View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8610_low_3 (Length: 409)
Name: NF8610_low_3
Description: NF8610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8610_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 2219043 - 2218914
Alignment:
| Q |
53 |
tatcctttcgtttcatcgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattaca |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2219043 |
tatcctttcgtttcattgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattaca |
2218944 |
T |
|
| Q |
153 |
tttggtttatgttacattgctaaagtattg |
182 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
2218943 |
tttggcttatgttacattgctaaagtattg |
2218914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 229 - 390
Target Start/End: Complemental strand, 2218857 - 2218697
Alignment:
| Q |
229 |
ttgtaactggaaaatgggttttactttttgtagagaaaaattgtatttttagatttgggtttttatctaagatgaagattggagtaaaaagattgannnn |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2218857 |
ttgtaactggaaaatgggttttactttttgtagagaaaaattgtatttttagatttgggtttttatctaagatgaagattggggtaaaaagattga-ttt |
2218759 |
T |
|
| Q |
329 |
nnnnnnnccaccaagattgaaatgtgggtgtattgttgttttgccgttgtctatatagtgat |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
2218758 |
tttttttccaccaagattgaaatgtgggtgtattgttgttttaccgttgtctgtatagtgat |
2218697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 2226385 - 2226299
Alignment:
| Q |
238 |
gaaaatgggttttactttttgtagagaaaaattgtatttttagatttgggtttttatctaagatgaagattggagtaaaaagattga |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
2226385 |
gaaaatgggttttactttttgtagagaaaatttgtatttttagatttgggtttttatctatgatgaagaattgagtaaaaagattga |
2226299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 2226560 - 2226443
Alignment:
| Q |
64 |
ttcatcgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattacatttggtttatg |
163 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||||| ||||| || ||||||||| ||||||||||||||||| |||| ||||| ||||| |||| |
|
|
| T |
2226560 |
ttcatcgttttcttgtttcttggctatagaaatgtctaaagatttcacctttttcactcttttgttttggatctgcatatttcatcgcatttaccctatg |
2226461 |
T |
|
| Q |
164 |
ttacattgctaaagtatt |
181 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
2226460 |
ttacatagctaaagtatt |
2226443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 36246915 - 36247043
Alignment:
| Q |
54 |
atcctttcgtttcatcgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattacat |
153 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||| ||||| ||||| || ||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
36246915 |
atcctttctcttcattgtttggttgtttcttagctatcgaaatgtctaaagatttcacctttttcactcttttgttttggatctacaaagttcatcacat |
36247014 |
T |
|
| Q |
154 |
ttggtttatgttacattgctaaagtattg |
182 |
Q |
| |
|
|| ||||||||||| |||||||||||| |
|
|
| T |
36247015 |
ttaccttatgttacatagctaaagtattg |
36247043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 36247113 - 36247176
Alignment:
| Q |
261 |
gagaaaaattgtatttttagatttgggtttttatctaagatgaagattggagtaaaaagattga |
324 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| ||||||||||| || || |||| |||||| |
|
|
| T |
36247113 |
gagaaaaattatattttaagatttgggtttttatttaagatgaagaatgaagcaaaatgattga |
36247176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 19181015 - 19180897
Alignment:
| Q |
64 |
ttcatcgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattacatttggtttatg |
163 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||||||||| ||||||| |||||| || || |
|
|
| T |
19181015 |
ttcatcgtttggttgtttcttagctatcgaaatgtctaaagatttcaactttttcactcttttgttttggatctacacagttcatcacatttaccttgtg |
19180916 |
T |
|
| Q |
164 |
ttacattgctaaagtattg |
182 |
Q |
| |
|
||| || |||||||||||| |
|
|
| T |
19180915 |
ttaaatagctaaagtattg |
19180897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 19180827 - 19180766
Alignment:
| Q |
261 |
gagaaaaattgtatttttagatttgggtttttatctaagatgaagattggagtaaaaagatt |
322 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||| ||||||||||| ||||| |||| |||| |
|
|
| T |
19180827 |
gagaaaaattatattttaagatttaagtttttatttaagatgaagaatggagaaaaaggatt |
19180766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University