca 25164808  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  25164809 agtgcgctagaattt 25164823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 22404861 - 22405070
Alignment:
Q  5 actagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatt 104  Q
    |||||||||||||||||||| | |||||| | | |||| |||||||||||  |||||||||||||||||||||||  ||||| ||||||||| | |||||    
T  22404861 actagtggatttccttcctggcttggtagcccctagagcaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttatttactttcctttcatt 22404960  T
Q  105 tattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgc 204  Q
    ||||||||||||||  |||||||||||  | |||||||| ||  || | || ||||||  ||  | ||||||||| || | ||| ||||||||||||||     
T  22404961 tattttcttgtttttgtttctgtttatcgcatgatgttgaaacattaatcgtaacattgcaaatgctgaaacatcatacataacctattaaaacaagtgt 22405060  T
Q  205 gctagaattt 214  Q
    ||||||||||    
T  22405061 gctagaattt 22405070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 13338654 - 13338543
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtc 101  Q
    ||||||||||||||||||||||| | |||||| | |||||||| |||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||    
T  13338654 tacactagtggatttccttcctggcttggtagcc-ccagagtatgtgtgtttgtcaccgaactgggttaacaaactcactgtgttctttactttcttgtc 13338556  T
Q  102 atttattttcttg 114  Q
     ||||||||||||    
T  13338555 ttttattttcttg 13338543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 24189926 - 24189809
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||| |||||||||| | | |||||| | |||||||| |||||||||  |||||||| ||||||||||||||| ||||||||||||||| |||    
T  24189926 ctacactagtgaatttccttcccggcttggtagcccccagagtatgtgtgtttgtcaccgaactaggtcaacaaactcactgtgttctttactttcctgt 24189827  T
Q  101 catttattttcttgtttt 118  Q
    | ||||||||||||||||    
T  24189826 cttttattttcttgtttt 24189809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 18221174 - 18220976
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| || | |||||| | ||| ||||||||||||||  |||||||||| ||||||||||||   ||||||||||||||||||    
T  18221174 ctacactagtggatttccttcttggcttggtagaccccaaagtaggtgtgtttgtcaccgaactggatcaacaaactcatcttgttctttactttcttgt 18221075  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
                   ||| ||||||||||| |||||||||||||||  || ||||||||||||||| | |||||||||||||   ||| | |||||||||    
T  18221074 ---------------ttttatttctgtttaattcgtgatgttggaacattgaacggaacattataaacattgaaacatcttacgaaactttttaaaacaa 18220990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 23420657 - 23420787
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| |   ||||||||||| ||||  |||||||||||||| ||||||||  ||| || |||||||| |||    
T  23420657 ctacactagtggatttccttcctagcttggtagcccttagagtaggtgtatttgtcaccgaactgggtcagcaaactcattgtgctccttactttcctgt 23420756  T
Q  101 catttattttcttgttttgatttctgtttat 131  Q
    |||||||||||||||||| ||||||| ||||    
T  23420757 catttattttcttgtttttatttctgcttat 23420787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 13942093 - 13942207
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcaca-gtgttctttactttcttg 99  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||||||||  |||||||| ||| ||| ||||| || |||   ||||||||||||    
T  13942093 ctacactagtggatttccttcctgacttggtagcccccagagtaggtgtgtttgtcaccgaactaggttaac-aactctcatgtgccatttactttcttg 13942191  T
Q  100 tcatttattttcttgt 115  Q
    ||||||||||||||||    
T  13942192 tcatttattttcttgt 13942207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 20714832 - 20714942
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||| |||||| |||||| |  |||||||||||||||||  |||||||| |||||||||||||||  |||  ||||| |||||||    
T  20714832 ctacactagtggatttcctacctgacttggtagccctcagagtaggtgtgtttgtcaccgaactaggtcaacaaactcactatgtcttttacattcttgt 20714931  T
Q  101 catttattttc 111  Q
    | |||||||||    
T  20714932 cgtttattttc 20714942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 23623941 - 23623831
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||    | |||| | ||||||||||||||||||  |||||| | ||||||||||||||  |||||||||||||||||||    
T  23623941 ctacactagtggatttccttcctaggttagtagcccccagagtaggtgtgtttgtcaccgaaataggtcaacaaactcattgtgttctttactttcttgt 23623842  T
Q  101 catttattttc 111  Q
      |||||||||    
T  23623841 attttattttc 23623831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 20845890 - 20846018
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||||| |||||| | ||| ||||||||   |||  |||||||||||| |||||||||   |||   ||||||||| |||    
T  20845890 ctacactagtggatttccttcctgacttggtagcccccatagtaggtgacgttgc-accgaactgggttaacaaactctgtgtgccttttactttcctgt 20845988  T
Q  101 catttattttcttgttttgatttctgttta 130  Q
    |||||||||||||||||| |||| ||||||    
T  20845989 catttattttcttgtttttatttttgttta 20846018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 7898010 - 7898103
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttacttt 95  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||   || | |||||||||||| ||||||||||| ||||  ||||||||    
T  7898010 ctacactagtggatttccttcctggcttggtagcctccagagtaggtgacgtt-gcaccgaactgggttaacaaactcactgtgtcttttacttt 7898103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 22130931 - 22131046
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtc 101  Q
    |||||||||||||||||| |||| | |||||| | ||||||||||||   |||  |||||||||||| ||||||||| | ||| | ||||||||||||||    
T  22130931 tacactagtggatttcct-cctggcttggtagcccccagagtaggtgacgttgc-accgaactgggttaacaaactctctgtgctttttactttcttgtc 22131028  T
Q  102 atttattttcttgttttg 119  Q
     ||||||||  |||||||    
T  22131029 ttttattttgctgttttg 22131046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24117659 - 24117586
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    ||||||||||||||||| |||||| | |||||| | |||||||||| |||||||  |||||||||||| |||||    
T  24117659 ctacactagtggatttcattcctggcttggtagccaccagagtaggcgtgtttgtcaccgaactgggttaacaa 24117586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20498249 - 20498332
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgt 85  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||||||   || | |||||||||||| |||||| |||| ||||    
T  20498249 ctacacgagtggatttccttcctgacttggtagcctccagagtaggtgacgtt-gcaccgaactgggttaacaaattcactgtgt 20498332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 17661508 - 17661583
Alignment:
Q  3 acactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactc 78  Q
    ||||||||| |||||||||| | | |||||| | ||| ||||||||||||||  |||||||||||| |||||||||    
T  17661508 acactagtgaatttccttccaggcttggtagcccccatagtaggtgtgtttgtcaccgaactgggttaacaaactc 17661583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 11667957 - 11668169
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||| ||||||||||||| | |||||| | |||||||||||||||||   | |||||||||||||||||||||| ||||||||||||||||| |    
T  11667957 ctacactagtagatttccttcctggcttggtagcccccagagtaggtgtgtttctcatcgaactgggtcaacaaactcactgtgttctttactttctttt 11668056  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||  || ||||||||||| ||| ||||||||||||||| | |||||||||||||||    
T  11668057 catttattttcttgtttttatttatgtttattttttgatgttggaacattgaacggaacattgtaaacgttgaaacatcttaca-aacatattaaaacaa 11668155  T
Q  201 gtgcgctagaattt 214  Q
    ||||||||||||||    
T  11668156 gtgcgctagaattt 11668169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1973377 - 1973166
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||||| |||||  | |||||||||| |||||||  ||||||||||||||||||||||||  ||||||||| ||||||||    
T  1973377 ctacactagtggatttccttcctgacttggtatcccccagagtaggagtgtttgtcaccgaactgggtcaacaaactcaccatgttctttattttcttgt 1973278  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||| ||||||||||| ||||||| ||| |||| ||||||||||  || || |||||||||||| | ||||| ||||||| | ||||| |||||| ||    
T  1973277 catttactttcttgtttttatttctg-ttaattcgcgatgttggaacattgaatggaacattataaacattgaagcatcttacaaaacattttaaaataa 1973179  T
Q  201 gtgcgctagaatt 213  Q
    || ||||||||||    
T  1973178 gtacgctagaatt 1973166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4246099 - 4245882
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||    
T  4246099 ctacactagtggatttccttcctgtcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctgt 4246000  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||| ||||  |||||||||| ||  || | |  ||||||  || |||  ||||||| || | |||||||||||||||    
T  4245999 catttattttcttgtttttatttctgcttatcgcgtgatgttgaaacattaatcataacattgcaaacgtcaaaacatcatacataacatattaaaacaa 4245900  T
Q  201 gtgcgctagaattttcaaa 219  Q
    ||| ||||| |||||||||    
T  4245899 gtgtgctag-attttcaaa 4245882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 26972495 - 26972707
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||| ||| | |||||| | ||||||||||||||||||  |||||||||||||||||||||||  |||||||||| || | |||    
T  26972495 ctacactagtggatttccttactggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttaattacctgt 26972594  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | |||||||||||||||| ||| ||||||||  |  ||||||| ||  || | || |||| |  || ||||| |||||| || |||||||||||||||||    
T  26972595 cttttattttcttgtttttattactgtttatcgccggatgttgaaacattaatcgtaaca-tcgaaacgttgtaacatcatacagaacatattaaaacaa 26972693  T
Q  201 gtgcgctagaattt 214  Q
    ||||||||||||||    
T  26972694 gtgcgctagaattt 26972707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 20859641 - 20859779
Alignment:
Q  5 actagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatt 104  Q
    |||||||||||||||||||| | |||||| | ||||||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||||||| ||    
T  20859641 actagtggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaaatcattgtgttctttactttcttgtcgtt 20859740  T
Q  105 tattttcttgttttgatttctgtttatttcgtgatgttg 143  Q
    |||||||||||||| | ||  ||||||  ||||||||||    
T  20859741 tattttcttgtttttactttcgtttatcgcgtgatgttg 20859779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 14745877 - 14746007
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||| ||||||| | |||||| | ||||||| ||||||||||  ||||| |||||||||||||||| | ||||| ||||||||| |||    
T  14745877 ctacactagtggattttcttcctggcttggtagcccccagagttggtgtgtttgtcaccgagctgggtcaacaaactcgctgtgttatttactttcctgt 14745976  T
Q  101 catttattttcttgttttgatttctgtttat 131  Q
    ||||||||||||||||||  |||||||||||    
T  14745977 catttattttcttgtttttgtttctgtttat 14746007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 17851467 - 17851577
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| || | | |||| | ||||||||||||||||||  |||||||| ||||||||||||||| ||||||| |||||||||||    
T  17851467 ctacactagtggatttccttcttggcttagtagcccccagagtaggtgtgtttgtcaccgaactaggtcaacaaactcactgtgttctatactttcttgt 17851566  T
Q  101 catttattttc 111  Q
    |||||||||||    
T  17851567 catttattttc 17851577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 23478029 - 23478189
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||||||||  || ||||| ||||||||||||||| |||   |||||||||||||    
T  23478029 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcactgaactaggtcaacaaactcactgtgccatttactttcttgt 23478128  T
Q  101 cattta-ttttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacat 161  Q
    |||||| |||||||||||| | ||||||||| |   |||||||||||  || ||||||||||    
T  23478129 catttatttttcttgttttta-ttctgtttactgtatgatgttggaacattaaacggaacat 23478189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 9452117 - 9451992
Alignment:
Q  88 tttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaa 187  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||  |||||||||||||  || | || ||||||  || |||| ||||||| |||||||    
T  9452117 tttactttcctgtcatttattttcttgtttttatttctgcttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaa 9452018  T
Q  188 catattaaaacaagtgcgctagaattt 214  Q
    ||| |||||||||||||||||||||||    
T  9452017 cat-ttaaaacaagtgcgctagaattt 9451992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 13165458 - 13165248
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| | ||| |||||||||  |||  ||||||||| ||||||||||| |  ||||||||||||||| | |    
T  13165458 ctacactagtggatttccttcctagcttggtagcc-ccacagtaggtgt--ttgtcaccgaactgagtcaacaaacttattgtgttctttactttcctat 13165362  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | |||||||||||||||| | ||||||||||  |||||||||| ||  || | |  |||||   || |||| ||||||| || ||||| |||||||||||    
T  13165361 cttttattttcttgtttttaattctgtttatcgcgtgatgttgtaacattaatcataacatcgcaaacgttaaaacatcatacagaacgtattaaaacaa 13165262  T
Q  201 gtgcgctagaattt 214  Q
    ||| ||||||||||    
T  13165261 gtgtgctagaattt 13165248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 20841359 - 20841500
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| |   | ||||||||||||||  ||||||||   ||||||||||||  |||||||||||||||||||    
T  20841359 ctacactagtggatttccttcctggcttggtagcccatatagtaggtgtgtttgtcaccgaactatttcaacaaactcattgtgttctttactttcttgt 20841458  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgtt 142  Q
      |||||||| ||||||| | || |||||||  |||||||||    
T  20841459 tgtttatttttttgtttttacttttgtttatcgcgtgatgtt 20841500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10340251 - 10340364
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||| |||||||||||||||||||| | |||| | |||||||||||||  ||| ||||||||||||||||||||||  | |||   ||||||||| |||    
T  10340251 ctacaatagtggatttccttcctgacttagtagcccccagagtaggtgtacttgttaccgaactgggtcaacaaactttctgtgccttttactttcctgt 10340350  T
Q  101 catttattttcttg 114  Q
    | ||||||||||||    
T  10340351 cttttattttcttg 10340364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17379717 - 17379790
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||||||||  |||||||||||| |||||    
T  17379717 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggttaacaa 17379790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 41330897 - 41331009
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtc 101  Q
    ||||||||||| ||| ||||||| | | |||| | ||| ||||||||||||||  ||||||||||||||||||||||   |||   ||||| ||||||||    
T  41330897 tacactagtggttttacttcctggcttagtagcccccaaagtaggtgtgtttgtcaccgaactgggtcaacaaactctttgtgccttttacattcttgtc 41330996  T
Q  102 atttattttcttg 114  Q
    |||||||||||||    
T  41330997 atttattttcttg 41331009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12753125 - 12753016
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||| ||||||||||| ||||||| | |||||| |||||||||||||||||||   |||||||||||| ||||||||    |||   |||||||||||||    
T  12753125 ctacgctagtggatttacttcctggcttggtagcctccagagtaggtgtgtttctcaccgaactgggttaacaaacttgttgtgccttttactttcttgt 12753026  T
Q  101 catttatttt 110  Q
    | ||||||||    
T  12753025 cttttatttt 12753016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 18390200 - 18390273
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaa 75  Q
    ||||||||||||||||||| ||| | |||||| | ||||||||||||||||||  |||||||||||| ||||||    
T  18390200 tacactagtggatttccttactggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggttaacaaa 18390273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15804205 - 15804314
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||| |||| ||||||| | |||||| | ||| ||||||||||||||  || ||||||||| ||||||||| | |||   ||||| || ||||    
T  15804205 ctacactagtgaattttcttcctggcttggtagcccccatagtaggtgtgtttgtcactgaactgggttaacaaactcgctgtgccatttacctttttgt 15804304  T
Q  101 catttatttt 110  Q
    ||||||||||    
T  15804305 catttatttt 15804314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 17038310 - 17038203
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||| |||| | |||||| | ||||||||||||   |||  |||||||||||| ||||||||  | ||||| |||||||||||||    
T  17038310 ctacactagtggatttcct-cctggcttggtagcccccagagtaggtgacgttgc-accgaactgggttaacaaacttcctgtgttttttactttcttgt 17038213  T
Q  101 catttatttt 110  Q
    | ||||||||    
T  17038212 cttttatttt 17038203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17355925 - 17355998
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    ||||||| |||||||||||||| | | |||||| | ||||||||||||||||||  |||||||||||| |||||    
T  17355925 ctacactggtggatttccttccaggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggttaacaa 17355998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17012066 - 17012019
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtg 48  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||    
T  17012066 ctacactagtggatttccttcctggcttggtagcccccagagtaggtg 17012019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8281984 - 8281911
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    ||||| |||||| ||||||||||| | |||| | |||| |||||||||||||||  |||||||| ||| |||||    
T  8281984 ctacaatagtgggtttccttcctggcttggtcgcctccggagtaggtgtgtttgtcaccgaactaggttaacaa 8281911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 47941434 - 47941551
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccaga-gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    ||||||||||||||||||||| |||| | ||||   ||||| ||||||| |||  || ||||| ||||| |||||||| || |||   ||||||||||||    
T  47941434 ctacactagtggatttccttcttgactttgtagctcccagatgtaggtgagtt--gtgccgaattgggttaacaaacttactgtgccttttactttcttg 47941531  T
Q  100 tcatttattttcttgttttg 119  Q
    || ||||||||  |||||||    
T  47941532 tcttttattttgctgttttg 47941551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10724323 - 10724110
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||| |||||||||||| | | |||| | ||| ||||||||||||||  |||||||| ||||||||||||||| || ||||||| ||||||||    
