View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_low_14 (Length: 278)
Name: NF8613_low_14
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 55 - 264
Target Start/End: Complemental strand, 40843812 - 40843604
Alignment:
| Q |
55 |
gaggcaaaaccacttggattaatgtgcaaaaattagtattgtggaatctgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaat |
154 |
Q |
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| T |
40843812 |
gaggcaacaccacttggatta-tgtgcaaaaattagtattgtggaatccgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaat |
40843714 |
T |
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| Q |
155 |
tctcaaagcctttcctcctggctctgtttttgaagatctccctcttatacctacttttgttaacattcatggttttgattatgacctgtgacagatgact |
254 |
Q |
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| T |
40843713 |
tctcaaagcctttcctcctggctctgtttttgaagatctccctcttatacctacttttgttaacattcatggttttgattatgacctgtgacagatgact |
40843614 |
T |
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| Q |
255 |
acaagctgat |
264 |
Q |
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| T |
40843613 |
acaagctgat |
40843604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 46502271 - 46502515
Alignment:
| Q |
18 |
gttaatggcatactttgtctctgtcaaggcaatggaagaggcaaaaccacttggattaatgtgcaaaaattagtattgtggaatctgtatacagaggaat |
117 |
Q |
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| T |
46502271 |
gttaatggcatactttgtctctgtcaaggcaatggaagaggtgacaccacttggatt---gcacaaaaagttgtattgtggaacccatctacagaggaat |
46502367 |
T |
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| Q |
118 |
tcaaagtcattcctagtggctcttttgaacgtacaattctcaaagcctttcctcctggctctgtttttgaagatctccctcttatacctacttttgttaa |
217 |
Q |
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| T |
46502368 |
tcaaagtcattcctaatggttcttttgaacatgcaattctgaaagcctttcctcctggcactgtttttgaggatcttcctgttattaatactattgttaa |
46502467 |
T |
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| Q |
218 |
cattcatggttttgattatga-cctgtgacagatgactacaagctgat |
264 |
Q |
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| T |
46502468 |
cattcatggttttggttatgacccagtgtccgatgactacaagctgat |
46502515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 4041871 - 4041692
Alignment:
| Q |
81 |
caaaaattagtattgtggaatctgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaattctcaaagcctttcctcctggctctg |
180 |
Q |
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|||||| | ||||||||||||| | ||| || |||||||| | |||||||| |||||| ||||| | |||||||||||||| ||||| ||||| |||| |
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| T |
4041871 |
caaaaagttgtattgtggaatccatctacggatgaattcaaggccattcctaatggctcctttgagcacacaattctcaaagcatttccccctggatctg |
4041772 |
T |
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| Q |
181 |
tttttgaagatctccctcttatacctacttttgttaacattcatggttttgattatga-cctgtgacagatgactacaag |
259 |
Q |
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||||||||||||| ||| |||| |||||| |||||||||| || |||| |||||| ||||| ||||||||||||||| |
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| T |
4041771 |
tttttgaagatctacctacaatacatactttcattaacattcacgggtttggttatgatcctgtcacagatgactacaag |
4041692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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