View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8612_high_4 (Length: 252)
Name: NF8612_high_4
Description: NF8612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8612_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 1183160 - 1183342
Alignment:
| Q |
9 |
tttgcagcttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagtggaaaatcctttgaagctgaaatttaataacaaacaaataa |
108 |
Q |
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| T |
1183160 |
tttgcagcttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagtagaaaatcctttgaagctgaaatttaataaca----aataa |
1183255 |
T |
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| Q |
109 |
gctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttgaaactaggttatatttcatcatggaacaagtgaca |
195 |
Q |
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| T |
1183256 |
gctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttgaaactaggttatatttcatcatggaacaagtgaca |
1183342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 1183580 - 1183627
Alignment:
| Q |
197 |
tttcattaattaatgaaaaccataacaaacttctaacactttcttctc |
244 |
Q |
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| T |
1183580 |
tttcattaattaatgaaaaccataacaaacttcaaacactttcttctc |
1183627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 5706782 - 5706834
Alignment:
| Q |
16 |
cttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagtg |
68 |
Q |
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| T |
5706782 |
cttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtg |
5706834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 18641491 - 18641439
Alignment:
| Q |
16 |
cttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagtg |
68 |
Q |
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| T |
18641491 |
cttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtg |
18641439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 32368201 - 32368156
Alignment:
| Q |
125 |
agaatcctatagcacatggaagaagtaaacacgttgaaactaggtt |
170 |
Q |
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| T |
32368201 |
agaatccaatagcacatggcaggagtaaacacattgaaactaggtt |
32368156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 5243516 - 5243601
Alignment:
| Q |
110 |
ctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttgaaactaggttatatttcatcatggaacaagtgaca |
195 |
Q |
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| T |
5243516 |
ctataaatttagctaacaatctaataacacatggtaggagaaaacacattgaaactaggtttcatttcataagggaacaagtgaca |
5243601 |
T |
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