View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8611_high_2 (Length: 260)
Name: NF8611_high_2
Description: NF8611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8611_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 54350672 - 54350440
Alignment:
| Q |
17 |
ataacatcctaattattttattgaatgggtgaaggccgtaaaggggacactcgttgctcagatacaatgtttagcataagttgtattcgacaaaaacagt |
116 |
Q |
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| T |
54350672 |
ataacatcctaattattttattgaatgggtgaaggccgtaaaggggacactcgttgctcagatacaatgtttaacataagttgtattcgacaaaaacagt |
54350573 |
T |
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| Q |
117 |
attgtattactagaacgttggcacatgcgaccttgtgttgtggtttttctgtgagatggtcaccaccaccacatgcactaacgccgacaagtcatgtcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54350572 |
attgtattactagaacgttggcacatgcgaccttgtgttgtggtttttctgtgagatggtcaccaccaccacatgcactaacgccgacaagtcatgtcac |
54350473 |
T |
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| Q |
217 |
gtatctctcgtttcagctcatatttttgttctt |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
54350472 |
gtatctctcgtttcagctcatatttttgttctt |
54350440 |
T |
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