View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_low_12 (Length: 299)
Name: NF8613_low_12
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 28102344 - 28102621
Alignment:
| Q |
1 |
ctctctctctaaactctgctgacagattttcttgtgtccccctctcttattcaagatcaaccaagttttgtggacatgccctttataaaatatataagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102344 |
ctctctctctaaactctgctgacagattttcttgtgtccccctctcttattcaagatcaaccaagttttgtggacatgccctttataaaatatataagtc |
28102443 |
T |
|
| Q |
101 |
tagtcatgtcatgagaaggttacttgtactgcatnnnnnnntaaaagatattcatagtagttacctattttatttc-nnnnnnnnncttcaaattcttat |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28102444 |
tagtcatgtcatgagaaggttacttgtactgcataaaaaaataaaagatattcatagtagttacctattttatttcttttttttttcttcaaattcttat |
28102543 |
T |
|
| Q |
200 |
gagaaaaataaagtttgatcaatcttattgtctcactaaaaattcaatcaaacttttatcctctcaaacaattcattattaat |
282 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102544 |
gaga-----taagtttgatcaatcttattgtctcactaaaaattcaatcaaacttttatcctctcaaacaattcattattaat |
28102621 |
T |
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