T  10724323 ctacactagtgaatttccttcctggctttgtagcccccaaagtaggtgtgtttgtcaccgaactaggtcaacaaactcactgtattctttaatttcttgt 10724224  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||  || |||||||||||  || || | |||||||||| | |||||||||||||||    
T  10724223 catttattttcttgtttttatttctgtttattttgtgatgttggaacattgaacggaacattccaaacggtaaaacatcttacaaaacatattaaaacaa 10724124  T
Q  201 gtgcgctagaattt 214  Q
    ||||| ||||||||    
T  10724123 gtgcgttagaattt 10724110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10938092 - 10937879
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||| |||||||||||| | | |||| | ||| ||||||||||||||  |||||||| ||||||||||||||| || ||||||| ||||||||    
T  10938092 ctacactagtgaatttccttcctggctttgtagcccccaaagtaggtgtgtttgtcaccgaactaggtcaacaaactcactgtattctttaatttcttgt 10937993  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||  || |||||||||||  || || | |||||||||| | |||||||||||||||    
T  10937992 catttattttcttgtttttatttctgtttattttgtgatgttggaacattgaacggaacattccaaacggtaaaacatcttacaaaacatattaaaacaa 10937893  T
Q  201 gtgcgctagaattt 214  Q
    ||||| ||||||||    
T  10937892 gtgcgttagaattt 10937879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10190950 - 10190737
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||| |||||||||||||||| | |||||| | ||||||||||||||||||  |||||||||||||||||||||||  || |||||||||||| |||    
T  10190950 ctacactggtggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgttttctttactttcctgt 10190851  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| |||| |||||||  | |||||||| ||  || | |  ||||||  ||  | ||||||||| || |||||||||||||||||    
T  10190850 catttattttcttgtttttatttttgtttatcgcttgatgttgaaacattaatcttaacattgcaaatgctgaaacatcatacagaacatattaaaacaa 10190751  T
Q  201 gtgcgctagaattt 214  Q
    ||||||||||||||    
T  10190750 gtgcgctagaattt 10190737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21478171 - 21477959
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||| |||||||||||| | |||||| ||||||||||||||   |||  |||||||||||| ||||||||||| |||||||||||||||||||    
T  21478171 ctacactagtgtatttccttcctggcttggtagcctccagagtaggtgacgttgc-accgaactgggttaacaaactcaccgtgttctttactttcttgt 21478073  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||| ||||  |||||||||||||  || || |  |||| | || | || ||||||| || ||||| |||||||||||    
T  21478072 catttattttcttgtttttatttctggttatcgcgtgatgttggaacattgaatgtgacatcacaaacattaaaacatcatacagaacgtattaaaacaa 21477973  T
Q  201 gtgcgctagaattt 214  Q
    ||||||||||||||    
T  21477972 gtgcgctagaattt 21477959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 8163790 - 8163633
Alignment:
Q  57 accgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacgg 156  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||||||||  || ||||     
T  8163790 accgaactgggttaacaaactcactgtgttctttactttcttgtcatttattttcttgtttttatttttgtttatcgcgtgatgttggaacattgaacgt 8163691  T
Q  157 aacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
    ||||| |||| |||| ||||||| || | ||| |||||||||||||||||||||||||    
T  8163690 aacatcataaacgttaaaacatcatacataacgtattaaaacaagtgcgctagaattt 8163633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 16383954 - 16383740
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | ||| || | ||||||||||||||||||  |||||||| ||||||||| ||||  |||||||||| |||| |||    
T  16383954 ctacactagtggatttccttcctggcttggaagcccccagagtaggtgtgtttgtcaccgaactaggtcaacaatctcattgtgttctttaatttcctgt 16383855  T
Q  101 catttattttcttg-ttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    | |||||||||||| |||| ||||||||||||  |||||||||| ||  || | || ||||||| || ||    ||||||||| ||||||||||||||||    
T  16383854 cttttattttcttgttttttatttctgtttatcgcgtgatgttgaaacattaatcgtaacattacaaacgccataacatcttacagaacatattaaaaca 16383755  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  16383754 agtgcgctagaattt 16383740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25116889 - 25116674
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggt--agtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttctt 98  Q
    |||||||||||||||||||||||| | ||||  || | ||||||||||||||||||  ||||||||||||||| |||||||  ||||||||||||||| |    
T  25116889 ctacactagtggatttccttcctggcttggtgtagcccccagagtaggtgtgtttgtcaccgaactgggtcaataaactcattgtgttctttactttcct 25116790  T
Q  99 gtcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaac 198  Q
    ||| ||||||||||| |||| ||||||||||||  |||||||||| ||  || | || |||||| |||  | ||||||||  || ||||| |||||||||    
T  25116789 gtcgtttattttcttatttttatttctgtttatcgcgtgatgttgaaacattaatcgtaacattgtaaatgctgaaacattatacagaacgtattaaaac 25116690  T
Q  199 aagtgcgctagaattt 214  Q
    ||||| ||||||||||    
T  25116689 aagtgtgctagaattt 25116674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 15700406 - 15700605
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctcca-gagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    |||||||||||||||||||||||| | |||||| | ||| |||||||||||||||  |||||||||||||||||||||||| |||||||||||           
T  15700406 ctacactagtggatttccttcctggcttggtagcccccaagagtaggtgtgtttgtcaccgaactgggtcaacaaactcactgtgttctttac------- 15700498  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
            ||||||||||| ||||||||||| |||||||||||||||  || |||  |||||||||| | ||||||||||||| | ||||| ||||||||    
T  15700499 --------tttcttgtttttatttctgtttaattcgtgatgttggaacattgaacaaaacattataaacattgaaacatcttacaaaacattttaaaaca 15700590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 15162583 - 15162796
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| ||   ||| || | ||||||||||||||||||  |||||||| |||||||||||| |  ||||  ||||||||| ||     
T  15162583 ctacactagtggatttccttcttgggttggcagcccccagagtaggtgtgtttgtcaccgaactaggtcaacaaacttattgtgtcttttactttcctgc 15162682  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| |||||||||||     |||||||||||  || | || |||||   || ||||||||||||||| | |||||||||||||||    
T  15162683 catttattttcttgtttttatttctgtttacactatgatgttggaacattaatcgaaacatcgcaaacgttgaaacatcttacataacatattaaaacaa 15162782  T
Q  201 gtgcgctagaattt 214  Q
    ||  ||||||||||    
T  15162783 gtatgctagaattt 15162796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 33899084 - 33899193
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||| ||||||||| ||||||||| |||||| | | ||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||    
T  33899084 ctacaccagtggattttcttcctgacttggtagcccctagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctgt 33899183  T
Q  101 catttatttt 110  Q
    ||||||||||    
T  33899184 catttatttt 33899193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18618212 - 18618321
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||| ||||||  |||||  ||| |||||||||||||  ||||||||||||||||||    
T  18618212 ctacactagtggatttccttcctggcttggtagcccccagagtaggtatgtttgtcaccgacttggctcaacaaactcactatgttctttactttcttgt 18618311  T
Q  101 catttatttt 110  Q
    | ||||||||    
T  18618312 cgtttatttt 18618321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 28019368 - 28019250
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| || | |||||| | |||||| | |||||||||  |||||||||||||||||||||||  ||||| ||||||||| |||    
T  28019368 ctacactagtggatttccttcttggcttggtagcccccagagcatgtgtgtttgtcaccgaactgggtcaacaaactcattgtgttatttactttcctgt 28019269  T
Q  101 cattta-ttttcttgtttt 118  Q
    |||||| ||||||| ||||    
T  28019268 catttacttttcttctttt 28019250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9069009 - 9068933
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaact 77  Q
    |||||||||||||||||||||||  | |||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  9069009 ctacactagtggatttccttcctcgcttggtagcctccagagtaggtgtgtttgttaccgaactgggttaacaaact 9068933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13399399 - 13399512
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||| ||||||| | |||||| | | ||||||||||||||||  |||||||||||||||||||||||| ||    |||| ||||||||    
T  13399399 ctacactagtggattttcttcctggcttggtagcccctagagtaggtgtgtttgtcaccgaactgggtcaacaaactcactgtaccatttaatttcttgt 13399498  T
Q  101 catttattttcttg 114  Q
    || ||| |||||||    
T  13399499 caattactttcttg 13399512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 23400290 - 23400497
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| |       ||||||||||||  |||||||| ||||||||||||||  ||||||||||||||| |||    
T  23400290 ctacactagtggatttccttcctggcttggtagccc------taggtgtgtttgtcaccgaactaggtcaacaaactcattgtgttctttactttcatgt 23400383  T
Q  101 cattta-ttttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    | |||| |||||||||||| |||| || ||||  |||||||||| ||  || | |  ||||||| ||  |  | |||||| || ||| ||||||||||||    
T  23400384 cttttatttttcttgtttttatttatg-ttatcacgtgatgttgaaacattaatcataacattacaaatgccgtaacatcatacagagcatattaaaaca 23400482  T
Q  200 agtgcgctagaattt 214  Q
    |||| ||||||||||    
