View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8610_low_2 (Length: 451)
Name: NF8610_low_2
Description: NF8610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8610_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 7169357 - 7168934
Alignment:
| Q |
18 |
catcacagattaccctctctccaccgtctttaccgatgtaactgccactgccacacagctgaattaccctctcaacgatcgaaaccgttttgatgtcatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7169357 |
catcacagattaccctctctccaccgtctttaccgatgtaactgccactgccacacagctgaattaccctctcaacgatcgaaaccgttttgatgttatc |
7169258 |
T |
|
| Q |
118 |
gttggttcttgccatggcatcctctgtttcgctctcgatgaacgtttcgctcttttgtggaacccttcaattaggaaatttactcaattgccctctttgg |
217 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7169257 |
gttggttcttgccatggcatcctctgtttcgcactcgatgaatgtttcgctcttttgcggaacccttcaattaggaaatttactcaattgccctctttgg |
7169158 |
T |
|
| Q |
218 |
atattcctaaacgagaggggagttacacaatatatggttttggttatgatcatttcaatgatacttacaaggttgttgctgttaattgctttgaatctga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7169157 |
atattcctaaacgagaggggagttacacaatatatggttttggttatgatcatttcaatgatacttacaaggttgttgctgttaattgctttgaatctga |
7169058 |
T |
|
| Q |
318 |
cac------caatggtagtaaggtttacaaaactgaagttaaggtctatactttgggcaccgattattggagaaggattcaggattttccttccggtgtc |
411 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7169057 |
cactgacagcaatggtagtaaggtttacaaaactgaagttaaggtctatactttgggcaccgattattggagaaggattcaggattttccttccggtgtt |
7168958 |
T |
|
| Q |
412 |
ccttttgataattcgggaacattt |
435 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7168957 |
ccttttgataattcgggaacattt |
7168934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 31 - 420
Target Start/End: Original strand, 11237090 - 11237476
Alignment:
| Q |
31 |
cctctctccaccgtctttaccgatgtaactgccactgccacacagctgaattaccctctcaacgatcgaa------accgttttgatgtcatcgttggtt |
124 |
Q |
| |
|
||||||||| || |||| ||||| |||||| |||| ||||||||||| |||||||||| ||| |||||| ||| ||| ||| |||||||||| | |
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| T |
11237090 |
cctctctcctccttcttcaccgacgtaacttccaccgccacacagctagattaccctctgaacaatcgaattcgaaaccttttcgatctcatcgttggct |
11237189 |
T |
|
| Q |
125 |
cttgccatggcatcctctgtttcgctctcgatgaacgtttcgctcttttgtggaacccttcaattaggaaatttactcaattgccctctttggatattcc |
224 |
Q |
| |
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|||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||| ||||||||| ||| || |||||||||| ||| |
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| T |
11237190 |
cttgccatggtatcctctgtttcgcactcgatcaacgtttcgctcttttgtggaacccttccattaagaaatttacgaaatcaccatctttggataatcc |
11237289 |
T |
|
| Q |
225 |
taaacgagaggggagttacacaatatatggttttggttatgatcatttcaatgatacttacaaggttgttgctgttaattgctttgaatctgacaccaat |
324 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||| || |
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| T |
11237290 |
aaaacgagatgggagttacacaatttatggttttggctatgatcatgtcaatgacatttacaaggttgttgctgtttattgctttgaatctga---taac |
11237386 |
T |
|
| Q |
325 |
ggtagtaaggtttacaaaactgaagttaaggtctatactttgggcaccgattattggagaaggattcaggattttccttccggtgtcccttttgat |
420 |
Q |
| |
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|| || |||||||||| |||| |||||| |||||||||| ||| ||| ||||||||||||||| ||||| |||| ||||||||||||||| |
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|
| T |
11237387 |
gg------ggattacaaaactcaagtgaaggtccatactttgggtaccaatttttggagaaggattcatgatttaccttttggtgtcccttttgat |
11237476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 3181337 - 3181395
Alignment:
| Q |
242 |
acacaatatatggttttggttatgatcatttcaatgatacttacaaggttgttgctgtt |
300 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||| ||||| |
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|
| T |
3181337 |
acactatatatggttttggttatgatcctttcattgataattataaggttgtttctgtt |
3181395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 3181420 - 3181481
Alignment:
| Q |
340 |
aaaactgaagttaaggtctatactttgggcaccgattattggagaaggattcaggattttcc |
401 |
Q |
| |
|
|||||||| |||| || |||||||| || || |||||||||||||||||| |||||||||| |
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|
| T |
3181420 |
aaaactgaggttagtgtttatactttaggtactgattattggagaaggattgaggattttcc |
3181481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 1421599 - 1421547
Alignment:
| Q |
248 |
tatatggttttggttatgatcatttcaatgatacttacaaggttgttgctgtt |
300 |
Q |
| |
|
|||||| |||||| ||||||| ||||| ||||| ||||||||||||||||||| |
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|
| T |
1421599 |
tatatgcttttggatatgatcctttcattgataattacaaggttgttgctgtt |
1421547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 24722914 - 24722967
Alignment:
| Q |
170 |
ttttgtggaacccttcaattaggaaatttactcaattgccctctttggatattc |
223 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || |||||||||||||||| |||| |
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| T |
24722914 |
ttttgtggaacccttccattagaaaattcacaaaattgccctctttggaaattc |
24722967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 2697261 - 2697199
Alignment:
| Q |
153 |
cgatgaacgtttcgctcttttgtggaacccttcaattaggaaatttactcaattgccctcttt |
215 |
Q |
| |
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||||||| ||||| ||| |||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
2697261 |
cgatgaaggtttcattctattgtggaacccttcaattagaaaatttaaggaattgccctcttt |
2697199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 51858334 - 51858376
Alignment:
| Q |
359 |
atactttgggcaccgattattggagaaggattcaggattttcc |
401 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
51858334 |
atactttgggtaccgattattggagaaagattcaggactttcc |
51858376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 51757070 - 51757034
Alignment:
| Q |
359 |
atactttgggcaccgattattggagaaggattcagga |
395 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| |
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|
| T |
51757070 |
atactttgggtaccgattattggagaaggatccagga |
51757034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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