View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8611_low_5 (Length: 307)
Name: NF8611_low_5
Description: NF8611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8611_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 29107593 - 29107869
Alignment:
| Q |
16 |
atgaaccacattttttccttaattttcagtcgtgnnnnnnnnactagaattttcagttgtgttgttaaataaagaaataacacagtattttcttttctta |
115 |
Q |
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| T |
29107593 |
atgaaccacattttttccttaattttcagtcgtgttttttttactagatttttcagttgtgttgttaaataaagaaatgacacagtattttcttttctta |
29107692 |
T |
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| Q |
116 |
aataaatattaggtggacttaatggatttcgtacaggtcaatacgtgataactaaattgtttgatcattatacaaactgtaaattagttttgaggtaatt |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29107693 |
aataaatattaggtggacttaatagatttcgtacaggtcaatacgtgataactaaattgtttgatcattatacaaattgtaaattagttttgaggtaatt |
29107792 |
T |
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| Q |
216 |
gtaaattagttgtaacgatataaattattatttaagaatgcattaatttaaactaaattataaatagagaataatct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29107793 |
gtaaattagttgtaacgatataaattattatttaagaatgcattaatttaaactaaattataaatagagaataatct |
29107869 |
T |
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