T  23400483 agtgtgctagaattt 23400497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33738047 - 33737973
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaa 75  Q
    |||||||||||||||||||||||| | |||||| ||||| ||||||||||||||  |||||||||||| ||||||    
T  33738047 ctacactagtggatttccttcctggcttggtagcctccatagtaggtgtgtttgtcaccgaactgggttaacaaa 33737973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 41785498 - 41785385
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| || | |||||| | ||  |||| |||||||||  || ||||||||||||||||||| |  ||   |||||||||||||    
T  41785498 ctacactagtggatttccttcttggcttggtagcccccgtagtatgtgtgtttgtcacagaactgggtcaacaaactctctatgcattttactttcttgt 41785399  T
Q  101 catttattttcttg 114  Q
    ||||||||||||||    
T  41785398 catttattttcttg 41785385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32861711 - 32861637
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaa 75  Q
    |||||||||||||||| ||||||||| |||||| | | ||||||||||||||||  |||||||||| ||||||||    
T  32861711 ctacactagtggattttcttcctgacttggtagcccctagagtaggtgtgtttgtcaccgaactggatcaacaaa 32861637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 23541307 - 23541229
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcac 80  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||   || | |||||||||||| |||||||||||    
T  23541307 ctacactagtggatttccttcctggcttggtagcctccagagtaggtgacgtt-gcaccgaactgggttaacaaactcac 23541229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50907915 - 50907840
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaac 76  Q
    |||||||||||||||| ||||||||| |||||| |  |||||||||||||||||  ||||||||| || |||||||    
T  50907915 ctacactagtggattttcttcctgacttggtagccctcagagtaggtgtgtttgtcaccgaactgagttaacaaac 50907840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25354731 - 25354824
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttacttt 95  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||   || | |||||||||||| ||||||||||| ||||  ||||||||    
T  25354731 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgacgtt-gcaccgaactgggttaacaaactcactgtgtcatttacttt 25354824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 33746027 - 33745918
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| ||||| ||||||||| ||||  ||||||||| || ||||||||    |||   |||||||||||||    
T  33746027 ctacactagtggatttccttcctagcttggtagcctccatagtaggtgtttttgtcaccgaactgtgttaacaaacttgttgtgccttttactttcttgt 33745928  T
Q  101 catttatttt 110  Q
    | ||||||||    
T  33745927 cttttatttt 33745918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22555033 - 22554950
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgt 85  Q
    |||||||||||||||||||||||| | |||||| || |||||||||||   || | |||||||||||| ||||||||||| ||||    
T  22555033 ctacactagtggatttccttcctggcttggtagccttcagagtaggtgacgtt-gcaccgaactgggttaacaaactcactgtgt 22554950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24143198 - 24143151
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtg 48  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||    
T  24143198 ctacactagtggatttccttcctgacttggtagcccccagagtaggtg 24143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2679913 - 2679839
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaa 75  Q
    ||||| ||||||||||||||||| || |||| | | ||||||||||||||||||  |||| ||||||| ||||||    
T  2679913 ctacaatagtggatttccttcctaacttggttgcccccagagtaggtgtgtttgtcaccgtactgggttaacaaa 2679839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11325241 - 11325288
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtg 48  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||||    
T  11325241 ctacactagtggatttccttcctggcttggtagcctccagagcaggtg 11325288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19659502 - 19659432
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaa 71  Q
    |||||||||||||||||||||||| | |||| | | ||||  ||||||||||||  |||||| ||||||||    
T  19659502 ctacactagtggatttccttcctggcttggtggcccccagcttaggtgtgtttgtcaccgaattgggtcaa 19659432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10198346 - 10198418
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    ||||||| |||||||||||||||| | |||||| | | ||||||||||||||||  |||||||| ||| |||||    
T  10198346 ctacactggtggatttccttcctggcttggtag-ccctagagtaggtgtgtttgtcaccgaactaggttaacaa 10198418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 33899448 - 33899492
Alignment:
Q  171 tgaaacatcttatagaacatattaaaacaagtgcgctagaatttt 215  Q
    ||||||||| || ||||| |||||||||||||| |||||||||||    
T  33899448 tgaaacatcatacagaacctattaaaacaagtgtgctagaatttt 33899492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 8465799 - 8465975
Alignment:
Q  37 ccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgt 136  Q
    ||||||||||||||||||  |||||| ||||||||||||||||  ||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||    
T  8465799 ccagagtaggtgtgtttgtcaccgaaatgggtcaacaaactcattgtgttctttactttcctgtcatttactttcttgtttttatttcagtttatttcgt 8465898  T
Q  137 gatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaatt 213  Q
    ||||||||||  || |||||||||||  || |||| ||||||| |||||||||||||||||||||||||||||||||    
T  8465899 gatgttggaacattgaacggaacattgcaaacgttaaaacatcatatagaacatattaaaacaagtgcgctagaatt 8465975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 20558365 - 20558153
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| ||||||| ||||||   |||  |||||||||||| ||||||||||| |||||||||||||||||||    
T  20558365 ctacactagtggatttccttcctggcttggtagcctccagactaggtgacgttgc-accgaactgggttaacaaactcactgtgttctttactttcttgt 20558267  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||  || |||| |||||   || |||| ||||||| || | |||||||||||||||    
T  20558266 catttattttcttgtttttatttctgtttatcgcgtgatgttggaacattgaacgtaacatcgcaaacgttaaaacatcatacataacatattaaaacaa 20558167  T
Q  201 gtgcgctagaattt 214  Q
    ||||||| ||||||    
T  20558166 gtgcgctcgaattt 20558153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 12039777 - 12039990
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||  ||||||||||||  | |||||| | ||| |||||||||||| |  |||||||| ||||||||||||||  |||||||||||||||||||    
T  12039777 ctacactagaagatttccttcctagcttggtagcccccaaagtaggtgtgttcgtcaccgaactaggtcaacaaactcattgtgttctttactttcttgt 12039876  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | |||||||||||||||| |||||||||||| ||||||| ||||||  || |||| ||||||  || |||| ||||||| | ||||||||||||||||||    
T  12039877 cgtttattttcttgtttttatttctgtttatctcgtgatattggaacattgaacgaaacattgcaaacgttaaaacatcgtgtagaacatattaaaacaa 12039976  T
Q  201 gtgcgctagaattt 214  Q
    ||| ||||||||||    
T  12039977 gtgtgctagaattt 12039990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25805517 - 25805304
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||||||||||||  ||||| |||| | |||||| |||  ||||||||||||||| |||    
T  25805517 ctacactagtggatttccttcctggcttggtagcctctagagtaggtgtgtttgtcaccgatctggtttaacaaaatcattgtgttctttactttcctgt 25805418  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||| ||||||||||| |||||| |||||   | ||||||| ||  || |||| |||||||||| || | ||||||| || |||||||||||||||||    
T  25805417 catttactttcttgtttttatttctttttatcaagcgatgttgaaacattgaacgaaacattataaacgcttaaacatcatacagaacatattaaaacaa 25805318  T
Q  201 gtgcgctagaattt 214  Q
    ||||| ||||||||    
T  25805317 gtgcgatagaattt 25805304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 20470299 - 20470443
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtc 101  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||||| |||   ||||||||||||||||||||||   |||||||||||||| ||||    
T  20470299 tacactagtggatttccttcctggcttggtagcctccagagtaggtgtgattgtcgccgaactgggtcaacaaactcattatgttctttactttcctgtc 20470398  T
Q  102 atttattttcttgttttgatttctgtttatttcgtgatgttggaa 146  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  20470399 atttattttcttgttttaaattctatttatttcgtgatgttggaa 20470443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25782875 - 25782661
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacag-tgttctttactttcttg 99  Q
    |||||||||||||||||||| ||| | |||||| ||||||||||||||||||||  |||||||||||| ||||||||||| | ||||||| | |||| ||    
T  25782875 ctacactagtggatttccttactggcttggtagcctccagagtaggtgtgtttgtcaccgaactgggttaacaaactcactgttgttcttaaatttcctg 25782776  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    ||||||| ||||||||||| |||||||||||| ||| ||||||| |   || || | ||||||| ||  | | ||||||| || | ||||||||||||||    
T  25782775 tcatttactttcttgtttttatttctgtttatctcgcgatgttgaagcattgaatgaaacattacaaatgcttaaacatcgtacataacatattaaaaca 25782676  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  25782675 agtgcgctagaattt 25782661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 15897769 - 15897982
