View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8610_low_10 (Length: 272)
Name: NF8610_low_10
Description: NF8610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8610_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 55707935 - 55707773
Alignment:
| Q |
14 |
caaatgtcactctgtatttgggacaagtcgaaggactgtcatggtaagctttatcttatctatcatccatgcaaatgtcatgaatgccatccaacaacca |
113 |
Q |
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| T |
55707935 |
caaatgccactctgtatttgggacaagtcgaaggactgtcatggtaagctttatcttatctatcatccatgcaaatgtcatgaatgccatccaacaacca |
55707836 |
T |
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| Q |
114 |
caaagccattgaaaggttcgccactccagcaactagagttcccaccagctatttaggaatttc |
176 |
Q |
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| T |
55707835 |
caaagcaactgaaaggttcaccactccagcaactagagttcccaccagctatttaggaatttc |
55707773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 56046630 - 56046486
Alignment:
| Q |
14 |
caaatgtcactctgtatttgggacaagtcgaaggactgtcatggtaagctttatcttatctatcatccatgcaaatgtcatgaatgccatccaacaacca |
113 |
Q |
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| T |
56046630 |
caaatgtcactcggtatttgggacaagtccaaggactatcatggtgagctttatc---------atccatgcaaatgtccttaatgctatccaacatcca |
56046540 |
T |
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| Q |
114 |
caaagccattgaaaggttcgccactccagcaactagagttcccaccagctattt |
167 |
Q |
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| T |
56046539 |
ccaagccaccgaaaggttcaccactccagcaactagtgttcccaccagctattt |
56046486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 55707728 - 55707687
Alignment:
| Q |
221 |
tgcttaaactgggagattttgagctgagaagacctttgatgt |
262 |
Q |
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| T |
55707728 |
tgcttaaactgggagattttgagctgagaagacctttgatgt |
55707687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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