View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8612_low_1 (Length: 491)
Name: NF8612_low_1
Description: NF8612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8612_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Original strand, 229161 - 229608
Alignment:
| Q |
10 |
atgaatgtctcaagaatgcaaacaatgtatgtagtaataaactcccatatcacatcgagaaaataataataatatatagaggtaaaaataacaatctgag |
109 |
Q |
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| T |
229161 |
atgaatgtctcaagaatgcaaacaatgtatgtagtaataaactcccatatcacatcgagaaaata---ataatatatagaggtaaaaataacaatctgag |
229257 |
T |
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| Q |
110 |
ttctgaagagaagacagaggtatcgatctagaacagcaaggacaggaaagcacatccaaatactaatccaaccatcttatgtgaccacaacttctctgcc |
209 |
Q |
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| T |
229258 |
ttctgaagagaagacagaggtatcgatctagaacagcaaggacaggaaagcacatccaaatactaatccaaccatcttatgtgaccacaacttctctgcc |
229357 |
T |
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| Q |
210 |
ccactctgcaatgcaatatacccacaaaattaattaggctaacaatttactatgtttgcatcaaaacgatgtgcacacacaaaatttggctagaaaatag |
309 |
Q |
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| T |
229358 |
ccactctgcaatgcaatatacccacaaaattaattaggctaacaatttactatgtttgcatcaaaacgatgtgcacacacaaaatttggctagaaaatag |
229457 |
T |
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| Q |
310 |
tggaatgatagataaagtagaagaaaaggaagcttagtttataaataaacatgttttttaattaggaaaggcaacatatacatttacgaaccgaaatatt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
229458 |
tggaatgatagataaagtagaagaaaaggaagcttagtttatacataaacatgttttttaattaggaa-------------atttacgaaccgaaatatt |
229544 |
T |
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| Q |
410 |
tgatctcgaaataaagctttgatatgagtcaaactaaagggttgtgtatgatatggggatcaac |
473 |
Q |
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| T |
229545 |
tgatctcgaaataaagctttgatatgagtcaaactaaagggttgtgtatgatatggggatcaac |
229608 |
T |
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