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| | ||||||||||||||||||  |||||||||||||||||||||||   ||||||||||||||||||    
T  15897769 ctacactagtggatttccttcctagcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattttgttctttactttcttgt 15897868  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | ||||||||||| |||| | ||||||||||  |||||||||| ||  || |||  ||||||  |  |||| ||||||| || | |||||||||||||||    
T  15897869 cttttattttcttatttttacttctgtttatcgcgtgatgttgaaaccttgaacaaaacattgcatacgttaaaacatcgtacataacatattaaaacaa 15897968  T
Q  201 gtgcgctagaattt 214  Q
    ||| | ||||||||    
T  15897969 gtgtgttagaattt 15897982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20989860 - 20990073
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||| ||||| |||||| | ||||||||||||||| ||  |||||||||||||||||||||||  ||||| |||||||||   |    
T  20989860 ctacactagtggatttcctttctgacttggtagcccccagagtaggtgtgtctgtcaccgaactgggtcaacaaactcattgtgttatttactttcccat 20989959  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||  ||||   ||||||||||||  || | |||||||||  ||  | | ||||||| || |||||||||||||||||    
T  20989960 catttattttcttgtttttatttctacttatcgtgtgatgttggaacattgatcggaacattgcaaatgctaaaacatcatacagaacatattaaaacaa 20990059  T
Q  201 gtgcgctagaattt 214  Q
    ||| ||||||||||    
T  20990060 gtgagctagaattt 20990073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 33665857 - 33665644
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | | |||| | ||||||||||||||||||  |||||||| ||||||||||||||  ||||| ||||||||| | |    
T  33665857 ctacactagtggatttccttcctggcttagtagcccccagagtaggtgtgtttgtcaccgaactaggtcaacaaactcattgtgttatttactttcctat 33665758  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||||||||   ||||||||  ||  || | || ||||||  || |   | |||||| || |||||||||||||||||    
T  33665757 catttattttcttgtttttatttctgtttatcgtgtgatgttaaaacattaatcgtaacattgcaaacaccgtaacatcatacagaacatattaaaacaa 33665658  T
Q  201 gtgcgctagaattt 214  Q
    ||||||||||||||    
T  33665657 gtgcgctagaattt 33665644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13195387 - 13195245
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| || | |||||| | | ||||||||||||||||  | |||||| ||||||||||||||  ||||||||||||||| |||    
T  13195387 ctacactagtggatttccttcatggcttggtagcccctagagtaggtgtgtttgtcatcgaactaggtcaacaaactcattgtgttctttactttcctgt 13195288  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttg 143  Q
    |||||||||||||||||| |||| |||||||| ||||||||||    
T  13195287 catttattttcttgtttttatttatgtttattgcgtgatgttg 13195245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 14258974 - 14258761
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| | ||| |||||||||||||   |||||||||||||||||||||||  ||||||||||||||| | |    
T  14258974 ctacactagtggatttccttcctcgcttggtagcccccaaagtaggtgtgtttctcaccgaactgggtcaacaaactcattgtgttctttactttcctat 14258875  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
      |||||||||||||||| ||||||| ||||  |||||||||| ||  || | || ||||||  || |||| ||||||| || | |||||||||||||||    
T  14258874 tgtttattttcttgtttttatttctgcttatcgcgtgatgttgaaacattaatcgtaacattgcaaacgttaaaacatcataaaaaacatattaaaacaa 14258775  T
Q  201 gtgcgctagaattt 214  Q
    ||||| || |||||    
T  14258774 gtgcgttaaaattt 14258761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 29255011 - 29255155
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||| ||||||| | || ||| | | ||||||||||||||||  || ||||||||||||||||||||| |||||||||||||||||||    
T  29255011 ctacactagtggattttcttcctggcttgatagcc-ctagagtaggtgtgtttgccactgaactgggtcaacaaactcaccgtgttctttactttcttgt 29255109  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaa 146  Q
    |||||| ||||||||||| ||||  ||||| |||||||||||||||    
T  29255110 catttactttcttgtttttatttgagtttaattcgtgatgttggaa 29255155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 23882789 - 23882949
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||||  |||||| | ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||    
T  23882789 ctacactagtggatttccttcctgatttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcgtgt 23882888  T
Q  101 catttattttcttg-ttttgatttctgtttatttcgtgatgttggaattttcaacggaacatt 162  Q
    ||||||||||| || |||| |||  |||||| | | |||||||||||  || |||||||||||    
T  23882889 catttattttcatgctttttatt--tgtttactgcatgatgttggaacattaaacggaacatt 23882949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 25948556 - 25948450
Alignment:
Q  37 ccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgt 136  Q
    ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||    
T  25948556 ccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctgtcatttattttcttgtttttatttctgtttatcgcgt 25948457  T
Q  137 gatgttg 143  Q
    |||||||    
T  25948456 gatgttg 25948450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9281804 - 9282017
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||| | | |||||| | ||||||||||||||||||  |||||||| | ||||||||||||  |||||| |||||||  |||    
T  9281804 ctacactagtggatttccttccaggcttggtagcccccagagtaggtgtgtttgtcaccgaactagatcaacaaactcattgtgttcattacttttctgt 9281903  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | |||||||  ||||||| ||||||||||||  | |||||||||||  || |||  ||||||  || | || ||||||| || | ||| |||||||||||    
T  9281904 cttttatttaattgtttttatttctgtttatcgcttgatgttggaacattgaacttaacattgaaaactttaaaacatcatacataacgtattaaaacaa 9282003  T
Q  201 gtgcgctagaattt 214  Q
    ||||||||||||||    
T  9282004 gtgcgctagaattt 9282017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 17234655 - 17234442
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||| |||||||||||||  | | |||||| | | ||||||||||||||||  ||| |||||||||||||||||||  ||||||||||||||| |||    
T  17234655 ctacactggtggatttccttctgggcttggtagcccctagagtaggtgtgtttgtcaccaaactgggtcaacaaactcattgtgttctttactttcctgt 17234556  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    ||||||||||||| |||| |||||| |||||  |||||||||| ||| || | || ||||||  ||  |  |||||||| || | || ||||||||||||    
T  17234555 catttattttcttatttttatttctatttatcacgtgatgttgaaatattaatcgtaacattgcaaatgccgaaacatcatacataatatattaaaacaa 17234456  T
Q  201 gtgcgctagaattt 214  Q
    ||| ||||||||||    
T  17234455 gtgtgctagaattt 17234442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 17855258 - 17855128
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | || ||| ||||||||||||||||||||  ||||| |||||||||||||||||  | ||||||||||||| |||    
T  17855258 ctacactagtggatttccttcctggcttgatagcctccagagtaggtgtgtttgtcaccgatctgggtcaacaaactcattgcgttctttactttcctgt 17855159  T
Q  101 catttattttcttgttttgatttctgtttat 131  Q
    | |||||||||||||||| | |||| |||||    
T  17855158 cttttattttcttgtttttaattctatttat 17855128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 26965666 - 26965779
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||||| || ||| ||||||||||||||||||||  |||||||||||||||||||||    |||   |||||||||||||    
T  26965666 ctacactagtggatttccttcctgacttgatagcctccagagtaggtgtgtttgtcaccgaactgggtcaacaaactgtttgtgccttttactttcttgt 26965765  T
Q  101 catttattttcttg 114  Q
    ||||||||||||||    
T  26965766 catttattttcttg 26965779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 17864520 - 17864720
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctt-tactttcttg 99  Q
    |||||||||||||||| |||||||   |||||  | ||||||||||||||||||  |||||||| |||||||||||| || |||||| | ||||||||||    
T  17864520 ctacactagtggattttcttcctggattggtaacccccagagtaggtgtgtttgtcaccgaactaggtcaacaaacttactgtgttcatctactttcttg 17864619  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    |              |||| |||||| ||||||||||||||||| ||  || ||||| ||||| ||| ||||||||||||||| | ||||||||||||||    
T  17864620 t--------------tttttatttctatttatttcgtgatgttgcaacattgaacggtacattgtaaacgttgaaacatcttacataacatattaaaaca 17864705  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  17864706 agtgcgctagaattt 17864720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 17527980 - 17528107
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||  ||| ||| | |||||| | | | ||||||||||||||  || ||||||||| ||||||||||| ||||||||||||||| |||    
T  17527980 ctacactagtggattaactttctggcttggtagccccaatagtaggtgtgtttgtcactgaactgggttaacaaactcactgtgttctttactttcctgt 17528079  T
Q  101 catttattttcttgttttgatttctgtt 128  Q
    | |||||||||||||||| |||||||||    
T  17528080 cttttattttcttgtttttatttctgtt 17528107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 17869951 - 17870026
Alignment:
Q  39 agagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttg 114  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  17869951 agagtaggtgtgtttgtcaccgaactgggtcaacaaactcactgtgtcctttactttcttgtcatttattttcttg 17870026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 17879703 - 17879778
Alignment:
