View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8613_high_3 (Length: 645)
Name: NF8613_high_3
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6803706 - 6803630
Alignment:
| Q |
1 |
gtagaagctaaaagtacaaagaagtcttgtaaaccta--gagtttcgtgaaaccgaacttttaggtttaattcattc |
75 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6803706 |
gtagaagctaaaattacaaagaagtcttgtaaacctatagagtttcgtgaaaccgaacttttaggtttaattcattc |
6803630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 43288639 - 43288694
Alignment:
| Q |
94 |
ttgtaagttttaaactattattcccttgaaatcatccacaaggggtcaggtacaca |
149 |
Q |
| |
|
|||||||||||||||| || | |||||| ||||||||||||||||||||||||||| |
|
|
| T |
43288639 |
ttgtaagttttaaacttttctccccttggaatcatccacaaggggtcaggtacaca |
43288694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 43288715 - 43288775
Alignment:
| Q |
179 |
ttttgtgtgttgaaattgtaagagtattttgaatatgtttgagaaaatagtgattctatga |
239 |
Q |
| |
|
||||||||||||||||||| |||| || ||||||||||||| ||| |||||||||||||| |
|
|
| T |
43288715 |
ttttgtgtgttgaaattgtgagagcatgttgaatatgtttgtaaaattagtgattctatga |
43288775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 31399553 - 31399420
Alignment:
| Q |
108 |
ctattattcccttgaaatcatccacaaggggtcaggtacacactctaacttttaaacat-acaactgttgatttttgtgtgtt-gaaattgtaagagtat |
205 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||| |||||| |||||||||||||| | |||| ||||| |||| |||||| |||||||| ||||||| |
|
|
| T |
31399553 |
ctattactcccttgaaataatccacaacaggtcagatacacagtctaacttttaaacctcacaaatgttggttttgttgtgttagaaattgtgagagtat |
31399454 |
T |
|
| Q |
206 |
tttgaatatgtttgagaaaatagtgattctatgat |
240 |
Q |
| |
|
|| |||||||||| ||||| |||||||||||||| |
|
|
| T |
31399453 |
attaaatatgtttg-gaaaacagtgattctatgat |
31399420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 24044197 - 24044136
Alignment:
| Q |
94 |
ttgtaagttttaaactattattcccttgaaatcatccacaaggggtcaggtacacactctaa |
155 |
Q |
| |
|
||||||||||||||| | | || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24044197 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaaggggtcaggtacacattctaa |
24044136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 10940696 - 10940635
Alignment:
| Q |
94 |
ttgtaagttttaaactattattcccttgaaatcatccacaaggggtcaggtacacactctaa |
155 |
Q |
| |
|
||||||||||||||| | | || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10940696 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaaggggtcaggtacacattctaa |
10940635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 10946565 - 10946504
Alignment:
| Q |
94 |
ttgtaagttttaaactattattcccttgaaatcatccacaaggggtcaggtacacactctaa |
155 |
Q |
| |
|
||||||||||||||| | | || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10946565 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaaggggtcaggtacacattctaa |
10946504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 49390178 - 49390117
Alignment:
| Q |
94 |
ttgtaagttttaaactattattcccttgaaatcatccacaaggggtcaggtacacactctaa |
155 |
Q |
| |
|
||||||||||||||| | | || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49390178 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaaggggtcaggtacacattctaa |
49390117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 13816614 - 13816675
Alignment:
| Q |
94 |
ttgtaagttttaaactattattcccttgaaatcatccacaaggggtcaggtacacactctaa |
155 |
Q |
| |
|
||||||||||||||| | | || |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
13816614 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaatgggtcaggtacacattctaa |
13816675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University