View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_high_2 (Length: 724)
Name: NF8613_high_2
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_high_2 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 618; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 13 - 724
Target Start/End: Complemental strand, 14526510 - 14525786
Alignment:
| Q |
13 |
gaaccccttcaattcaatgatccttttcttcaaagaatatctagggtatgtttggtttgttgttataggatggaatagagtggaatggaatataatagac |
112 |
Q |
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| T |
14526510 |
gaaccccttcaattcaatgatccttttcttcaaagaatatctagggtatgtttggtttgttgttataggatggaatagagtggaatggaatataatagac |
14526411 |
T |
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| Q |
113 |
tagtcagtttnnnnnnnttgatgttatatcattccataacatcatcagatgaactgtatgtcaatatcagattatcagtgtcatttgcctctaaactata |
212 |
Q |
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| T |
14526410 |
tagtcagtttaaaaaaattgatgttatatcattccataacatcatcagatgaactgtatgtcaatatcagattatcagtgtcatttgcctctaaactata |
14526311 |
T |
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| Q |
213 |
atgattttcaattgaacacctcctaaattattttaaaatgttgtgtttggactacccctaactattatataggcatcaattttctcat------------ |
300 |
Q |
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| T |
14526310 |
atgattttcaattgaacacctcctaaattattttaaaatgttgtgtttggactacccctaactattatataggcatcaattttctcatcacacagtgttt |
14526211 |
T |
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| Q |
301 |
--gcacacttattcactcattacccttcaatcaagcatcagaaaaaggcatgctaaaacctggaaaagccttctaagaaatatatcccttccctttttac |
398 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14526210 |
ttgcttacttattcactcattaccctacaatcaagcatcagaaaa-ggcacgctaaaacctggaaaagccttctaagaaatatatcccttccctttttac |
14526112 |
T |
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| Q |
399 |
aacgcattcccagaagtatgataatttgagaaaaggaaagaacacagtgaaccacactgctagtcaaaattaaaaaaggccgcaaaattgttcaataaca |
498 |
Q |
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| T |
14526111 |
aacgcattcccagaagtatgataatttgagaaaaggaaagaacacactgaaccacactgctagtcaaaattaaaaaaggccgcaaaattgttcaataaca |
14526012 |
T |
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| Q |
499 |
ttatatgagtaatagaaactcccttaaaaattaaactttgcttaaaaagacaattaaagctttaatcacgaatctgagcacacctgctcggcttacatag |
598 |
Q |
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| T |
14526011 |
ttatatgagtaatagaaactcccttaaaaattaaactttgcttaaaaagacaattaaagctttaatcacgaatctgagcacacctgctcggcttacatag |
14525912 |
T |
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| Q |
599 |
tttgtttatactactaaggattcttgactgaacaaatatggaagaagaactgacaccatgagaaaacattccccgatcaaatgcaagaacattttgagct |
698 |
Q |
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| T |
14525911 |
tttgtttatactactaaggattcttgactgaacaaatatggaaggagaactaacaccatgagaaaacattccccgatcaaatgcaagaacattttgagct |
14525812 |
T |
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| Q |
699 |
ttctcacatctactagatataatgcc |
724 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
14525811 |
ttcttacatctactagatataatgcc |
14525786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 592 - 684
Target Start/End: Complemental strand, 14544679 - 14544587
Alignment:
| Q |
592 |
tacatagtttgtttatactactaaggattcttgactgaacaaatatggaagaagaactgacaccatgagaaaacattccccgatcaaatgcaa |
684 |
Q |
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| T |
14544679 |
tacatggtttgtatatactactaagggctcatgattgaacaaacatggaaggagaattaacaccatgagaaaacactccctgaccaaatgcaa |
14544587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 14538668 - 14538596
Alignment:
| Q |
316 |
cattacccttcaatcaagcatcagaaaaaggcatgctaaaacctggaaaagccttctaagaaatatatccctt |
388 |
Q |
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| T |
14538668 |
cattatccttcaaccagacatcaaacaaaggcatgctaaaaactggaaaagcattccaagaaatatatccctt |
14538596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 642
Target Start/End: Complemental strand, 14535103 - 14535053
Alignment:
| Q |
592 |
tacatagtttgtttatactactaaggattcttgactgaacaaatatggaag |
642 |
Q |
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| T |
14535103 |
tacatagtttgtttgtacttctaaggattcttgaccgaacaaacatggaag |
14535053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 419
Target Start/End: Complemental strand, 14554141 - 14554049
Alignment:
| Q |
326 |
caatcaagcatcagaaaaaggcatgctaaaacctggaaaagccttctaagaaatatatcccttccctttttacaacgcattcccagaagtatga |
419 |
Q |
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| T |
14554141 |
caatcaaacatctgataaaggcatgctaaaacct-gaaaagcctcccaagaaatacatctctttcattttcacaacacattaccaaaagtatga |
14554049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 634
Target Start/End: Complemental strand, 14538125 - 14538083
Alignment:
| Q |
592 |
tacatagtttgtttatactactaaggattcttgactgaacaaa |
634 |
Q |
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| T |
14538125 |
tacatagtttgtttttactactatggattcttgattgaacaaa |
14538083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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