View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_low_10 (Length: 374)
Name: NF8613_low_10
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_10 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 30228760 - 30229111
Alignment:
| Q |
11 |
catcatcaagtgcatgattaagtttaaatattatagtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtgg |
110 |
Q |
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||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30228760 |
catcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtgg |
30228859 |
T |
|
| Q |
111 |
tgttcttccatttagaatacttgtcacatagttactaacatatttgtcatataattcacatga---tgaatttatggtttcaggaaatatgggaatcttt |
207 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30228860 |
tgttcttccatttagaatacttgttacatagttactaacatatttgtcatataattcacatgatgatgaatttatggtttcaggaaatatgggaatcttt |
30228959 |
T |
|
| Q |
208 |
aagtgttcttcaggcttcacttcaaccttttgccatctcatcttaccctctacatcttttacctgtgcaaatcaattaatgaataataaaaggtcaattc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30228960 |
aagtgttcttcaggcttcacttcaaccttttgccatctcatcttaccctctacatcttttacctgtgcaaatcaattaatgaataataaaaggtcaattt |
30229059 |
T |
|
| Q |
308 |
tgattattgaaattatattcaatagaaattgactagccttaatgccttatat |
359 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30229060 |
tgattattgagattatattcaatagaaattgactagccttaatgccttatat |
30229111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 30048621 - 30048900
Alignment:
| Q |
11 |
catcatcaagtgcatgattaagtttaaatattatagtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtgg |
110 |
Q |
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||||| ||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
30048621 |
catcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtgg |
30048720 |
T |
|
| Q |
111 |
tgttcttccatttagaatacttgtcacatagttactaacatatttgtcatataattcacatga---tgaatttatggtttcaggaaatatgggaatcttt |
207 |
Q |
| |
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|||| || | |||||||||||| ||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30048721 |
tgtttttttagctagaatacttgttacatagtcactaagataattgtcatataattcacatgatgatgaatttatggtttcaggaaatatgggaatcttt |
30048820 |
T |
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| Q |
208 |
aagtgttcttcaggcttcacttcaaccttttgccatctcatcttaccctctacatcttttacctgtgcaaatcaattaat |
287 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
30048821 |
aagtgttcttcaggcttcacttcgaccttttgccatctcatctcaccctctttgtcttttacctgtgcaaattaattaat |
30048900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 30062962 - 30063241
Alignment:
| Q |
11 |
catcatcaagtgcatgattaagtttaaatattatagtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtgg |
110 |
Q |
| |
|
||||| ||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
30062962 |
catcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtgg |
30063061 |
T |
|
| Q |
111 |
tgttcttccatttagaatacttgtcacatagttactaacatatttgtcatataattcacatga---tgaatttatggtttcaggaaatatgggaatcttt |
207 |
Q |
| |
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|||| || | |||||||||||| ||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30063062 |
tgtttttttagctagaatacttgttacatagtcactaagataattgtcatataattcacatgatgatgaatttatggtttcaggaaatatgggaatcttt |
30063161 |
T |
|
| Q |
208 |
aagtgttcttcaggcttcacttcaaccttttgccatctcatcttaccctctacatcttttacctgtgcaaatcaattaat |
287 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
30063162 |
aagtgttcttcaggcttcacttcgaccttttgccatctcatctcaccctctttgtcttttacctgtgcaaattaattaat |
30063241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 30032381 - 30032654
Alignment:
| Q |
17 |
caagtgcatgattaagtttaaatattatagtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttct |
116 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30032381 |
caagtgcatgatgaagtttgaatattatggtgcaagcttcattggttgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttct |
30032480 |
T |
|
| Q |
117 |
tccatttagaatacttgtcacatagttactaacatatttgtcatataattcac---atgatgaatttatggtttcaggaaatatgggaatctttaagtgt |
213 |
Q |
| |
|
| || |||||||||||| ||||||| | ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30032481 |
ttcagctagaatacttgttacatagtcattaaaataattgtcatataattcacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgt |
30032580 |
T |
|
| Q |
214 |
tcttcaggcttcacttcaaccttttgccatctcatcttaccctctacatcttttacctgtgcaaatcaattaat |
287 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||| ||||||| |
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| T |
30032581 |
tcttcaggcttcacttcgacctttcgccatctcatcttaccctctttgtcttttacctttgcaaattaattaat |
30032654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 54 - 254
Target Start/End: Complemental strand, 30220261 - 30220061
Alignment:
| Q |
54 |
agcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttcttccatttagaatacttgtcacatagttactaacatat |
153 |
Q |
| |
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||||||| |||||||||| || || | ||||||||||||||| ||||||| ||| ||||||||| | ||||||||||||| ||||||| ||||| ||| |
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| T |
30220261 |
agcattgcttgttggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttcttgaagttagaatacttgttacatagtcactaagataa |
30220162 |
T |
|
| Q |
154 |
ttgtcatataattcacatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcaaccttttgccatctcatcttac |
253 |
Q |
| |
|
|| ||||||||| ||||||| ||| |||||||||||||| | |||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
30220161 |
ttatcatataatattgatgatgagtttgtggtttcaggaaatttaggaatctttatgtgctcttcaagcttcacttcaaccctttgccatctcatcttac |
30220062 |
T |
|
| Q |
254 |
c |
254 |
Q |
| |
|
| |
|
|
| T |
30220061 |
c |
30220061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 30264423 - 30264513
Alignment:
| Q |
11 |
catcatcaagtgcatgattaagtttaaatattatagtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
101 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||| ||| ||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
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|
| T |
30264423 |
catcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
30264513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 30287765 - 30287675
Alignment:
| Q |
11 |
catcatcaagtgcatgattaagtttaaatattatagtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
101 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||| ||| ||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
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|
| T |
30287765 |
catcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
30287675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 30280829 - 30280766
Alignment:
| Q |
54 |
agcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttctt |
117 |
Q |
| |
|
||||||| |||||||||| || || | ||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
30280829 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctt |
30280766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 30304427 - 30304490
Alignment:
| Q |
54 |
agcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttctt |
117 |
Q |
| |
|
||||||| |||||||||| || || | ||| ||||||||||||||||| | ||||||||||||| |
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|
| T |
30304427 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctt |
30304490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 72537 - 72631
Alignment:
| Q |
17 |
caagtgcatgattaagtttaaatattatagtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggt |
111 |
Q |
| |
|
|||||||||||| |||||| |||| || || | ||| ||||| |||||||||| || ||||||||||||||||| |||||| ||| ||||||| |
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|
| T |
72537 |
caagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgaatttcccatagtggtctatcttgtggt |
72631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 79601 - 79695
Alignment:
| Q |
17 |
caagtgcatgattaagtttaaatattatagtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggt |
111 |
Q |
| |
|
|||||||||||| |||||| |||| || || | ||| ||||| |||||||||| || |||||||| || |||||||||||| ||| ||||||| |
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| T |
79601 |
caagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgtatctcccaaagtggtctatcttgtggt |
79695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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