View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_low_1 (Length: 343)
Name: NF8613_low_1
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 46150370 - 46150039
Alignment:
| Q |
1 |
ccgacccttatataatacaatatctttgtcaattgagctaagtttattaaacaaattattgttgcttttacacagatgttcataaacaaggtatctatat |
100 |
Q |
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| T |
46150370 |
ccgacccttatataatacaatatctttgtcaattaagctaagtttattaaacaaattattgttgcttttacacaaatgttcataaacaaggtatctatat |
46150271 |
T |
|
| Q |
101 |
atcaggataattataataattcagaaaatttagaaatgtcttccccatattcacccgaattccctccaatcttctc---nnnnnnnnaccttttacttta |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46150270 |
atcaggataattataataattcagaaaatttagaaatgtcttccccatattcacccgaattccctccaatcttctctttttctttttaccttttacttta |
46150171 |
T |
|
| Q |
198 |
atttcaactccaaccaattaatcagttcatataaattgatactttttcagtgttttatcgtttccgtattttgtagttttaaacattacaaagtatttgt |
297 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46150170 |
atttcaactccaaccaataaatcagttcatataaattgatactttttcggtgttttatcgtttccgtattttgtagttttaaacattaccaagtatttgt |
46150071 |
T |
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| Q |
298 |
cttttattttgtttgacaagaagtactatttg |
329 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46150070 |
cttttattttgtttgacaagaagtactatttg |
46150039 |
T |
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