View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8610_low_13 (Length: 246)
Name: NF8610_low_13
Description: NF8610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8610_low_13 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 31254877 - 31255083
Alignment:
| Q |
40 |
agaaactttaatttggcgatgaatatttaatcatggcagtatagttggtacatggtggtcatacacttaaaagcaaacagaaacaaaaactatacagcta |
139 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31254877 |
agaaactttaatttggcaatgaatacttaatcatggcagtatagttggtacttggtggtcatacacttaaaagcaaacagaaacaaaaactatacagcta |
31254976 |
T |
|
| Q |
140 |
agcaggggaaaggcaaggaagcgagcagatagaaaaggcaaagttaacttagaaaggtaaaagaaataacggatgatacgtttatagtattaccgcatga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31254977 |
agcaggggaaaggcaaggaagcgagcagaaagaaaaggcaaagttaacttagaaaggtaaaagaaataacggatgatacgtttatagtattaccacatga |
31255076 |
T |
|
| Q |
240 |
taactga |
246 |
Q |
| |
|
||||||| |
|
|
| T |
31255077 |
taactga |
31255083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 38837487 - 38837292
Alignment:
| Q |
40 |
agaaactttaatttggcgatgaatatttaatcatggcagtatagttggtacatggtggtcatacacttaaaagcaaacagaaaca-aaaactatacagct |
138 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
38837487 |
agaaactttaatttggcgatgaatacttaatcatggcagtatagttggtacttggtggtcatacacttaagagcaaacagaaacaaaaaactatacagct |
38837388 |
T |
|
| Q |
139 |
aagcaggggaaaggcaaggaagcgagcagatagaaaaggcaaagttaacttagaaaggtaaaagaaataacggatgatacgtttatagtattaccgcatg |
238 |
Q |
| |
|
||||||||| ||||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38837387 |
-----------aggcaaggaggcgagcagaaag-aaagacaaagttaacttagaaaagtaaaataaataacggatgatacgtttacagtattaccgcatg |
38837300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 3300828 - 3300630
Alignment:
| Q |
40 |
agaaactttaatttggcgatgaatatttaatcatggcagtatagttggtacatggtggtcatacacttaaaagcaaacagaaacaaaaactatacagcta |
139 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3300828 |
agaaattttaatttggcgatgaatacttaatcatggcagtatagttggtacttggtggtcatacacttaaaagcaaacagaaacataaactatacagct- |
3300730 |
T |
|
| Q |
140 |
agcaggggaaaggcaaggaagcgagcagatagaaaaggcaaagttaacttagaaaggtaaaa----gaaataacggatgatacgtttatagtattaccgc |
235 |
Q |
| |
|
||||||||||||||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3300729 |
----------aggcaaggaagcgagcagaaag-aaagacaaagttaacttagaaaagtaaaatatttaaataacggatgatacgtttatagtattaccgc |
3300641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University