View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8612_low_2 (Length: 462)
Name: NF8612_low_2
Description: NF8612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8612_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 31853272 - 31853006
Alignment:
| Q |
16 |
acatcaacatgaacgtgaacatgaacatgaagaggatgaaaatccttatgtttttgaagacagagattttgaaaccaaaatagaaacagatgatggtaga |
115 |
Q |
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| T |
31853272 |
acatcaacatgaacgtgaacatgaacatgaagaggatgaaaatccttatgtttttgaagacagagattttgaaaccaaaatagatacagatgatggtaga |
31853173 |
T |
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| Q |
116 |
gttatggctctaaacatgtttgatcaaaaatcaaagctgctcagaaactttgagaattatggtttgaccattttagaagctaaaggacatgcttttgttt |
215 |
Q |
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| T |
31853172 |
gttatggctctaaacatgtttgatcaaaaatcaaagctgcttagaaactttgagaattatggtttgaccattttagaagctaaaggacatgcttttgttt |
31853073 |
T |
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| Q |
216 |
caccacaccactttgattctgaggttattttcttcaacgtcaagggtatgtattaaaaaacaaccaa |
282 |
Q |
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| T |
31853072 |
caccacaccactttgattctgaggttattttcttcaacgtcaagggtatgtattaaaaaacaaccaa |
31853006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 347 - 443
Target Start/End: Complemental strand, 31852941 - 31852845
Alignment:
| Q |
347 |
ccttgttgaattactatagggagaggaataattgggttggtgatggaagataaaaccgagagatttaaccttgaagctggtgacattatgagggtac |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31852941 |
ccttgttgaattactatagggagaggaataattgggttggtgatggaagataaaaccgagagatttaaccttgaagctggtgacattatgagggtac |
31852845 |
T |
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