View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8610_low_5 (Length: 390)

Name: NF8610_low_5
Description: NF8610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8610_low_5
NF8610_low_5
[»] chr7 (8 HSPs)
chr7 (18-383)||(27651503-27651870)
chr7 (271-346)||(4674876-4674952)
chr7 (226-315)||(43208669-43208758)
chr7 (321-383)||(23944095-23944158)
chr7 (322-380)||(34891553-34891612)
chr7 (322-383)||(22593565-22593624)
chr7 (250-315)||(32988581-32988646)
chr7 (263-315)||(33362476-33362527)
[»] chr2 (7 HSPs)
chr2 (263-386)||(16576208-16576333)
chr2 (227-345)||(16863382-16863499)
chr2 (274-383)||(38576930-38577041)
chr2 (263-346)||(2248967-2249051)
chr2 (350-386)||(17606618-17606654)
chr2 (291-346)||(34176631-34176687)
chr2 (229-386)||(35370325-35370483)
[»] chr5 (5 HSPs)
chr5 (228-346)||(972754-972873)
chr5 (315-382)||(2243310-2243378)
chr5 (229-345)||(7982412-7982529)
chr5 (250-346)||(37077601-37077696)
chr5 (320-382)||(7215291-7215353)
[»] chr8 (7 HSPs)
chr8 (263-333)||(39280913-39280984)
chr8 (226-383)||(37010338-37010497)
chr8 (263-345)||(7590347-7590430)
chr8 (315-383)||(12736067-12736136)
chr8 (275-374)||(34695801-34695902)
chr8 (322-371)||(32166640-32166690)
chr8 (350-383)||(29093585-29093618)
[»] chr1 (7 HSPs)
chr1 (263-374)||(3231918-3232031)
chr1 (272-374)||(38839663-38839765)
chr1 (263-315)||(45136781-45136833)
chr1 (296-382)||(52432654-52432742)
chr1 (227-346)||(2534447-2534566)
chr1 (250-338)||(3367706-3367794)
chr1 (320-371)||(46080989-46081041)
[»] chr3 (5 HSPs)
chr3 (226-371)||(54437561-54437707)
chr3 (263-346)||(7641808-7641892)
chr3 (317-383)||(20519289-20519356)
chr3 (227-286)||(46303295-46303354)
chr3 (263-346)||(21570329-21570412)
[»] chr6 (2 HSPs)
chr6 (320-374)||(32047192-32047247)
chr6 (277-315)||(30669728-30669766)
[»] chr4 (5 HSPs)
chr4 (228-287)||(22050625-22050683)
chr4 (229-287)||(25062245-25062303)
chr4 (320-380)||(54000043-54000104)
chr4 (226-286)||(11020167-11020227)
chr4 (350-386)||(22050901-22050937)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 27651870 - 27651503
Alignment:
Q  18 cttcctaatagggaaaaactaatcttgatagcataattcagtgttttaacataaccatgtaacataatatttt--gataatgctccaacacacatttaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  27651870 cttcctaatagggaaaaactaatcttgatagcataattcagtgttttaacataaccatgtaacataatattttttgataatgctccaacacacatttaat 27651771  T
Q  116 ggcacaaatgattgattcattggnnnnnnntcaccatacttttaaagtgatcaatttacaagaccaatatatggagtttctataaagcaaatcaatcaat 215  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27651770 ggcacaaatgattgattcattggaaaaaaatcaccatacttttaaagtgatcaatttacaagaccaatatatggagtttctataaagcaaatcaatcaat 27651671  T
Q  216 gttatagcagtggttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  27651670 gttatagcagtggttttttctacgttactccttcatgatttgggggcaatttagccctatcaaagaaaaattcatttttcttcatctttatttttacaat 27651571  T
Q  316 agtaaccattttcatctcaagaacatcaaacaactcatctccttcattcaacatgtgatgtccatctc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27651570 agtaaccattttcatctcaagaacatcaaacaactcatctccttcattcaacatgtgatatccatctc 27651503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 4674876 - 4674952
Alignment:
Q  271 cctatcaaagaaaaattcacttttcttcatctttattttt-acaatagtaaccattttcatctcaagaacatcaaac 346  Q
    ||||||||| ||||| || |||||||| |||||||||||| | | |||| ||||||||||||||||||| |||||||    
T  4674876 cctatcaaacaaaaactcccttttctttatctttatttttgaaattagttaccattttcatctcaagaaaatcaaac 4674952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 315
Target Start/End: Original strand, 43208669 - 43208758
Alignment:
Q  226 tggttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat 315  Q
    ||||||||||||| |||  |||| |||| ||| ||| |||||| ||||||| || ||||| | | ||||||||||||||||| |||||||    
T  43208669 tggttttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttatttttcttcatctttattcttacaat 43208758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 23944095 - 23944158
Alignment:
Q  321 ccattttcatctcaagaacatcaaacaact-catctccttcattcaacatgtgatgtccatctc 383  Q
    |||||||||||| |||||||||||||  || | |||| ||||||||||||||||| ||||||||    
