View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8612_low_3 (Length: 283)
Name: NF8612_low_3
Description: NF8612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8612_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 18600258 - 18599985
Alignment:
| Q |
10 |
acctttacttgtggacatcaattccaacaattttctattgcatgttggtgaaaattttcgttcaagaatcacctagatggcttctattgaaaggnnnnnn |
109 |
Q |
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| T |
18600258 |
acctttacttgtggacatcaattcctacaattttctattgcatgttggtgaaaattttcgttcaagaatcacctagatggcttctattgaaaggaaaaga |
18600159 |
T |
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| Q |
110 |
ngaagaagcaatagctacactaaaatacatcacttcaatcactcaaagtaacctaaatttatccatcaacaacatgtcttcacatgaggaagaaaataat |
209 |
Q |
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| T |
18600158 |
agaagaagcaatagctacactaaaatacatcacttcaatcactcaaagtaacctaaatttatccatcaacaacatgtcttcacatgaggaagaaaataat |
18600059 |
T |
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| Q |
210 |
ttaaatgttgatttgttttatgccctcaaacttttgttgcaaaagaaatgatcctcaaggagactattattgat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18600058 |
ttaaatgttgatttgttttatgccctcaaacttttgttgcaaaagaaatggtcctcaaggagactattattgat |
18599985 |
T |
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