Q  39 agagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttg 114  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  17879703 agagtaggtgtgtttgtcaccgaactgggtcaacaaactcactgtgtcctttactttcttgtcatttattttcttg 17879778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 21717702 - 21717853
Alignment:
Q  63 ctgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacatt 162  Q
    |||||||||||||||||  |||||||||||||||  ||| |||||||||||| ||| ||||||||||||  |||||||||||||  || |||||||||||    
T  21717702 ctgggtcaacaaactcattgtgttctttactttccagtcgtttattttcttgattttatttctgtttatcacgtgatgttggaacattaaacggaacatt 21717801  T
Q  163 ataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
      || | || |||||||| | ||||  || |||||||||  |||||||||||    
T  21717802 gcaaacattaaaacatctgacagaatttaataaaacaagaacgctagaattt 21717853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 21725538 - 21725689
Alignment:
Q  63 ctgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacatt 162  Q
    |||||||||||||||||  |||||||||||||||  ||| |||||||||||| ||| ||||||||||||  |||||||||||||  || |||||||||||    
T  21725538 ctgggtcaacaaactcattgtgttctttactttccagtcgtttattttcttgattttatttctgtttatcacgtgatgttggaacattaaacggaacatt 21725637  T
Q  163 ataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
      || | || |||||||| | ||||  || |||||||||  |||||||||||    
T  21725638 gcaaacattaaaacatctgacagaatttaataaaacaagaacgctagaattt 21725689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 12385261 - 12385333
Alignment:
Q  42 gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttg 114  Q
    |||||||||||||  | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  12385261 gtaggtgtgtttgtcatcgaactgggccaacaaactcactgtgttctttactttcttgtcatttattttcttg 12385333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 21706486 - 21706589
Alignment:
Q  42 gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgt 141  Q
    |||||||||||||  ||| |||||||| ||||||||||  ||||||||||||||| ||||  ||||||||||||||| |||| |||||||  | ||||||    
T  21706486 gtaggtgtgtttgtcaccaaactgggttaacaaactcattgtgttctttactttcctgtcgattattttcttgtttttatttatgtttatcacttgatgt 21706585  T
Q  142 tgga 145  Q
    ||||    
T  21706586 tgga 21706589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24501888 - 24501812
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaact 77  Q
    |||||||||||||||||||| ||| | |||||| ||| ||||||||||||||||  |||||||||||| ||||||||    
T  24501888 ctacactagtggatttcctttctggcttggtagcctctagagtaggtgtgtttgtcaccgaactgggttaacaaact 24501812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12444815 - 12444891
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactc 78  Q
    ||||||||||||| |||||||||  | |||||| |||||||||||||||| |||  |||||||||||| |||||||||    
T  12444815 ctacactagtggagttccttcctagcttggtagcctccagagtaggtgtg-ttgtcaccgaactgggttaacaaactc 12444891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 15038411 - 15038319
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactt 94  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||   || | ||| |||||||| ||||||||||| ||||  |||||||    
T  15038411 ctacactagtggatttccttcctgacttggtagcccccagagtaggtgacgtt-gcaccaaactgggttaacaaactcactgtgtcttttactt 15038319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18152801 - 18152874
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    |||| ||||||||||||||||||| | |||||| ||||| ||||||||||||||  || ||||||||| |||||    
T  18152801 ctacgctagtggatttccttcctgccttggtagcctccatagtaggtgtgtttgtcactgaactgggttaacaa 18152874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 30424998 - 30424894
Alignment:
Q  2 tacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtc 101  Q
    ||||||| |||||||||||| || | |||||| | | ||||||||||||||||  |||||||||| ||||||| ||  | ||||  ||||||||||||||    
T  30424998 tacactaatggatttccttcttggcttggtagcccctagagtaggtgtgtttgtcaccgaactggttcaacaatcttcctgtgtattttactttcttgtc 30424899  T
Q  102 attta 106  Q
     ||||    
T  30424898 tttta 30424894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9384677 - 9384599
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcac 80  Q
    |||||||||||||||||||||||||| |||||| | ||||| |||| |   || |||||||||||||| |||||||||||    
T  9384677 ctacactagtggatttccttcctgacttggtagccaccagaataggcgacgtt-gtaccgaactgggttaacaaactcac 9384599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 34657247 - 34657341
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccaga-gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttc 96  Q
    ||||||||||||||||||||| || | |||||| | | ||| ||||||| |||  || ||||||||||| ||||||||| | |||||||||||||||    
T  34657247 ctacactagtggatttccttcttggcttggtagcccctagatgtaggtgagtt--gtgccgaactgggttaacaaactctctgtgttctttactttc 34657341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 13870561 - 13870604
Alignment:
Q  171 tgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
    ||||||||| |  |||||||||||||||||||||||||||||||    
T  13870561 tgaaacatcattcagaacatattaaaacaagtgcgctagaattt 13870604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 29255152 - 29255211
Alignment:
Q  155 ggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
    |||||||| ||| ||||||||||||||| ||||| | ||||||||||| ||||| |||||    
T  29255152 ggaacattgtaaacgttgaaacatcttacagaactttttaaaacaagtacgctaaaattt 29255211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 19894775 - 19894820
Alignment:
Q  168 cgttgaaacatcttatagaacatattaaaacaagtgcgctagaatt 213  Q
    ||||| |||||| || |||||||||||||||||||| |||||||||    
T  19894775 cgttgtaacatcatacagaacatattaaaacaagtgtgctagaatt 19894820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 34991214 - 34991291
Alignment:
Q  137 gatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
    ||||||||||  || |||||||||||  |  |||| |||||| | | |||||||||||||| ||||||||||||||||    
T  34991214 gatgttggaacattaaacggaacattgcagacgttaaaacatatgacagaacatattaaaataagtgcgctagaattt 34991291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18221 - 18433
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtag-tctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    ||||||||||||||||||||| || | | ||||  | ||||||||||||||||||  |||||||| |||||||||||||||  |||||||||||||||||    
T  18221 ctacactagtggatttccttcttggcttcgtagccccccagagtaggtgtgtttgtcaccgaactaggtcaacaaactcactatgttctttactttcttg 18320  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    ||||||||||||||||||| |||| ||||||  ||||||||||||||  || ||||| |||||  || |||| |||||||||| ||||||||||||||||    
T  18321 tcatttattttcttgtttttatttttgttta--tcgtgatgttggaacgttgaacgggacattgcaaacgttaaaacatcttacagaacatattaaaaca 18418  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  18419 agtgcgctagaattt 18433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 27615 - 27827
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtag-tctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    ||||||||||||||||||||| || | | ||||  | ||||||||||||||||||  |||||||| |||||||||||||||  |||||||||||||||||    
T  27615 ctacactagtggatttccttcttggcttcgtagccccccagagtaggtgtgtttgtcaccgaactaggtcaacaaactcactatgttctttactttcttg 27714  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    ||||||||||||||||||| |||| ||||||  ||||||||||||||  || ||||| |||||  || |||| |||||||||| ||||||||||||||||    
T  27715 tcatttattttcttgtttttatttttgttta--tcgtgatgttggaacgttgaacgggacattgcaaacgttaaaacatcttacagaacatattaaaaca 27812  T
Q  200 agtgcgctagaattt 214  Q
    |||||||||||||||    
T  27813 agtgcgctagaattt 27827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 7635 - 7848
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||| |||||||||||| | |||||| | | |||||| |||||||||  |||||||| ||||||||||||||| |||||||||||||||||||    
T  7635 ctacactagtgaatttccttcctggcttggtagcccctagagtaagtgtgtttgtcaccgaactaggtcaacaaactcactgtgttctttactttcttgt 7734  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
     ||||||||||||||||| |||||||||||| ||||||| ||||||  || |||   |||||  || |||| || ||||||| |||||||||||||||||    
T  7735 aatttattttcttgtttttatttctgtttatctcgtgatattggaacattgaacatgacattgcaaacgttaaatcatcttacagaacatattaaaacaa 7834  T
Q  201 gtgcgctagaattt 214  Q
    ||||||||||||||    
T  7835 gtgcgctagaattt 7848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 12910553 - 12910340
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||| |||||||||||||||| | |||||| | ||||||||||| ||||||  |||||||||||||||||||||||| |||||||||| |||  |||    
T  12910553 ctacacttgtggatttccttcctggcttggtagcccccagagtaggtatgtttgtcaccgaactgggtcaacaaactcactgtgttctttaattttctgt 12910454  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||||||||  |||||||||| || ||| | || ||||||  || || ||||||||| || ||||| |||||||||||    
T  12910453 catttattttcttgtttttatttctgtttatcgcgtgatgttgaaactttaatcgtaacattgcaaacgctgaaacatcatacagaacgtattaaaacaa 12910354  T