T  23944095 ccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctc 23944158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 34891553 - 34891612
Alignment:
Q  322 cattttcatctcaagaacatcaaacaact-catctccttcattcaacatgtgatgtccat 380  Q
    |||||| |||||||||||||||||   || |||||||||||||||||||||||| |||||    
T  34891553 cattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccat 34891612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 22593624 - 22593565
Alignment:
Q  322 cattttcatctcaagaacatcaaacaactcatctccttcattcaacatgtgatgtccatctc 383  Q
    |||||||||||||||||||||||||   ||||||  ||||||||||||||||| || |||||    
T  22593624 cattttcatctcaagaacatcaaac--ttcatctatttcattcaacatgtgatatctatctc 22593565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 32988646 - 32988581
Alignment:
Q  250 atgatttgggggcaatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat 315  Q
    |||| ||||||| ||||||| | ||||||||||||||    ||||||||||||||||| |||||||    
T  32988646 atgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaat 32988581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 33362527 - 33362476
Alignment:
Q  263 aatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat 315  Q
    ||||||||  |||||||||||||||| ||||||||||| ||| ||||||||||    
T  33362527 aatttacctatatcaaagaaaaattctcttttcttcat-tttttttttacaat 33362476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 386
Target Start/End: Original strand, 16576208 - 16576333
Alignment:
Q  263 aatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaacaac-tcatctccttc 360  Q
    |||||| ||||||||||||||||||  |||||||||| |||| || ||||||| | | ||||||||| |||||||||||||||||  | |||||||||||    
T  16576208 aatttagccctatcaaagaaaaattatcttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttc 16576307  T
Q  361 attcaacatgtgatgtccatctcatt 386  Q
    |||||||||||||| ||| |||||||    
T  16576308 attcaacatgtgatctccttctcatt 16576333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 345
Target Start/End: Original strand, 16863382 - 16863499
Alignment:
Q  227 ggttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccatt 325  Q
    |||||||||||| |||| ||  ||||| ||||||  |||||| || ||||||||||||||||  |||||||| |||||||| ||||||| ||| ||||||    
T  16863382 ggttttttctacattaccccaccatgaattggggt-aatttatccatatcaaagaaaaattcctttttcttc-tctttattcttacaatcagttaccatt 16863479  T
Q  326 ttcatctcaagaacatcaaa 345  Q
    ||||||||||||||||||||    
T  16863480 ttcatctcaagaacatcaaa 16863499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 38577041 - 38576930
Alignment:
Q  274 atcaaagaaaaat-tcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaacaact-catctccttcattcaacatg 370  Q
    ||||||||||||| ||| |||||||||| |||||||||| ||| ||| ||||||||||||| |||||||| |||   || |||||| |||||||||||||    
T  38577041 atcaaagaaaaatctca-ttttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatg 38576943  T
Q  371 tgatgtccatctc 383  Q
    |||| ||||||||    
T  38576942 tgatttccatctc 38576930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 2249051 - 2248967
Alignment:
Q  263 aatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac 346  Q
    |||||||| |||||||||||||||    ||||||||||||||||| ||| ||| ||| |||||||||||||||| ||||| ||||    
T  2249051 aatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaac 2248967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 17606654 - 17606618
Alignment:
Q  350 tcatctccttcattcaacatgtgatgtccatctcatt 386  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17606654 tcatctccttcattcaacatgtgatatccatctcatt 17606618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 34176631 - 34176687
Alignment:
Q  291 ttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac 346  Q
    |||||||||||||||||| |||||| ||| ||||||||||||| ||||| |||||||    
T  34176631 ttttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaac 34176687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 386
Target Start/End: Original strand, 35370325 - 35370483
Alignment:
Q  229 ttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaattcacttttcttcatctttat--ttttacaat-agtaaccatt 325  Q
