View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8611_low_3 (Length: 381)
Name: NF8611_low_3
Description: NF8611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8611_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 145 - 362
Target Start/End: Original strand, 27730364 - 27730581
Alignment:
| Q |
145 |
aaggtttcaaattcctcctcctgagcctttattttccttacctgctcttgcacagcagcaatctcttcatcctcttgtgaaacacctaaatcatcttccc |
244 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27730364 |
aaggtttcaaattcctcctcctgagcctttatttgccttacctgctcttgcacagcagcaatctcttcatcctcttgtgaaacacctaaatcatcttccc |
27730463 |
T |
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| Q |
245 |
ttgtaatgtcaacttcttcatcatccttttctagcttgacatgctctttatcagcatacccataattatcgacagtaattggagaagagttcgaagatct |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
27730464 |
ttgtaatgtcaacttcttcatcatccttttctagcttgacatgctctttatcagcgtacccgtaattatcgacagtagttggagaagagttcgaagatct |
27730563 |
T |
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| Q |
345 |
aaccgcatgagcattatt |
362 |
Q |
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||||||||||||||||| |
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| T |
27730564 |
gaccgcatgagcattatt |
27730581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 145 - 362
Target Start/End: Original strand, 27710351 - 27710568
Alignment:
| Q |
145 |
aaggtttcaaattcctcctcctgagcctttattttccttacctgctcttgcacagcagcaatctcttcatcctcttgtgaaacacctaaatcatcttccc |
244 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27710351 |
aaggtttcaagttcctcctcctgagcctttatttgccttacctgctcttgcacagcagcaatctcttcatcctcttgtgaaacacctaaatcatcttccc |
27710450 |
T |
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| Q |
245 |
ttgtaatgtcaacttcttcatcatccttttctagcttgacatgctctttatcagcatacccataattatcgacagtaattggagaagagttcgaagatct |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| |
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| T |
27710451 |
ttgtaatgtcaacttcttcatcatccttttctagcttgacatgctctttatcagcgtacccgtaattatcgacagtagttggagacgagttcgaagatct |
27710550 |
T |
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| Q |
345 |
aaccgcatgagcattatt |
362 |
Q |
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|||||| ||||||||||| |
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| T |
27710551 |
aaccgcgtgagcattatt |
27710568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 27730198 - 27730320
Alignment:
| Q |
19 |
ttaaaattacaatgtagggatgaacaaaactaatatc-tattagttctaaaactattcttaacttttattaaataaaactcaaaaacatcgcaaatcaat |
117 |
Q |
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|||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||| || ||||||||||||||| || || | |||||||||| |
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| T |
27730198 |
ttaaaattacaatgtagggatgaacaaagctgatatcatattagttctaaaactcttcttaatttctattaaataaaactcgaatactttgcaaatcaat |
27730297 |
T |
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| Q |
118 |
gaaaatggtaaacatgcttatat |
140 |
Q |
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||||||| ||||||||||||||| |
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| T |
27730298 |
gaaaatgctaaacatgcttatat |
27730320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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