Q  201 gtgcgctagaattt 214  Q
    |||||||| |||||    
T  12910353 gtgcgctaaaattt 12910340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 23758689 - 23758476
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||| ||||||||  |||||||||||||||||||||||  ||||||||||||||| |||    
T  23758689 ctacactagtggatttccttcctggcttggtagcccccagagtagttgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctgt 23758590  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | |||||||||||||||| ||||||||||||  |||||||||| ||  || | || ||||||  || |  ||||||||| || | |||  ||||||||||    
T  23758589 cttttattttcttgtttttatttctgtttatcgcgtgatgttgaaacattaatcgtaacattgcaaacactgaaacatcatacaaaactaattaaaacaa 23758490  T
Q  201 gtgcgctagaattt 214  Q
    ||| ||||||||||    
T  23758489 gtgtgctagaattt 23758476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 24790254 - 24790467
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||| ||||||||||||||||||||| |||||| | ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||    
T  24790254 ctactctagtggatttccttcctgacttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctgt 24790353  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    | |||||||||||||||| |||||||| |||  |||||||||| ||  || | || ||||||| || |   | |||||| || | |||||||||||| ||    
T  24790354 cttttattttcttgtttttatttctgtctatcgcgtgatgttgaaacattaatcgtaacattacaaactccgtaacatcgtacaaaacatattaaaataa 24790453  T
Q  201 gtgcgctagaattt 214  Q
    ||| ||||||||||    
T  24790454 gtgggctagaattt 24790467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 36398890 - 36399019
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||||||||  |||||||||||||||||||||||  | ||||||||||||| |||    
T  36398890 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgcgttctttactttcctgt 36398989  T
Q  101 catttattttcttgttttgatttctgttta 130  Q
    | |||||||||||||||| |||||||||||    
T  36398990 cgtttattttcttgtttttatttctgttta 36399019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 22610915 - 22610743
Alignment:
Q  42 gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgtcatttattttcttgttttgatttctgtttatttcgtgatgt 141  Q
    |||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||| |||||||||||||||| ||||||||||||  ||||||||    
T  22610915 gtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcctgtcttttattttcttgtttttatttctgtttatcgcgtgatgt 22610816  T
Q  142 tggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaagtgcgctagaattt 214  Q
    || ||  || | || || |||  || |   | |||||| || |||||||||||||| ||||||||||||||||    
T  22610815 tgaaacattaatcgtaatattgcaaactccgtaacatcatacagaacatattaaaataagtgcgctagaattt 22610743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 21250292 - 21250407
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaact-gggtcaacaaactcacagtgttctttactttcttg 99  Q
    ||||||||  |||||||||||||  | |||||| | ||||||||||||||||||  |||||||| |||||||||||||||| |||   ||||||||||||    
T  21250292 ctacactaacggatttccttcctagcttggtagcccccagagtaggtgtgtttgtcaccgaactggggtcaacaaactcactgtgccttttactttcttg 21250391  T
Q  100 tcatttattttcttgt 115  Q
    |||||||||| |||||    
T  21250392 tcatttatttacttgt 21250407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12952536 - 12952462
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaa 75  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||  |||||||||||| ||||||    
T  12952536 ctacactagtggatttccttcctgacttggtagcctccatagtaggtgtgtttgtcaccgaactgggttaacaaa 12952462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19466618 - 19466727
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | |||||||||||||||||   |||||||||||| || |||||||| |||   |||||||||| ||    
T  19466618 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgtgtttatcaccgaactgggttaagaaactcaccgtgccatttactttctagt 19466717  T
Q  101 catttatttt 110  Q
     |||||||||    
T  19466718 tatttatttt 19466727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31587539 - 31587467
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||||||||  |||||||||||| |||||    
T  31587539 ctacactagtggatttccttcctggcttggtag-ctccagagtaggtgtgtttgtcaccgaactgggttaacaa 31587467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20649652 - 20649727
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaac 76  Q
    |||||||||||||||||||||||||| | |||| | | ||||||||||||||||   ||||||||||| |||||||    
T  20649652 ctacactagtggatttccttcctgactttgtagcccctagagtaggtgtgtttgtccccgaactgggttaacaaac 20649727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 21530449 - 21530330
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| || | |||||| | | ||||||||  ||||||  |||||||||| | |||||||||   |||   |||||||||||||    
T  21530449 ctacactagtggatttccttcttggcttggtagcccctagagtaggcatgtttgtcaccgaactggataaacaaactcgttgtgccatttactttcttgt 21530350  T
Q  101 cattta-ttttcttgttttg 119  Q
    |||||| |||||||||||||    
T  21530349 catttatttttcttgttttg 21530330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 22582477 - 22582363
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccag-agtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttcttt-actttctt 98  Q
    ||||||||||| |||| ||||||  | |||||| |||| | ||||||||||||||  | ||||||| |||||||||||| | ||||| ||| ||||||||    
T  22582477 ctacactagtgtattttcttccttgcttggtag-ctcctgtagtaggtgtgtttgtcatcgaactgagtcaacaaactctctgtgtttttttactttctt 22582379  T
Q  99 gtcatttattttcttg 114  Q
    ||||||||||||||||    
T  22582378 gtcatttattttcttg 22582363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24283624 - 24283688
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactg 65  Q
    |||||||||| ||||||||||||||| |||||| | ||||| ||||||||||||  |||||||||    
T  24283624 ctacactagtagatttccttcctgacttggtagcccccagaataggtgtgtttgtcaccgaactg 24283688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 18765739 - 18765661
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcac 80  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||   || | |||||||||||| |||||||||||    
T  18765739 ctacactagtggatttccttcctggcttggtagcccccagagtaggtgacgtt-gcaccgaactgggttaacaaactcac 18765661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27111143 - 27111071
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    ||||||||||||| |||||||||| | |||||| | ||||||||||||||||||  ||||| |||||| |||||    
T  27111143 ctacactagtggacttccttcctggcttggtagcc-ccagagtaggtgtgtttgtcaccgatctgggttaacaa 27111071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 24317905 - 24317981
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccaga-gtaggtgtgtttggtaccgaactgggtcaacaaac 76  Q
    |||||||||||||||||||||||| | |||||  | ||||| |||||||||||||  |||||| ||||| |||||||    
T  24317905 ctacactagtggatttccttcctggcttggtaacccccagatgtaggtgtgtttgtcaccgaattgggttaacaaac 24317981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19198374 - 19198426
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttg 54  Q
    |||||||||||||||||||||||| | || ||| | ||||||||||||||||||    
T  19198374 ctacactagtggatttccttcctggcttgatag-ccccagagtaggtgtgtttg 19198426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25347257 - 25347204
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttg 54  Q
    |||||||||||| ||||||| ||| | |||||| | ||||||||||||||||||    
T  25347257 ctacactagtgggtttcctttctggcttggtagcccccagagtaggtgtgtttg 25347204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 17373 - 17587
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||| ||||||||| |||||| | ||||||||||||||||||  ||  |||||||||||||||||||| ||||| |||||||||||||    
T  17373 ctacactagtggattttcttcctgacttggtagcccccagagtaggtgtgtttgtcacgaaactgggtcaacaaactcactgtgttttttactttcttgt 17472  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||| ||| ||| |||| |||||||  |||||| ||| ||  || ||| |||||||  || |||| ||||||| || |||||||| ||||||||    
T  17473 catttattttattgattttatttttgtttatcgcgtgattttgaaacattgaactgaacattgcaaacgttaaaacatcgtacagaacatactaaaacaa 17572  T
Q  201 gtgcgctagaatttt 215  Q
    |||||||||||||||    
T  17573 gtgcgctagaatttt 17587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 16720 - 16933
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||| |||||||||||||| ||| | |||||| | || |||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||    
T  16720 ctacagtagtggatttcctttctggcttggtagcccccggagtaggtgtgtttgtcaccgaactgagtcaacaaactcactgtgttctttactttcttgt 16819  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| ||||||| |||||||||||| ||| ||  || ||  | || ||  ||  |||||||||||| |  ||||||||||||||||    
T  16820 catttattttcttgtttttatttctgcttatttcgtgatattgaaacattaaataggactttgcaaatgttgaaacatctcactgaacatattaaaacaa 16919  T
Q  201 gtgcgctagaattt 214  Q
    |||||||| |||||    
T  16920 gtgcgctaaaattt 16933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 25769 - 25982