    |||||||||| |||| |||| |||| || |  | |||| ||| |||||||||||||||   ||||||||||||||||   | ||||||| ||| ||||||    
T  35370325 ttttttctacattaccccttgatgaattagtagtaattgaccactatcaaagaaaaat---cttttcttcatctttacgatcttacaatcagttaccatt 35370421  T
Q  326 ttcatctcaagaacatcaaacaact-catctccttcattcaacatgtgatgtccatctcatt 386  Q
    || |||||||||| | |||||  || | ||||||||||||||||||| ||  ||||||||||    
T  35370422 ttaatctcaagaataccaaacttcttcgtctccttcattcaacatgtaatacccatctcatt 35370483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 346
Target Start/End: Original strand, 972754 - 972873
Alignment:
Q  228 gttttttctacgttactccttcatgatttgggggcaatttacccctatcaaag-aaaaattcacttttcttcatctttatttttacaa-tagtaaccatt 325  Q
    |||||||| ||||||  |||| |||||||||||| |||||| || | |||||| ||||||||| |||| ||| |||||||||||| || |||| | ||||    
T  972754 gttttttcgacgttatcccttaatgatttgggggtaatttatccatttcaaagaaaaaattca-tttttttcctctttatttttaaaattagttatcatt 972852  T
Q  326 ttcatctcaagaacatcaaac 346  Q
    |||||||||||||||||||||    
T  972853 ttcatctcaagaacatcaaac 972873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 2243378 - 2243310
Alignment:
Q  315 tagtaaccattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgtgatgtccatct 382  Q
    |||| |||||||||||||||||||||||||||  | |||| |||||||||||||||||||| |||||||    
T  2243378 tagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 7982529 - 7982412
Alignment:
Q  229 ttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaa-attcacttttcttcatctttatttttacaat-agtaaccattt 326  Q
    ||||||||||||| | |||| ||| |||||||| ||||||||||| ||||||||||  ||||| ||| || ||||||||| ||| ||| ||| |||||||    
T  7982529 ttttttctacgtttccccttgatgttttgggggtaatttacccctttcaaagaaaattttcaccttt-ttaatctttattgttaaaatcagttaccattt 7982431  T
Q  327 tcatctcaagaacatcaaa 345  Q
    ||||||  |||||||||||    
T  7982430 tcatcttgagaacatcaaa 7982412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 346
Target Start/End: Original strand, 37077601 - 37077696
Alignment:
Q  250 atgatttgggggcaatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaatagtaaccattttcatctcaagaacatcaaac 346  Q
    |||||||||||  ||||||||||||| ||||| |  |||| |||||| |||||||||| ||| |  ||| | |||||||||||||||||||| ||||    
T  37077601 atgatttggggataatttacccctattaaagagattttca-ttttctccatctttattcttaaatcagttatcattttcatctcaagaacattaaac 37077696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 7215353 - 7215291
Alignment:
Q  320 accattttcatctcaagaacatcaaacaactcatctccttcattcaacatgtgatgtccatct 382  Q
    |||||||||||||||||||||||||||  ||  ||| ||||||| || ||||||| |||||||    
T  7215353 accattttcatctcaagaacatcaaacttcttttcttcttcattgaatatgtgatctccatct 7215291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 39280913 - 39280984
Alignment:
Q  263 aatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctc 333  Q
    |||||||||||||||||||||||| | |||||||||||||||||| ||| ||| ||| ||||||||||||||    
T  39280913 aatttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccattttcatctc 39280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 383
Target Start/End: Complemental strand, 37010497 - 37010338
Alignment:
Q  226 tggttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaa-ttcacttttcttcatctttatttttacaat-agtaacca 323  Q
    |||||||||||||||| |   || |||||||||||| | |||||| || || |||||||| |||| |||| |||||||||||||| | ||| ||| ||||    
T  37010497 tggttttttctacgttgccatttgatgatttgggggtagtttacctctttctaagaaaaaattcattttt-ttcatctttattttaaaaattagttacca 37010399  T
Q  324 ttttcatctcaagaacatcaaac-aactcatctccttcattcaacatgtgatgtccatctc 383  Q
    |||||||||||| ||||||||||  | |||| || |||||| |||||||||| || |||||    
T  37010398 ttttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctc 37010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 7590430 - 7590347
Alignment:
Q  263 aatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaa 345  Q
    ||||||||||||| | ||||||| ||| |||||||| |||||||| |||||||  || |||| |||||| ||||||||||||||    
T  7590430 aatttacccctattatagaaaaactcatttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaa 7590347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 12736067 - 12736136
Alignment:
Q  315 tagtaaccattttcatctcaagaacatcaaacaact-catctccttcattcaacatgtgatgtccatctc 383  Q
    |||| ||||||| ||||| || ||||||||||  || |||||||||| ||||||||||||||||||||||    
T  12736067 tagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 34695801 - 34695902
Alignment:
Q  275 tcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgtg 372  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||| | ||||||| | |||| |  ||||||   | ||| |||||||||||||||||||    
T  34695801 tcaaagaaaaattctcttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtg 34695900  T
Q  373 at 374  Q
    ||    
T  34695901 at 34695902  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 32166690 - 32166640
Alignment:
Q  322 cattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgt 371  Q
    |||||||||||||||||||||||||  | |||||||||| |||||||||||    
T  32166690 cattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgt 32166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 29093585 - 29093618
Alignment:
Q  350 tcatctccttcattcaacatgtgatgtccatctc 383  Q
    ||||||||||||||||||||||||| ||||||||    
T  29093585 tcatctccttcattcaacatgtgatctccatctc 29093618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 374
Target Start/End: Original strand, 3231918 - 3232031
Alignment:
Q  263 aatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaacaac-tcatctccttc 360  Q
    |||||| || ||| ||||||||| ||| |||||||||| ||||| |||||||| |||  | |||||||||||||||||| |||||  | |||| || |||    
T  3231918 aatttatccatataaaagaaaaactcatttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattc 3232017  T
Q  361 attcaacatgtgat 374  Q
    ||||||||||||||    
T  3232018 attcaacatgtgat 3232031  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 374
Target Start/End: Complemental strand, 38839765 - 38839663
Alignment:
Q  272 ctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaacaac-tcatctccttcattcaacat 369  Q
    |||||||||||||||  | |||| |||||||||||| ||||||| ||| |  ||||||||||||||||||||||||  | |||||| |||||||| ||||    
T  38839765 ctatcaaagaaaaatctaatttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttcttcattcgacat 38839668  T
Q  370 gtgat 374  Q
    |||||    
T  38839667 gtgat 38839663  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 45136833 - 45136781
Alignment:
Q  263 aatttacccctatcaaagaaaaat-tcacttttcttcatctttatttttacaat 315  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  45136833 aatttacccctatcaaagaaaaatctca-ttttcttcatctttattcttacaat 45136781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 382
Target Start/End: Original strand, 52432654 - 52432742
Alignment:
Q  296 ttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgtgatgtccatct 382  Q
    |||||||||||| ||| ||| | | |||||||||||||||||||||| ||||  | |||||||||||||| |||| ||||| |||||||    
T  52432654 ttcatctttattcttataatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 2534566 - 2534447
Alignment:
Q  227 ggttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaa-ttcacttttcttcatctttatttttacaat-agtaaccat 324  Q
    |||||||||||||||  ||||| |||||||| ||  | ||||||  | ||||||||||  |||| ||||||||||||||||||||| ||| | | ||||     
T  2534566 ggttttttctacgttgttccttgatgatttgaggtga-tttaccattttcaaagaaaatcttca-ttttcttcatctttatttttaaaataatttaccac 2534469  T
Q  325 tttcatctcaagaacatcaaac 346  Q
    ||||||||||| ||||||||||    
T  2534468 tttcatctcaaaaacatcaaac 2534447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 3367706 - 3367794
Alignment:
Q  250 atgatttgggggcaatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaa 338  Q
    |||| ||||| | |||||||| |||| |||||||| |||| ||||||||||||||||| |||| || ||| | | |||||||||||||||    
T  3367706 atgaattgggagtaatttacctctattaaagaaaa-ttcatttttcttcatctttattcttacgatcagttatcgttttcatctcaagaa 3367794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 46080989 - 46081041
Alignment:
Q  320 accattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgt 371  Q
    |||||||||||||||||||||| ||||  | |||||||||||| |||||||||    
T  46080989 accattttcatctcaagaacattaaacttcttcatctccttcactcaacatgt 46081041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 371
Target Start/End: Original strand, 54437561 - 54437707