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||| ||||||||||||||||| | ||||||   ||||||||||||||||||  ||||||||||||||| |||||||  ||||| ||||||||| |||    
T  25769 ctacaccagtggatttccttcctggcttggtagctcccagagtaggtgtgtttgtcaccgaactgggtcaataaactcattgtgttatttactttcctgt 25868  T
Q  101 catttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaacaa 200  Q
    |||||||||||||||||| |||| |||||||  |||||||||| ||  || | || | ||||  || || ||||||||| || ||||| |||||||||||    
T  25869 catttattttcttgtttttatttatgtttatcgcgtgatgttgaaacattaatcgtagcattgcaaacgctgaaacatcatacagaacgtattaaaacaa 25968  T
Q  201 gtgcgctagaattt 214  Q
    || |||||||||||    
T  25969 gtacgctagaattt 25982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 50187 - 50401
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||||| |||||| | | ||||||||||||||||  |||||||||||||||||||||||  ||||| ||||||||| |||    
T  50187 ctacactagtggatttccttcctgacttggtagcccctagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttatttactttcatgt 50286  T
Q  101 catttattttcttg-ttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    |||||| ||||||| |||| ||||||||||||  |||||||||| ||  || | || ||||||  || ||    |||||| || ||||| ||||||||||    
T  50287 catttactttcttgttttttatttctgtttatcgcgtgatgttgaaacattaatcgtaacattgcaaacgccttaacatcatacagaacgtattaaaaca 50386  T
Q  200 agtgcgctagaattt 214  Q
    |||| ||||||||||    
T  50387 agtgtgctagaattt 50401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 61569 - 61782
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||||||||||||||||| || | |||||| | ||||||||  ||||||||  |||||||||||||||||||||||  ||| | ||||||||| |||    
T  61569 ctacactagtggatttccttcttggcttggtagcccccagagtaa-tgtgtttgtcaccgaactgggtcaacaaactcattgtgctatttactttcctgt 61667  T
Q  101 catttattttcttg-ttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    |||||| ||||||| |||| |||| |||||||  |||||||||| ||| || | || ||||||  || ||  | |||||| || | ||||||||||||||    
T  61668 catttactttcttgttttttatttttgtttatcgcgtgatgttgaaatattaatcgtaacattgcaaacgccgtaacatcatacaaaacatattaaaaca 61767  T
Q  200 agtgcgctagaattt 214  Q
    | || ||||||||||    
T  61768 aatgtgctagaattt 61782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 110352 - 110566
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggt-accgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    |||||||||||||||||||||||||| |||||| | | |||||| |||||||| || |||||||||| ||||||||||||  ||||| ||||||||| ||    
T  110352 ctacactagtggatttccttcctgacttggtagcccctagagtatgtgtgttttgtcaccgaactggttcaacaaactcattgtgttatttactttcctg 110451  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    ||||||| ||||||||||| ||||||||||||   ||||||||| ||  || | || ||||||  || || ||||||||| || | ||| ||||||||||    
T  110452 tcatttactttcttgtttttatttctgtttatcgagtgatgttgaaacattaatcgtaacattgcaatcgctgaaacatcatacataacgtattaaaaca 110551  T
Q  200 agtgcgctagaattt 214  Q
    |||||| || |||||    
T  110552 agtgcggtaaaattt 110566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 87799 - 87588
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccaga-gtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttg 99  Q
    |||||||||||||||||||||||  | ||| || | ||| | |||||||||||||  |||||||||||||||||||||||  |||||||||||||||  |    
T  87799 ctacactagtggatttccttcctagcttgg-agcccccatacgtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgttctttactttcccg 87701  T
Q  100 tcatttattttcttgttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
     |||||||||||||||||| ||||||||||||  |||||||||||||  || || |||||||| ||  | || | |||||| | ||||||| ||||||||    
T  87700 ccatttattttcttgtttttatttctgtttatcacgtgatgttggaacattaaatggaacattgtagacattaatacatctgacagaacat-ttaaaaca 87602  T
Q  200 agtgcgctagaatt 213  Q
    ||||| ||||||||    
T  87601 agtgcactagaatt 87588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 37069 - 36856
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||||||||  |||||||||||||||||||||||  ||||| ||||||||| |      
T  37069 ctacactagtggatttccttcctggcttggtagcctccagagtaggtgtgtttgtcaccgaactgggtcaacaaactcattgtgtt-tttactttcctaa 36971  T
Q  101 catttattttcttg-ttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaaca 199  Q
    | |||||||||||| |||| | || |||||||  | |||| ||| ||  || | || ||||||  || ||| | |||||| |||||||||||||||||||    
T  36970 cttttattttcttgttttttaattttgtttatcgcatgattttgaaacattaatcgtaacattgcaaacgtcgtaacatcatatagaacatattaaaaca 36871  T
Q  200 agtgcgctagaattt 214  Q
    ||||  |||||||||    
T  36870 agtgtcctagaattt 36856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 16309 - 16522
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||| | |||||| | ||| ||| | ||   |||  |||||||||||| ||||||||||| |||||||||||||||||||    
T  16309 ctacactagtggatttccttcctggcttggtagcccccaaagtggttgacgttgc-accgaactgggttaacaaactcactgtgttctttactttcttgt 16407  T
Q  101 catttattttcttgttttgat--ttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaac 198  Q
    ||||||||||||||||||  |  ||||||||||  |||||||||||||  || |||| |||||   || |||| ||||||| || | ||| |||||||||    
T  16408 catttattttcttgttttttttcttctgtttatcgcgtgatgttggaa-attaaacgtaacatcgcaaacgttaaaacatcatacataacgtattaaaac 16506  T
Q  199 aagtgcgctagaattt 214  Q
    |||||| || ||||||    
T  16507 aagtgcccttgaattt 16522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 40398 - 40287
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||||||||||||||||||  | |||||| | |||||||||||||||| |  || ||||||||||||||||||||| ||||||||||||||||| |    
T  40398 ctacactagtggatttccttcctagcttggtagcccccagagtaggtgtgtt-gtcactgaactgggtcaacaaactcactgtgttctttactttcttat 40300  T
Q  101 catttattttctt 113  Q
    ||||| |||||||    
T  40299 cattttttttctt 40287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2454 - 2584
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    |||||||| |||| |||||||||| | || ||| | | | |||||||||| |||  |||||| ||||||||||||||||  ||||||||||||||| | |    
T  2454 ctacactattggacttccttcctggcttgatagcccctaaagtaggtgtgcttgtcaccgaaatgggtcaacaaactcattgtgttctttactttcctat 2553  T
Q  101 catttattttcttgttttgatttctgtttat 131  Q
    |||||||||||||||||| |||| |||||||    
T  2554 catttattttcttgtttttatttatgtttat 2584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5709 - 5495
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcacagtgttctttactttcttgt 100  Q
    ||||||| |||||||||||||||  | |||||| | | ||||||||||||||||  ||||||||||||||||||| |||  ||||||||||||||| |||    
T  5709 ctacacttgtggatttccttccttgcttggtagcc-ctagagtaggtgtgtttgacaccgaactgggtcaacaaattcattgtgttctttactttcctgt 5611  T
Q  101 catttattttcttg--ttttgatttctgtttatttcgtgatgttggaattttcaacggaacattataagcgttgaaacatcttatagaacatattaaaac 198  Q
    | ||||||||  ||  |||| |||||| |||||  |||||||||| ||  || |  | ||||||  || ||  | || ||| || |||||||||||||||    
T  5610 cttttattttgctgtttttttatttctatttatcgcgtgatgttgaaacattaattgtaacattgcaaacgccgtaatatcatacagaacatattaaaac 5511  T
Q  199 aagtgcgctagaattt 214  Q
    |||||||||| |||||    
T  5510 aagtgcgctaaaattt 5495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3186 - 3111
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaact 77  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||||| |||  |||||||||| | ||||||||    
T  3186 ctacactagtggatttccttcctggcttggtagcctccagagtaggtgtg-ttgtcaccgaactggattaacaaact 3111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 202459 - 202346
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaaactcac-agtgttctttactttcttg 99  Q
    |||||||||||||||||||||||||| |||||| | ||||||||  ||||||||  | |||||||||| ||| ||||| |  ||| | |||||||||| |    
T  202459 ctacactagtggatttccttcctgacttggtagcccccagagtacttgtgtttgtcaacgaactgggttaac-aactctcttgtgctatttactttctag 202361  T
Q  100 tcatttattttcttg 114  Q
    | |||||||||||||    
T  202360 ttatttattttcttg 202346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36656 - 36603
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttg 54  Q
    |||||||||||||||||||||||  | |||||| ||||||||||||||||||||    
T  36656 ctacactagtggatttccttcctagcttggtagcctccagagtaggtgtgtttg 36603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10131 - 10204
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    |||||||||||||||||||| ||||| |||||| | | |||||| |||| ||||  |||||||||||| |||||    
T  10131 ctacactagtggatttcctttctgacttggtagccccaagagtaagtgtatttgtcaccgaactgggttaacaa 10204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37429 - 37357
Alignment:
Q  1 ctacactagtggatttccttcctgacgtggtagtctccagagtaggtgtgtttggtaccgaactgggtcaacaa 74  Q
    |||||||||||||||||||||||||| |||||| | ||| ||| ||||||| ||  |||||||||||| |||||    
T  37429 ctacactagtggatttccttcctgacttggtag-ccccatagtgggtgtgtctgtcaccgaactgggttaacaa 37357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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