Alignment:
Q  226 tggttttttctacgttactccttcatgatttgggggcaatttacccctatcaaa-gaaaaattcacttttcttcatctttatttttacaa-tagtaacca 323  Q
    |||||||||||||||||| ||||||| | ||  ||| |||||| |||||||||| |||||| ||| ||||| ||||||||||| ||||||  | | ||||    
T  54437561 tggttttttctacgttaccccttcataaattaagggtaattta-ccctatcaaaggaaaaactca-ttttcctcatctttattattacaacaaattacca 54437658  T
Q  324 ttttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgt 371  Q
    |||||||||||| ||||| ||||  | |||| ||||||||| |||||||    
T  54437659 ttttcatctcaataacattaaacttcttcatatccttcatttaacatgt 54437707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 7641808 - 7641892
Alignment:
Q  263 aatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac 346  Q
    |||||||||||||||||||||| ||   ||||||||| ||||||| ||| ||| ||| | |||||| || |||||||||||||||    
T  7641808 aatttacccctatcaaagaaaattttcattttcttcaactttattcttaaaatcagttatcatttttatatcaagaacatcaaac 7641892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 20519356 - 20519289
Alignment:
Q  317 gtaaccattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgtgatgtccatctc 383  Q
    ||||||||||||||||||||||| |||||   | ||||||| |||||| |||||||||| ||||||||    
T  20519356 gtaaccattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctc 20519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 46303295 - 46303354
Alignment:
Q  227 ggttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaat 286  Q
    |||||||||||| ||| ||||| |||| ||||| | ||||||| ||||||||||||||||    
T  46303295 ggttttttctacattattccttgatgaattgggagtaatttactcctatcaaagaaaaat 46303354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 21570329 - 21570412
Alignment:
Q  263 aatttacccctatcaaagaaaaattcacttttcttcatctttatttttacaatag-taaccattttcatctcaagaacatcaaac 346  Q
    |||||| || ||||||| ||| ||||| ||||||| ||||||||| ||||||| | | || ||||||||| ||||||||||||||    
T  21570329 aatttatccatatcaaa-aaatattcatttttctttatctttattcttacaattgattactattttcatcacaagaacatcaaac 21570412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 32047192 - 32047247
Alignment:
Q  320 accattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgtgat 374  Q
    |||||||||||||||||||||||||||  | ||||||| |||||||||||| ||||    
T  32047192 accattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 30669766 - 30669728
Alignment:
Q  277 aaagaaaaattcacttttcttcatctttatttttacaat 315  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  30669766 aaagaaaaattcatttttcttcatctttattcttacaat 30669728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 22050625 - 22050683
Alignment:
Q  228 gttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaatt 287  Q
    |||||||||||||||| |||| ||||||| |||| ||||||||||| | |||||||||||    
T  22050625 gttttttctacgttaccccttgatgattt-ggggtaatttaccccttttaaagaaaaatt 22050683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 25062245 - 25062303
Alignment:
Q  229 ttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaatt 287  Q
    |||||||||| |||| | ||  ||||||||||| ||||||||| |||||||||||||||    
T  25062245 ttttttctacattaccctttactgatttgggggtaatttacccatatcaaagaaaaatt 25062303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 54000104 - 54000043
Alignment:
Q  320 accattttcatctcaagaacatc-aaacaactcatctccttcattcaacatgtgatgtccat 380  Q
    ||||||||||||||||||||||| ||| || ||||| | || |||||||||||||| |||||    
T  54000104 accattttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctccat 54000043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 11020227 - 11020167
Alignment:
Q  226 tggttttttctacgttactccttcatgatttgggggcaatttacccctatcaaagaaaaat 286  Q
    |||||||||||||| ||| |||| |||| ||||||  ||||||||  ||||||||||||||    
T  11020227 tggttttttctacgataccccttaatgaattggggtaaatttaccaatatcaaagaaaaat 11020167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 22050901 - 22050937
Alignment:
Q  350 tcatctccttcattcaacatgtgatgtccatctcatt 386  Q
    ||||||||||||||||||||||||| | |||||||||    
T  22050901 tcatctccttcattcaacatgtgatcttcatctcatt 22050937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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